Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g35990 Schrenkiella parvula HOM05D000464 ORTHO05D372217 3.2e-81 305.1 157 100.0
Sp1g27860 Schrenkiella parvula HOM05D000464 ORTHO05D000408 7.2e-17 91.3 59 86.4
Thhalv10007722m.g Eutrema salsugineum HOM05D000464 ORTHO05D000408 2.1e-16 89.7 60 83.3
BcaC05g27249 Brassica carinata HOM05D000464 ORTHO05D000408 2.8e-16 89.4 59 83.1
A09p34020 Brassica napus HOM05D000464 ORTHO05D000408 2.8e-16 89.4 59 83.1
C05p31590 Brassica napus HOM05D000464 ORTHO05D000408 2.8e-16 89.4 59 83.1
BolC5t31882H Brassica oleracea HOM05D000464 ORTHO05D000408 2.8e-16 89.4 59 83.1
BraA09t38947Z Brassica rapa HOM05D000464 ORTHO05D000408 2.8e-16 89.4 59 83.1
BcaB07g32891 Brassica carinata HOM05D000464 ORTHO05D000408 6.1e-16 88.2 59 81.4
AL1G46300 Arabidopsis lyrata HOM05D000464 ORTHO05D000408 1.0e-15 87.4 59 76.3
AT1G32190 Arabidopsis thaliana HOM05D000464 ORTHO05D000408 1.0e-15 87.4 59 76.3
Carub.0001s3052 Capsella rubella HOM05D000464 ORTHO05D000408 1.0e-15 87.4 59 76.3
BraA05t21394Z Brassica rapa HOM05D000464 ORTHO05D000408 5.2e-15 85.1 73 68.5
BcaB03g13755 Brassica carinata HOM05D000464 ORTHO05D000408 8.9e-15 84.3 70 70.0
A05p25160 Brassica napus HOM05D000464 ORTHO05D000408 7.5e-14 81.3 56 80.4
BcaC05g27906 Brassica carinata HOM05D000464 ORTHO05D000408 1.3e-13 80.5 57 78.9
C05p39150 Brassica napus HOM05D000464 ORTHO05D000408 1.3e-13 80.5 57 78.9
BolC5t32649H Brassica oleracea HOM05D000464 ORTHO05D000408 1.3e-13 80.5 57 78.9
Aa31LG2G13820 Aethionema arabicum HOM05D000464 ORTHO05D000408 2.8e-13 79.3 59 71.2
TWI60G1532 Tripterygium wilfordii HOM05D000464 ORTHO05D000408 6.1e-08 61.6 73 49.3
Ciclev10001336m.g Citrus clementina HOM05D000464 ORTHO05D000408 8.0e-08 61.2 71 52.1
Atru.chr6.1528 Acer truncatum HOM05D000464 ORTHO05D000408 3.0e-07 59.3 84 45.2
Cfa012504 Carpinus fangiana HOM05D000464 ORTHO05D000408 3.0e-07 59.3 73 50.7
CiPaw.12G068500 Carya illinoinensis HOM05D000464 ORTHO05D000408 3.0e-07 59.3 73 50.7
Haze_08165 Corylus avellana HOM05D000464 ORTHO05D000408 3.0e-07 59.3 73 50.7
QL12p001695 Quercus lobata HOM05D000464 ORTHO05D000408 3.0e-07 59.3 73 50.7
Rhsim07G0132200 Rhododendron simsii HOM05D000464 ORTHO05D000408 3.0e-07 59.3 74 47.3
Rhsim07G0132300 Rhododendron simsii HOM05D000464 ORTHO05D000408 3.0e-07 59.3 74 47.3
Eucgr.E00227 Eucalyptus grandis HOM05D000464 ORTHO05D000408 5.2e-07 58.5 85 45.9
PGR042G3908 Punica granatum HOM05D000464 ORTHO05D000408 5.2e-07 58.5 84 44.0
GSVIVG01013058001 Vitis vinifera HOM05D000464 ORTHO05D000408 6.8e-07 58.2 70 50.0
Potri.001G136400 Populus trichocarpa HOM05D000464 ORTHO05D000408 1.2e-06 57.4 74 44.6
DCAR_008219 Daucus carota HOM05D000464 ORTHO05D000408 1.5e-06 57.0 70 47.1
FvH4_5g23110 Fragaria vesca HOM05D000464 ORTHO05D000408 1.5e-06 57.0 71 47.9
FAN18G0235 Fragaria x ananassa HOM05D000464 ORTHO05D000408 1.5e-06 57.0 71 47.9
FAN18G1780 Fragaria x ananassa HOM05D000464 ORTHO05D000408 1.5e-06 57.0 71 47.9
Glyma.09G208000 Glycine max HOM05D000464 ORTHO05D000408 1.5e-06 57.0 73 49.3
FAN04G3015 Fragaria x ananassa HOM05D000464 ORTHO05D000408 3.4e-06 55.8 71 49.3
FAN08G0183 Fragaria x ananassa HOM05D000464 ORTHO05D000408 3.4e-06 55.8 71 49.3
FAN13G0749 Fragaria x ananassa HOM05D000464 ORTHO05D000408 3.4e-06 55.8 71 49.3
Hma1.2p1_3246F.1_g334360 Hydrangea macrophylla HOM05D000464 ORTHO05D000408 3.4e-06 55.8 73 45.2
Lalb_Chr09g0325471 Lupinus albus HOM05D000464 ORTHO05D000408 3.4e-06 55.8 56 53.6
Sabra01G0105600 Salix brachista HOM05D000464 ORTHO05D000408 3.4e-06 55.8 74 43.2
VMungo1215G1554 Vigna mungo HOM05D000464 ORTHO05D000408 3.4e-06 55.8 70 48.6
Duzib084G0699 Durio zibethinus HOM05D000464 ORTHO05D000408 4.4e-06 55.5 73 46.6
Manes.15G188100 Manihot esculenta HOM05D000464 ORTHO05D000408 4.4e-06 55.5 73 47.9
Prupe.5G027400 Prunus persica HOM05D000464 ORTHO05D000408 4.4e-06 55.5 70 48.6
SGA_v2.0_scaffold36G14293 Striga asiatica HOM05D000464 ORTHO05D000408 4.4e-06 55.5 71 47.9
Lj2g0002356 Lotus japonicus HOM05D000464 ORTHO05D000408 5.8e-06 55.1 73 47.9
MD06G1038600 Malus domestica HOM05D000464 ORTHO05D000408 5.8e-06 55.1 59 55.9
Potri.003G096900 Populus trichocarpa HOM05D000464 ORTHO05D000408 7.5e-06 54.7 84 41.7
Lj2A230T65 Lonicera japonica HOM05D000464 ORTHO05D000408 9.8e-06 54.3 125 36.0
Medtr5g029210 Medicago truncatula HOM05D000464 ORTHO05D000408 9.8e-06 54.3 80 42.5
Medtr8g037335 Medicago truncatula HOM05D000464 ORTHO05D000408 9.8e-06 54.3 80 42.5
Oeu017083.2 Olea europaea HOM05D000464 ORTHO05D000408 9.8e-06 54.3 71 46.5
Sopen08g024940 Solanum pennellii HOM05D000464 ORTHO05D000408 9.8e-06 54.3 70 47.1


User provided reference genes

Program Settings