Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 0.0e+00 2071.6 1056 100.0
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 1742.6 1065 85.3
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1740.3 1065 85.2
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 0.0e+00 1736.5 1065 85.3
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 1732.2 1065 84.8
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1725.3 1067 85.0
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 0.0e+00 1709.9 1100 82.1
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 0.0e+00 1647.1 1077 81.1
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 0.0e+00 1637.9 1077 81.1
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 0.0e+00 1629.8 1072 80.0
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 0.0e+00 1616.3 1075 79.1
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 0.0e+00 1523.5 1019 80.1
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 0.0e+00 1345.9 1125 67.2
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 0.0e+00 1256.9 1101 63.7
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 0.0e+00 1242.3 1080 64.6
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 0.0e+00 1241.9 1082 64.7
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 0.0e+00 1228.0 1087 63.8
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 0.0e+00 1217.2 1079 63.0
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 0.0e+00 1215.7 1075 64.0
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1196.4 1082 63.0
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 0.0e+00 1196.4 1082 63.0
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 0.0e+00 1193.7 1080 63.1
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 1189.1 1082 62.9
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1186.4 1082 62.8
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 1184.1 1084 62.6
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 0.0e+00 1160.2 1079 62.1
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 3.8e-279 965.3 1126 50.2
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 1.3e-274 950.3 1112 49.0
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 2.8e-274 949.1 831 64.7
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 5.3e-273 944.9 1120 50.2
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 1.2e-269 933.7 1131 48.8
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 2.6e-267 926.0 1138 48.1
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 8.5e-263 911.0 1113 48.8
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 9.5e-262 907.5 1118 48.3
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 4.7e-261 905.2 1102 47.7
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 8.0e-261 904.4 1124 47.6
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 1.0e-260 904.0 1103 48.8
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 1.8e-260 903.3 1130 47.0
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 7.5e-259 897.9 1095 47.6
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.3e-258 897.1 1122 47.5
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 1.3e-258 897.1 1115 47.6
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 4.9e-258 895.2 1110 48.0
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 1.1e-257 894.0 1111 48.0
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.4e-257 892.9 1121 47.3
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 7.0e-257 891.3 1118 47.4
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.2e-256 890.6 1118 47.4
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 4.5e-256 888.6 1106 48.4
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 3.8e-255 885.6 1077 48.4
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 8.6e-255 884.4 1097 47.6
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 2.1e-253 879.8 1111 47.7
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 1.0e-252 877.5 1113 47.5
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 1.4e-252 877.1 1118 46.4
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 1.8e-252 876.7 1088 47.6
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 5.2e-252 875.2 1106 46.7
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 8.9e-252 874.4 1119 46.4
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 7.8e-248 861.3 1103 47.1
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 1.3e-247 860.5 1120 46.0
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 2.3e-247 859.8 1106 46.4
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 8.6e-247 857.8 988 51.2
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 4.3e-246 855.5 1107 46.3
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 1.2e-245 854.0 1088 47.3
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 6.2e-245 851.7 1122 46.5
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 8.0e-245 851.3 1105 46.2
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 1.8e-244 850.1 1115 46.0
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 6.8e-244 848.2 1086 47.4
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 4.4e-243 845.5 1004 49.6
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 3.7e-242 842.4 1109 45.4
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 3.7e-242 842.4 1109 45.2
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 4.9e-242 842.0 1104 46.3
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 8.3e-242 841.3 1124 45.2
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 1.9e-241 840.1 1114 45.9
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 9.2e-241 837.8 1142 44.7
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 2.3e-239 833.2 1088 46.1
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 1.6e-237 827.0 1130 44.2
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 4.9e-234 815.5 1048 46.9
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 8.3e-234 814.7 1124 44.2
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 8.3e-234 814.7 1131 45.4
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 1.1e-233 814.3 1094 44.3
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.4e-233 813.9 960 50.5
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 3.2e-233 812.8 1167 42.3
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 2.8e-229 799.7 1075 45.5
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 2.8e-229 799.7 1081 45.2
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 2.8e-229 799.7 1125 44.0
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.4e-228 797.3 1095 44.1
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.8e-228 797.0 939 49.3
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 3.1e-228 796.2 1119 43.0
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 2.0e-227 793.5 963 48.0
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 4.4e-227 792.3 1136 43.0
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 2.9e-226 789.6 1124 44.0
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 4.1e-225 785.8 1176 42.6
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 3.5e-224 782.7 1103 43.2
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 3.9e-223 779.2 1124 42.0
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 8.6e-223 778.1 1070 45.0
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 1.2e-221 774.2 1084 43.0
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 1.6e-221 773.9 1110 44.6
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 1.1e-220 771.2 1125 43.6
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 1.4e-220 770.8 1132 43.2
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 2.4e-217 760.0 1132 42.0
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 9.6e-214 748.0 1078 43.7
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 6.2e-213 745.3 1093 43.6
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 1.8e-212 743.8 1074 44.3
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 5.8e-211 738.8 1112 42.4
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 1.3e-202 711.1 1123 40.6
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.1e-201 708.0 872 47.9
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 3.0e-199 699.9 1092 41.8
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 4.8e-197 692.6 654 56.9
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 9.0e-196 688.3 654 57.0
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.1e-193 681.4 659 58.1
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 1.3e-191 674.5 1121 39.3
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 1.9e-185 654.1 1148 39.4
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 7.2e-185 652.1 503 65.8
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.0e-183 646.7 643 55.8
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 2.2e-181 640.6 651 55.0
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 5.5e-177 625.9 799 47.2
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 3.9e-175 619.8 659 53.7
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 8.8e-175 618.6 631 55.3
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 2.0e-174 617.5 448 68.1
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 2.6e-174 617.1 538 60.6
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 3.8e-170 603.2 643 54.6
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.6e-160 571.2 901 40.5
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 2.7e-160 570.5 1088 37.5
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 5.7e-158 562.8 859 41.6
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 5.9e-155 552.7 877 40.8
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 2.0e-150 537.7 668 48.1
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 9.5e-145 518.8 938 38.8
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 3.0e-143 513.8 938 37.7
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 1.6e-123 448.4 739 38.8
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.9e-116 424.9 268 78.4
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.9e-116 424.9 268 78.4
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 7.3e-113 412.9 692 39.5
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 2.3e-98 364.8 328 55.8
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.5e-89 334.7 422 46.7
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.5e-83 314.3 206 75.7
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 1.4e-71 275.8 710 31.0
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 8.2e-64 250.0 603 34.2
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.8e-63 248.8 603 34.0
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 2.0e-57 228.8 221 52.5
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 1.8e-50 205.7 142 73.9
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 3.1e-47 194.9 597 30.2
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 6.3e-40 170.6 182 54.9
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 5.3e-39 167.5 807 25.0
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 1.2e-38 166.4 140 60.0
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 2.0e-38 165.6 92 87.0
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 6.1e-35 154.1 644 25.8
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 2.9e-29 135.2 159 52.8
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 1.1e-28 133.3 87 72.4
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 1.8e-23 115.9 115 56.5
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 1.7e-21 109.4 382 28.8
C09p22450 Brassica napus HOM05D004562 ORTHO05D005435 1.2e-17 96.7 115 52.2
BolC3t19259H Brassica oleracea HOM05D004562 ORTHO05D005435 2.6e-17 95.5 111 52.3
BolC9t55163H Brassica oleracea HOM05D004562 ORTHO05D005435 5.8e-17 94.4 111 52.3
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 5.8e-17 94.4 67 68.7
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.1e-15 90.1 158 34.2
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 2.8e-11 75.5 397 23.7
Mapoly0105s0058 Marchantia polymorpha HOM05D027721 ORTHO05D031191 1.4e-07 63.2 231 26.4
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 2.4e-07 62.4 145 34.5


User provided reference genes

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