Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g36510 Schrenkiella parvula HOM05D003378 ORTHO05D003942 9.2e-81 303.5 156 100.0
Peaxi162Scf00009g01921 Petunia axillaris HOM05D003378 ORTHO05D003942 2.4e-12 76.3 66 59.1
C09p74570 Brassica napus HOM05D003378 ORTHO05D003942 3.1e-12 75.9 42 85.7
GSVIVG01033998001 Vitis vinifera HOM05D003378 ORTHO05D003942 3.1e-12 75.9 42 83.3
BcaC06g31965 Brassica carinata HOM05D003378 ORTHO05D003942 7.0e-12 74.7 42 83.3
BcaNung02769 Brassica carinata HOM05D003378 ORTHO05D003942 7.0e-12 74.7 42 83.3
BolC9t60189H Brassica oleracea HOM05D003378 ORTHO05D003942 7.0e-12 74.7 42 83.3
CAN.G355.3 Capsicum annuum HOM05D003378 ORTHO05D003942 7.0e-12 74.7 42 81.0
Thhalv10013276m.g Eutrema salsugineum HOM05D003378 ORTHO05D003942 7.0e-12 74.7 42 83.3
Sp6g40570 Schrenkiella parvula HOM05D003378 ORTHO05D003942 7.0e-12 74.7 42 83.3
THA.LOC104823284 Tarenaya hassleriana HOM05D003378 ORTHO05D003942 7.0e-12 74.7 42 83.3
Atru.chr8.2207 Acer truncatum HOM05D003378 ORTHO05D003942 9.1e-12 74.3 42 81.0
Actinidia29123 Actinidia chinensis HOM05D003378 ORTHO05D003942 9.1e-12 74.3 42 81.0
Cfa017247 Carpinus fangiana HOM05D003378 ORTHO05D003942 9.1e-12 74.3 42 81.0
CiPaw.09G207100 Carya illinoinensis HOM05D003378 ORTHO05D003942 9.1e-12 74.3 42 81.0
Ciclev10011473m.g Citrus clementina HOM05D003378 ORTHO05D003942 9.1e-12 74.3 42 81.0
Cc06_g01590 Coffea canephora HOM05D003378 ORTHO05D003942 9.1e-12 74.3 42 78.6
Haze_20961 Corylus avellana HOM05D003378 ORTHO05D003942 9.1e-12 74.3 42 81.0
MELO3C009186.2 Cucumis melo HOM05D003378 ORTHO05D003942 9.1e-12 74.3 42 81.0
Duzib093G0826 Durio zibethinus HOM05D003378 ORTHO05D003942 9.1e-12 74.3 42 81.0
Gohir.A01G225800 Gossypium hirsutum HOM05D003378 ORTHO05D003942 9.1e-12 74.3 42 81.0
Gohir.D01G215500 Gossypium hirsutum HOM05D003378 ORTHO05D003942 9.1e-12 74.3 42 81.0
Gorai.002G261700 Gossypium raimondii HOM05D003378 ORTHO05D003942 9.1e-12 74.3 42 81.0
Manes.08G089250 Manihot esculenta HOM05D003378 ORTHO05D003942 9.1e-12 74.3 42 81.0
Manes.09G103000 Manihot esculenta HOM05D003378 ORTHO05D003942 9.1e-12 74.3 42 81.0
Potri.006G097600 Populus trichocarpa HOM05D003378 ORTHO05D003942 9.1e-12 74.3 42 81.0
PGR031G3689 Punica granatum HOM05D003378 ORTHO05D003942 9.1e-12 74.3 42 81.0
Sabra06G0075100 Salix brachista HOM05D003378 ORTHO05D003942 9.1e-12 74.3 42 81.0
Thecc.05G020500 Theobroma cacao HOM05D003378 ORTHO05D003942 9.1e-12 74.3 42 81.0
Cpa.g.sc163.3 Carica papaya HOM05D003378 ORTHO05D003942 1.2e-11 73.9 42 81.0
CAN.G1297.6 Capsicum annuum HOM05D003378 ORTHO05D003942 1.6e-11 73.6 40 85.0
ClCG10G021890 Citrullus lanatus HOM05D003378 ORTHO05D003942 1.6e-11 73.6 44 75.0
MBI14_g04426_MAGBIO Magnolia biondii HOM05D003378 ORTHO05D003942 1.6e-11 73.6 40 85.0
TWI77G0412 Tripterygium wilfordii HOM05D003378 ORTHO05D003942 1.6e-11 73.6 40 85.0
CiPaw.10G154700 Carya illinoinensis HOM05D003378 ORTHO05D003942 2.0e-11 73.2 42 78.6
Eucgr.A00516 Eucalyptus grandis HOM05D003378 ORTHO05D003942 2.0e-11 73.2 42 78.6
PSO339G6012 Papaver somniferum HOM05D003378 ORTHO05D003942 2.0e-11 73.2 42 81.0
PSO801G0661 Papaver somniferum HOM05D003378 ORTHO05D003942 2.0e-11 73.2 42 81.0
TWI53G0359 Tripterygium wilfordii HOM05D003378 ORTHO05D003942 2.0e-11 73.2 42 78.6
A10p33660 Brassica napus HOM05D003378 ORTHO05D003942 2.6e-11 72.8 42 81.0
BraA10t45397Z Brassica rapa HOM05D003378 ORTHO05D003942 2.6e-11 72.8 42 81.0
Dinv14534 Davidia involucrata HOM05D003378 ORTHO05D003942 2.6e-11 72.8 42 78.6
Lalb_Chr03g0043071 Lupinus albus HOM05D003378 ORTHO05D003942 2.6e-11 72.8 42 78.6
Prupe.6G271800 Prunus persica HOM05D003378 ORTHO05D003942 2.6e-11 72.8 42 78.6
C09p67290 Brassica napus HOM05D003378 ORTHO05D003942 3.5e-11 72.4 42 81.0
Nitab4.5_0000008g0880 Nicotiana tabacum HOM05D003378 ORTHO05D003942 3.5e-11 72.4 42 78.6
Nitab4.5_0004030g0030 Nicotiana tabacum HOM05D003378 ORTHO05D003942 3.5e-11 72.4 42 78.6
Peaxi162Scf00141g00615 Petunia axillaris HOM05D003378 ORTHO05D003942 3.5e-11 72.4 42 78.6
RcHm_v2.0_Chr3g0463701 Rosa chinensis HOM05D003378 ORTHO05D003942 3.5e-11 72.4 42 78.6
unitig_27.g24826 Utricularia gibba HOM05D003378 ORTHO05D003942 3.5e-11 72.4 42 78.6
vmacro22553 Vaccinium macrocarpon HOM05D003378 ORTHO05D003942 3.5e-11 72.4 42 78.6
Zm00001eb297970 Zea mays HOM05D003378 ORTHO05D003942 3.5e-11 72.4 40 82.5
ATR0618G034 Amborella trichopoda HOM05D003378 ORTHO05D003942 4.5e-11 72.0 40 80.0
Aqoxy2G00958 Aquilegia oxysepala HOM05D003378 ORTHO05D003942 4.5e-11 72.0 42 78.6
arahy.Tifrunner.gnm1.ann1.EK5UG7 Arachis hypogaea HOM05D003378 ORTHO05D003942 4.5e-11 72.0 42 78.6
arahy.Tifrunner.gnm1.ann1.FDLX2Z Arachis hypogaea HOM05D003378 ORTHO05D003942 4.5e-11 72.0 42 78.6
EL10Ac5g11530 Beta vulgaris HOM05D003378 ORTHO05D003942 4.5e-11 72.0 42 78.6
AUR62020689 Chenopodium quinoa HOM05D003378 ORTHO05D003942 4.5e-11 72.0 42 78.6
AUR62025812 Chenopodium quinoa HOM05D003378 ORTHO05D003942 4.5e-11 72.0 42 78.6
Os07g0100300 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 4.5e-11 72.0 40 82.5
SGA_v2.0_scaffold85G26755 Striga asiatica HOM05D003378 ORTHO05D003942 4.5e-11 72.0 42 78.6
Ah.02g114930 Amaranthus hybridus HOM05D003378 ORTHO05D003942 5.9e-11 71.6 42 76.2
BcaC04g19331 Brassica carinata HOM05D003378 ORTHO05D003942 5.9e-11 71.6 40 82.5
Hma1.2p1_0244F.1_g101280 Hydrangea macrophylla HOM05D003378 ORTHO05D003942 5.9e-11 71.6 42 76.2
Nitab4.5_0000652g0220 Nicotiana tabacum HOM05D003378 ORTHO05D003942 5.9e-11 71.6 40 82.5
Nitab4.5_0004912g0010 Nicotiana tabacum HOM05D003378 ORTHO05D003942 5.9e-11 71.6 40 82.5
Sc01g0006660 Simmondsia chinensis HOM05D003378 ORTHO05D003942 5.9e-11 71.6 42 76.2
AL6G10970 Arabidopsis lyrata HOM05D003378 ORTHO05D003942 7.7e-11 71.2 42 81.0
EL10Ac5g11512 Beta vulgaris HOM05D003378 ORTHO05D003942 7.7e-11 71.2 40 82.5
A03p00390 Brassica napus HOM05D003378 ORTHO05D003942 7.7e-11 71.2 42 81.0
C03p00550 Brassica napus HOM05D003378 ORTHO05D003942 7.7e-11 71.2 42 81.0
BolC3t12621H Brassica oleracea HOM05D003378 ORTHO05D003942 7.7e-11 71.2 42 81.0
BraA03t09430Z Brassica rapa HOM05D003378 ORTHO05D003942 7.7e-11 71.2 42 81.0
Carub.0006s0067 Capsella rubella HOM05D003378 ORTHO05D003942 7.7e-11 71.2 42 81.0
AT5G01220 Arabidopsis thaliana HOM05D003378 ORTHO05D003942 1.0e-10 70.9 42 78.6
BcaC07g38722 Brassica carinata HOM05D003378 ORTHO05D003942 1.0e-10 70.9 43 79.1
A01p03650 Brassica napus HOM05D003378 ORTHO05D003942 1.0e-10 70.9 42 78.6
A02p30150 Brassica napus HOM05D003378 ORTHO05D018651 1.0e-10 70.9 42 78.6
CARHR211550 Cardamine hirsuta HOM05D003378 ORTHO05D003942 1.0e-10 70.9 42 78.6
Migut.J00201 Erythranthe guttata HOM05D003378 ORTHO05D003942 1.0e-10 70.9 42 76.2
BcaC03g15346 Brassica carinata HOM05D003378 ORTHO05D003942 1.3e-10 70.5 43 76.7
CDE02G3708 Ceratophyllum demersum HOM05D003378 ORTHO05D003942 1.3e-10 70.5 40 80.0
COL.COLO4_14573 Corchorus olitorius HOM05D003378 ORTHO05D003942 1.3e-10 70.5 42 76.2
FvH4_6g11930 Fragaria vesca HOM05D003378 ORTHO05D003942 1.3e-10 70.5 42 76.2
FAN02G2254 Fragaria x ananassa HOM05D003378 ORTHO05D003942 1.3e-10 70.5 42 76.2
FAN05G4401 Fragaria x ananassa HOM05D003378 ORTHO05D003942 1.3e-10 70.5 42 76.2
FAN09G0987 Fragaria x ananassa HOM05D003378 ORTHO05D003942 1.3e-10 70.5 42 76.2
FAN14G4021 Fragaria x ananassa HOM05D003378 ORTHO05D003942 1.3e-10 70.5 42 76.2
FAN14G4776 Fragaria x ananassa HOM05D003378 ORTHO05D003942 1.3e-10 70.5 42 76.2
Phvul.010G005100 Phaseolus vulgaris HOM05D003378 ORTHO05D003942 1.3e-10 70.5 42 76.2
unitig_0.g1457 Utricularia gibba HOM05D003378 ORTHO05D003942 1.3e-10 70.5 42 76.2
unitig_88.g27657 Utricularia gibba HOM05D003378 ORTHO05D003942 1.3e-10 70.5 42 76.2
VMungo0331G1068 Vigna mungo HOM05D003378 ORTHO05D003942 1.3e-10 70.5 42 76.2
arahy.Tifrunner.gnm1.ann1.L6AUEE Arachis hypogaea HOM05D003378 ORTHO05D003942 1.7e-10 70.1 42 76.2
arahy.Tifrunner.gnm1.ann1.YIK7D0 Arachis hypogaea HOM05D003378 ORTHO05D003942 1.7e-10 70.1 42 76.2
Glyma.01G113000 Glycine max HOM05D003378 ORTHO05D003942 1.7e-10 70.1 42 76.2
Glyma.03G078300 Glycine max HOM05D003378 ORTHO05D003942 1.7e-10 70.1 42 76.2
Nn2g11403 Nelumbo nucifera HOM05D003378 ORTHO05D003942 1.7e-10 70.1 42 76.2
Oeu015017.1 Olea europaea HOM05D003378 ORTHO05D003942 1.7e-10 70.1 42 76.2
Oeu030526.1 Olea europaea HOM05D003378 ORTHO05D003942 1.7e-10 70.1 42 76.2
Potri.016G112600 Populus trichocarpa HOM05D003378 ORTHO05D003942 1.7e-10 70.1 42 78.6
Gohir.D04G129200 Gossypium hirsutum HOM05D003378 ORTHO05D003942 2.2e-10 69.7 42 73.8
Gorai.012G112200 Gossypium raimondii HOM05D003378 ORTHO05D003942 2.2e-10 69.7 42 73.8
Actinidia13774 Actinidia chinensis HOM05D003378 ORTHO05D003942 2.9e-10 69.3 42 78.6
Aa31LG1G22850 Aethionema arabicum HOM05D003378 ORTHO05D003942 2.9e-10 69.3 42 78.6
CANSAT35G1853 Cannabis sativa HOM05D003378 ORTHO05D003942 2.9e-10 69.3 42 78.6
CsaV3_3G034100 Cucumis sativus L. HOM05D003378 ORTHO05D003942 2.9e-10 69.3 42 78.6
HanXRQChr10g0287061 Helianthus annuus HOM05D003378 ORTHO05D003942 2.9e-10 69.3 42 73.8
Sed0002007 Sechium edule HOM05D003378 ORTHO05D003942 2.9e-10 69.3 42 78.6
Hund22726 Selenicereus undatus HOM05D003378 ORTHO05D003942 2.9e-10 69.3 42 73.8
PGSC0003DMG400011091 Solanum tuberosum HOM05D003378 ORTHO05D003942 2.9e-10 69.3 42 78.6
TAR623G1156 Trochodendron aralioides HOM05D003378 ORTHO05D003942 2.9e-10 69.3 42 78.6
DCAR_028819 Daucus carota HOM05D003378 ORTHO05D003942 3.8e-10 68.9 40 77.5
Lsat_1_v5_gn_9_36000 Lactuca sativa HOM05D003378 ORTHO05D003942 3.8e-10 68.9 42 73.8
Solyc10g085100.2 Solanum lycopersicum HOM05D003378 ORTHO05D003942 3.8e-10 68.9 42 78.6
Sopen10g034560 Solanum pennellii HOM05D003378 ORTHO05D003942 3.8e-10 68.9 42 78.6
Glyma.18G197600 Glycine max HOM05D003378 ORTHO05D003942 5.0e-10 68.6 40 82.5
Gohir.A04G088800 Gossypium hirsutum HOM05D003378 ORTHO05D003942 5.0e-10 68.6 42 71.4
Lj1g0014660 Lotus japonicus HOM05D003378 ORTHO05D003942 5.0e-10 68.6 40 82.5
MD12G1161400 Malus domestica HOM05D003378 ORTHO05D003942 5.0e-10 68.6 42 76.2
Phvul.008G106900 Phaseolus vulgaris HOM05D003378 ORTHO05D003942 5.0e-10 68.6 40 82.5
Sabra16G0108300 Salix brachista HOM05D003378 ORTHO05D003942 5.0e-10 68.6 42 76.2
C02p29520 Brassica napus HOM05D003378 ORTHO05D003942 6.5e-10 68.2 70 54.3
CSS0025489 Camellia sinensis var. sinensis HOM05D003378 ORTHO05D003942 6.5e-10 68.2 42 73.8
Glyma.07G146400 Glycine max HOM05D003378 ORTHO05D003942 6.5e-10 68.2 40 80.0
TAR369G0131 Trochodendron aralioides HOM05D003378 ORTHO05D003942 6.5e-10 68.2 42 76.2
MD04G1148000 Malus domestica HOM05D003378 ORTHO05D003942 8.5e-10 67.8 42 76.2
Medtr7g067340 Medicago truncatula HOM05D003378 ORTHO05D003942 8.5e-10 67.8 40 80.0
Psat3g130760 Pisum sativum HOM05D003378 ORTHO05D003942 8.5e-10 67.8 40 80.0
Sed0023271 Sechium edule HOM05D003378 ORTHO05D003942 8.5e-10 67.8 42 76.2
TPR.G1566 Trifolium pratense HOM05D003378 ORTHO05D003942 8.5e-10 67.8 40 80.0
Ca_20313_v3 Cicer arietinum L. HOM05D003378 ORTHO05D003942 1.1e-09 67.4 42 76.2
Medtr4g015260 Medicago truncatula HOM05D003378 ORTHO05D003942 1.1e-09 67.4 42 76.2
Psat7g247920 Pisum sativum HOM05D003378 ORTHO05D003942 1.1e-09 67.4 42 76.2
THA.LOC104827042 Tarenaya hassleriana HOM05D003378 ORTHO05D003942 1.1e-09 67.4 42 76.2
TPR.G15969 Trifolium pratense HOM05D003378 ORTHO05D003942 1.1e-09 67.4 42 76.2
Lj2C81T6 Lonicera japonica HOM05D003378 ORTHO05D003942 1.5e-09 67.0 40 77.5
SalBow4G1026 Salvia bowleyana HOM05D003378 ORTHO05D003942 1.5e-09 67.0 42 73.8
SalBow4G2524 Salvia bowleyana HOM05D003378 ORTHO05D003942 1.5e-09 67.0 42 73.8
Solyc09g014300.3 Solanum lycopersicum HOM05D003378 ORTHO05D003942 1.5e-09 67.0 42 76.2
Sopen09g007150 Solanum pennellii HOM05D003378 ORTHO05D003942 1.5e-09 67.0 42 76.2
PGSC0003DMG400020317 Solanum tuberosum HOM05D003378 ORTHO05D003942 1.5e-09 67.0 42 76.2
Ca_07617_v3 Cicer arietinum L. HOM05D003378 ORTHO05D003942 1.9e-09 66.6 40 80.0
Os01g0142300 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 1.9e-09 66.6 40 80.0
Rhsim05G0206900 Rhododendron simsii HOM05D003378 ORTHO05D003942 1.9e-09 66.6 42 73.8
SGA_v2.0_scaffold106G30519 Striga asiatica HOM05D003378 ORTHO05D003942 1.9e-09 66.6 42 73.8
HPP92_012629 Vanilla planifolia HOM05D003378 ORTHO05D003942 1.9e-09 66.6 39 76.9
Zm00001eb335670 Zea mays HOM05D003378 ORTHO05D003942 1.9e-09 66.6 40 80.0
CSS0046394 Camellia sinensis var. sinensis HOM05D003378 ORTHO05D003942 3.2e-09 65.9 42 73.8
Lalb_Chr13g0291251 Lupinus albus HOM05D003378 ORTHO05D003942 3.2e-09 65.9 42 73.8
MSTRG.19023 Avicennia marina HOM05D003378 ORTHO05D003942 4.2e-09 65.5 42 73.8
SMO118G0052 Selaginella moellendorffii HOM05D003378 ORTHO05D003942 4.2e-09 65.5 40 77.5
Migut.L01997 Erythranthe guttata HOM05D003378 ORTHO05D003942 5.5e-09 65.1 42 73.8
Lj3g0001695 Lotus japonicus HOM05D003378 ORTHO05D003942 7.2e-09 64.7 42 71.4
vmacro08599 Vaccinium macrocarpon HOM05D003378 ORTHO05D003942 7.2e-09 64.7 42 69.0
ECA247G2610 Erigeron canadensis HOM05D003378 ORTHO05D003942 9.4e-09 64.3 42 69.0
Lsat_1_v5_gn_5_155081 Lactuca sativa HOM05D003378 ORTHO05D003942 9.4e-09 64.3 42 69.0
Rhsim04G0166600 Rhododendron simsii HOM05D003378 ORTHO05D003942 9.4e-09 64.3 42 69.0
ECA248G0513 Erigeron canadensis HOM05D003378 ORTHO05D003942 1.2e-08 63.9 42 69.0
HanXRQChr11g0329601 Helianthus annuus HOM05D003378 ORTHO05D003942 1.2e-08 63.9 42 69.0
Lj3C956T2 Lonicera japonica HOM05D003378 ORTHO05D003942 1.6e-08 63.5 42 71.4
Actinidia01107 Actinidia chinensis HOM05D003378 ORTHO05D003942 2.1e-08 63.2 42 69.0
CBR_g3329 Chara braunii HOM05D003378 ORTHO05D003942 2.1e-08 63.2 40 70.0
SalBow5G3819 Salvia bowleyana HOM05D003378 ORTHO05D003942 2.1e-08 63.2 42 69.0
SalBow5G4142 Salvia bowleyana HOM05D003378 ORTHO05D003942 2.1e-08 63.2 42 69.0
Actinidia05349 Actinidia chinensis HOM05D003378 ORTHO05D003942 2.7e-08 62.8 40 72.5
HanXRQChr04g0127691 Helianthus annuus HOM05D003378 ORTHO05D003942 6.1e-08 61.6 43 65.1
Lalb_Chr07g0193451 Lupinus albus HOM05D003378 ORTHO05D003942 6.1e-08 61.6 42 69.0
Duzib106G1409 Durio zibethinus HOM05D003378 ORTHO05D003942 1.0e-07 60.8 35 77.1
DCAR_024027 Daucus carota HOM05D003378 ORTHO05D003942 1.4e-07 60.5 40 70.0
Zm00001eb011720 Zea mays HOM05D003378 ORTHO05D003942 1.4e-07 60.5 40 70.0
Zm00001eb398000 Zea mays HOM05D003378 ORTHO05D003942 1.4e-07 60.5 40 70.0
Os03g0265100 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 1.8e-07 60.1 40 67.5
Pp3c9_8520 Physcomitrium patens HOM05D003378 ORTHO05D003942 1.8e-07 60.1 40 67.5
SGA_v2.0_scaffold110G31270 Striga asiatica HOM05D003378 ORTHO05D003942 2.3e-07 59.7 38 71.1
Pp3c15_4410 Physcomitrium patens HOM05D003378 ORTHO05D003942 4.0e-07 58.9 40 67.5
HPP92_019420 Vanilla planifolia HOM05D003378 ORTHO05D003942 4.0e-07 58.9 42 66.7
SEGI_03332 Sequoiadendron giganteum HOM05D003378 ORTHO05D003942 8.8e-07 57.8 40 72.5
AagrBONN_evm.TU.Sc2ySwM_228.713 Anthoceros agrestis HOM05D003378 ORTHO05D003942 7.5e-06 54.7 40 60.0


User provided reference genes

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