Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 4.2e-212 741.1 379 100.0
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 2.6e-185 652.1 379 86.8
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 5.7e-185 651.0 379 87.3
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 5.7e-185 651.0 379 86.8
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 4.1e-183 644.8 378 87.3
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 2.0e-182 642.5 379 86.0
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 2.8e-179 632.1 378 85.2
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 1.8e-178 629.4 378 85.2
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 1.2e-177 626.7 378 84.9
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 4.4e-177 624.8 378 84.4
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 1.3e-176 623.2 378 84.9
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 1.4e-175 619.8 378 84.1
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 1.6e-171 606.3 378 81.5
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 3.3e-164 582.0 400 77.5
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 5.8e-153 544.7 379 72.6
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 8.3e-152 540.8 325 84.9
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 1.1e-138 497.3 350 77.1
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 7.9e-118 427.9 376 57.2
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 1.1e-116 424.1 387 57.1
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 1.1e-116 424.1 386 56.7
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 5.6e-116 421.8 381 56.2
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 7.4e-116 421.4 382 56.8
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 2.8e-115 419.5 387 56.6
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 6.2e-115 418.3 384 56.0
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 1.4e-114 417.2 387 56.8
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.8e-114 416.8 384 55.7
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 3.1e-114 416.0 386 57.3
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 3.1e-114 416.0 378 56.6
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 2.0e-113 413.3 383 54.6
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 4.5e-113 412.1 383 55.9
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 5.8e-113 411.8 387 56.1
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 1.7e-112 410.2 387 55.6
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 3.8e-112 409.1 380 56.6
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 8.4e-112 407.9 385 55.3
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 1.1e-111 407.5 417 52.8
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 9.3e-111 404.4 377 54.1
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 2.7e-110 402.9 379 54.1
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 7.9e-110 401.4 378 55.6
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 1.3e-109 400.6 385 54.8
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 2.3e-109 399.8 379 54.4
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.3e-109 399.8 385 54.0
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 3.0e-109 399.4 381 52.0
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 3.9e-109 399.1 388 54.6
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 3.9e-109 399.1 385 54.5
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 5.1e-109 398.7 379 51.5
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 6.7e-109 398.3 381 52.5
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 6.7e-109 398.3 388 53.6
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 8.7e-109 397.9 379 54.6
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 8.7e-109 397.9 385 53.2
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 8.7e-109 397.9 381 55.9
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 1.1e-108 397.5 380 53.9
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 1.1e-108 397.5 378 56.3
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 1.5e-108 397.1 393 53.9
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 1.5e-108 397.1 388 53.6
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 2.5e-108 396.4 363 55.1
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 2.5e-108 396.4 390 54.1
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 4.3e-108 395.6 387 53.0
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 5.7e-108 395.2 387 53.0
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 1.6e-107 393.7 388 52.8
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 2.2e-107 393.3 387 54.5
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 4.8e-107 392.1 380 54.2
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 1.4e-106 390.6 389 54.0
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 2.4e-106 389.8 380 53.9
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 8.5e-104 381.3 384 52.9
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 8.5e-104 381.3 387 52.2
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 1.1e-103 380.9 382 52.6
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 1.9e-103 380.2 386 52.3
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 4.2e-103 379.0 386 52.1
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 5.5e-103 378.6 358 55.3
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 2.7e-102 376.3 375 50.9
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 1.4e-101 374.0 380 51.6
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 1.8e-101 373.6 380 52.6
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 5.1e-101 372.1 375 49.9
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 5.1e-101 372.1 398 48.7
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 5.1e-101 372.1 366 52.7
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 3.3e-100 369.4 374 52.7
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 1.7e-99 367.1 397 51.1
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.7e-99 367.1 362 53.3
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 6.3e-99 365.2 256 75.8
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 1.8e-98 363.6 377 48.5
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 1.7e-96 357.1 410 48.8
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 3.8e-96 355.9 384 50.0
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 6.5e-96 355.1 378 48.7
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 2.5e-95 353.2 368 50.8
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 3.2e-95 352.8 391 48.3
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 7.9e-94 348.2 382 51.6
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 6.7e-93 345.1 404 46.3
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 5.3e-90 335.5 378 49.5
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 6.9e-90 335.1 322 55.3
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 2.6e-89 333.2 380 48.9
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 2.9e-88 329.7 373 50.7
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 8.0e-86 321.6 309 53.4
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 3.7e-83 312.8 381 44.1
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 3.7e-83 312.8 377 45.6
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.4e-82 310.8 334 50.9
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 3.1e-82 309.7 336 50.9
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 2.0e-81 307.0 379 46.4
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 7.7e-81 305.1 286 54.5
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 2.9e-80 303.1 191 81.7
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 8.5e-80 301.6 283 55.5
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 1.6e-73 280.8 180 78.9
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 1.6e-73 280.8 180 78.9
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 2.2e-67 260.4 382 40.6
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 6.3e-67 258.8 365 40.8
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 5.9e-65 252.3 312 44.2
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 1.0e-64 251.5 350 41.7
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 1.0e-64 251.5 359 41.8
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 1.3e-64 251.1 312 45.2
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 6.1e-62 242.3 381 38.3
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 5.4e-58 229.2 398 36.4
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 1.2e-49 201.4 329 38.6
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 7.3e-47 192.2 205 49.8
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 8.9e-45 185.3 126 75.4
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 2.6e-36 157.1 188 46.3
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 8.3e-35 152.1 177 50.8
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 5.4e-34 149.4 148 51.4
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 5.6e-31 139.4 331 31.1
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 4.7e-30 136.3 370 31.1
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 1.7e-27 127.9 197 42.6
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 3.8e-27 126.7 166 44.6
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 5.6e-23 112.8 118 48.3
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 5.6e-23 112.8 111 50.5
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.4e-21 107.5 159 42.1
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 8.4e-19 99.0 358 25.7
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.6e-14 84.7 73 54.8
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 1.1e-13 82.0 71 52.1
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 9.0e-13 79.0 137 41.6
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.5e-12 78.2 61 59.0
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.3e-11 75.1 61 55.7
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 3.2e-10 70.5 59 54.2
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 7.9e-09 65.9 66 48.5
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 7.9e-09 65.9 66 48.5


User provided reference genes

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