Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g35330 Schrenkiella parvula HOM05D006487 ORTHO05D007982 4.2e-190 667.9 348 100.0
AL1G54980 Arabidopsis lyrata HOM05D006487 ORTHO05D007982 1.3e-156 556.6 348 84.5
BcaB04g17434 Brassica carinata HOM05D006487 ORTHO05D007982 1.9e-155 552.7 351 84.9
A08p04750 Brassica napus HOM05D006487 ORTHO05D007982 9.7e-155 550.4 359 84.1
BraA08t32504Z Brassica rapa HOM05D006487 ORTHO05D007982 9.7e-155 550.4 359 84.1
Thhalv10011620m.g Eutrema salsugineum HOM05D006487 ORTHO05D007982 1.5e-152 543.1 350 84.6
CARHR037990 Cardamine hirsuta HOM05D006487 ORTHO05D007982 3.8e-151 538.5 351 82.3
Carub.0001s3750 Capsella rubella HOM05D006487 ORTHO05D007982 1.1e-150 537.0 350 82.3
C08p05120 Brassica napus HOM05D006487 ORTHO05D007982 1.0e-148 530.4 358 82.4
BcaC07g37138 Brassica carinata HOM05D006487 ORTHO05D007982 1.8e-148 529.6 356 82.0
AT1G48380 Arabidopsis thaliana HOM05D006487 ORTHO05D007982 3.0e-148 528.9 356 80.6
BolC8t47322H Brassica oleracea HOM05D006487 ORTHO05D007982 1.5e-147 526.6 355 82.3
THA.LOC104820327 Tarenaya hassleriana HOM05D006487 ORTHO05D007982 9.8e-107 391.0 326 66.9
Thecc.05G197400 Theobroma cacao HOM05D006487 ORTHO05D007982 2.1e-85 320.1 375 50.9
Gohir.A08G225300 Gossypium hirsutum HOM05D006487 ORTHO05D007982 2.3e-84 316.6 376 49.5
Gorai.004G262200 Gossypium raimondii HOM05D006487 ORTHO05D007982 2.3e-84 316.6 376 49.7
Gohir.D08G245700 Gossypium hirsutum HOM05D006487 ORTHO05D007982 7.6e-83 311.6 376 48.9
Haze_18332 Corylus avellana HOM05D006487 ORTHO05D007982 3.2e-81 306.2 397 46.3
Aa31LG10G5380 Aethionema arabicum HOM05D006487 ORTHO05D007982 1.2e-80 304.3 239 70.7
Glyma.09G164600 Glycine max HOM05D006487 ORTHO05D007982 2.7e-80 303.1 370 48.4
COL.COLO4_24904 Corchorus olitorius HOM05D006487 ORTHO05D007982 3.0e-79 299.7 347 49.9
Sed0005317 Sechium edule HOM05D006487 ORTHO05D007982 5.1e-79 298.9 372 50.3
FvH4_5g18410 Fragaria vesca HOM05D006487 ORTHO05D007982 1.1e-78 297.7 367 47.4
Lalb_Chr22g0353991 Lupinus albus HOM05D006487 ORTHO05D007982 1.5e-78 297.4 362 47.2
Ca_11836_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 1.9e-78 297.0 359 49.9
Hma1.2p1_0989F.1_g244820 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 1.9e-78 297.0 362 48.9
Lj2g0009690 Lotus japonicus HOM05D006487 ORTHO05D007982 2.5e-78 296.6 380 48.2
GSVIVG01027119001 Vitis vinifera HOM05D006487 ORTHO05D007982 2.5e-78 296.6 349 48.7
Sopen03g029330 Solanum pennellii HOM05D006487 ORTHO05D007982 3.3e-78 296.2 331 50.5
Dinv03426 Davidia involucrata HOM05D006487 ORTHO05D007982 7.3e-78 295.0 353 48.7
Nitab4.5_0003040g0090 Nicotiana tabacum HOM05D006487 ORTHO05D007982 9.6e-78 294.7 319 52.0
Solyc03g098620.3 Solanum lycopersicum HOM05D006487 ORTHO05D007982 9.6e-78 294.7 331 50.8
Nn4g25081 Nelumbo nucifera HOM05D006487 ORTHO05D007982 1.2e-77 294.3 359 49.3
TAR629G0717 Trochodendron aralioides HOM05D006487 ORTHO05D007982 3.6e-77 292.7 356 47.2
TWI81G0553 Tripterygium wilfordii HOM05D006487 ORTHO05D007982 6.2e-77 292.0 371 47.2
Actinidia34682 Actinidia chinensis HOM05D006487 ORTHO05D007982 1.1e-76 291.2 365 46.8
CAN.G929.21 Capsicum annuum HOM05D006487 ORTHO05D007982 1.4e-76 290.8 334 49.4
Cpa.g.sc168.16 Carica papaya HOM05D006487 ORTHO05D007982 1.4e-76 290.8 252 58.3
Glyma.16G213000 Glycine max HOM05D006487 ORTHO05D007982 1.8e-76 290.4 362 46.7
Potri.004G069400 Populus trichocarpa HOM05D006487 ORTHO05D007982 2.4e-76 290.0 357 47.6
Nitab4.5_0000782g0060 Nicotiana tabacum HOM05D006487 ORTHO05D007982 3.1e-76 289.7 344 48.3
Psat1g121120 Pisum sativum HOM05D006487 ORTHO05D007982 3.1e-76 289.7 358 50.0
PGR083G2465 Punica granatum HOM05D006487 ORTHO05D007982 3.1e-76 289.7 350 48.3
Medtr6g077860 Medicago truncatula HOM05D006487 ORTHO05D007982 4.0e-76 289.3 363 49.3
MBI06_g27513_MAGBIO Magnolia biondii HOM05D006487 ORTHO05D007982 5.2e-76 288.9 353 48.2
PGSC0003DMG400010175 Solanum tuberosum HOM05D006487 ORTHO05D007982 5.2e-76 288.9 331 49.8
Lsat_1_v5_gn_0_10541 Lactuca sativa HOM05D006487 ORTHO05D007982 6.8e-76 288.5 331 47.4
Ciclev10020398m.g Citrus clementina HOM05D006487 ORTHO05D007982 8.9e-76 288.1 362 46.1
FAN13G0937 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.2e-75 287.7 333 49.2
PSO063G4419 Papaver somniferum HOM05D006487 ORTHO05D007982 3.4e-75 286.2 366 46.4
Phvul.004G139000 Phaseolus vulgaris HOM05D006487 ORTHO05D007982 3.4e-75 286.2 374 46.0
CsaV3_1G007510 Cucumis sativus L. HOM05D006487 ORTHO05D007982 1.3e-74 284.3 367 46.3
FAN08G3399 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.7e-74 283.9 354 46.9
FAN18G0592 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.7e-74 283.9 336 47.6
SGA_v2.0_scaffold90G27746 Striga asiatica HOM05D006487 ORTHO05D007982 1.7e-74 283.9 337 50.7
Aqoxy3G04297 Aquilegia oxysepala HOM05D006487 ORTHO05D007982 2.2e-74 283.5 351 48.7
PSO782G2052 Papaver somniferum HOM05D006487 ORTHO05D007982 2.9e-74 283.1 366 47.0
arahy.Tifrunner.gnm1.ann1.FG107U Arachis hypogaea HOM05D006487 ORTHO05D007982 1.9e-73 280.4 341 49.6
RcHm_v2.0_Chr7g0177071 Rosa chinensis HOM05D006487 ORTHO05D007982 4.2e-73 279.3 378 43.7
VMungo0464G1082 Vigna mungo HOM05D006487 ORTHO05D007982 1.2e-72 277.7 364 45.6
Manes.02G218400 Manihot esculenta HOM05D006487 ORTHO05D007982 2.1e-72 276.9 361 49.6
Prupe.5G243800 Prunus persica HOM05D006487 ORTHO05D007982 3.5e-72 276.2 366 45.6
arahy.Tifrunner.gnm1.ann1.49K0I5 Arachis hypogaea HOM05D006487 ORTHO05D007982 6.0e-72 275.4 341 49.0
HanXRQChr15g0492111 Helianthus annuus HOM05D006487 ORTHO05D007982 1.7e-71 273.9 348 46.3
Peaxi162Scf00171g00242 Petunia axillaris HOM05D006487 ORTHO05D007982 3.0e-71 273.1 299 50.2
MD14G1245900 Malus domestica HOM05D006487 ORTHO05D007982 3.9e-71 272.7 376 43.6
Migut.O00267 Erythranthe guttata HOM05D006487 ORTHO05D007982 6.6e-71 271.9 337 47.5
Atru.chr9.84 Acer truncatum HOM05D006487 ORTHO05D007982 8.7e-71 271.6 253 54.9
MELO3C002168.2 Cucumis melo HOM05D006487 ORTHO05D007982 1.1e-70 271.2 377 45.6
CANSAT64G1132 Cannabis sativa HOM05D006487 ORTHO05D007982 7.3e-70 268.5 348 45.1
ClCG01G014820 Citrullus lanatus HOM05D006487 ORTHO05D007982 1.3e-69 267.7 251 56.2
MSTRG.23212 Avicennia marina HOM05D006487 ORTHO05D007982 1.6e-69 267.3 352 48.3
DCAR_011682 Daucus carota HOM05D006487 ORTHO05D007982 3.6e-69 266.2 338 47.3
QL10p034099 Quercus lobata HOM05D006487 ORTHO05D007982 3.6e-69 266.2 366 45.1
Oeu023551.1 Olea europaea HOM05D006487 ORTHO05D007982 8.1e-69 265.0 333 46.5
Rhsim08G0124800 Rhododendron simsii HOM05D006487 ORTHO05D007982 8.1e-69 265.0 244 55.3
Eucgr.H00648 Eucalyptus grandis HOM05D006487 ORTHO05D007982 1.4e-68 264.2 219 59.4
AUR62040775 Chenopodium quinoa HOM05D006487 ORTHO05D007982 1.8e-68 263.8 255 54.9
Sabra04G0046600 Salix brachista HOM05D006487 ORTHO05D007982 5.3e-68 262.3 400 42.8
AUR62033020 Chenopodium quinoa HOM05D006487 ORTHO05D007982 9.0e-68 261.5 346 45.1
Sc07g0007560 Simmondsia chinensis HOM05D006487 ORTHO05D007982 1.7e-66 257.3 331 45.0
SalBow5G2999 Salvia bowleyana HOM05D006487 ORTHO05D007982 3.2e-65 253.1 367 42.0
CDE04G1004 Ceratophyllum demersum HOM05D006487 ORTHO05D007982 1.5e-62 244.2 361 40.4
TPR.G19888 Trifolium pratense HOM05D006487 ORTHO05D007982 4.3e-62 242.7 281 51.6
Cc04_g08450 Coffea canephora HOM05D006487 ORTHO05D007982 1.3e-61 241.1 346 43.6
vmacro17744 Vaccinium macrocarpon HOM05D006487 ORTHO05D007982 1.6e-61 240.7 310 43.5
HPP92_014774 Vanilla planifolia HOM05D006487 ORTHO05D007982 6.2e-61 238.8 336 41.4
ATR0618G270 Amborella trichopoda HOM05D006487 ORTHO05D007982 1.2e-59 234.6 381 41.7
Prupe.4G244900 Prunus persica HOM05D006487 ORTHO05D007982 6.4e-58 228.8 253 50.2
EL10Ac8g19478 Beta vulgaris HOM05D006487 ORTHO05D007982 1.1e-57 228.0 339 41.9
Os07g0172200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 2.3e-55 220.3 345 42.9
Zm00001eb271770 Zea mays HOM05D006487 ORTHO05D007982 5.1e-55 219.2 335 41.5
Mapoly0080s0074 Marchantia polymorpha HOM05D006487 ORTHO05D007982 2.8e-53 213.4 353 36.8
Lj9A412T44 Lonicera japonica HOM05D006487 ORTHO05D007982 1.8e-52 210.7 336 40.2
FAN04G2664 Fragaria x ananassa HOM05D006487 ORTHO05D007982 2.4e-52 210.3 354 40.7
Hund22367 Selenicereus undatus HOM05D006487 ORTHO05D007982 5.3e-52 209.1 269 45.4
SMO117G0078 Selaginella moellendorffii HOM05D006487 ORTHO05D007982 1.5e-51 207.6 199 50.3
SEGI_16734 Sequoiadendron giganteum HOM05D006487 ORTHO05D007982 2.0e-51 207.2 338 37.6
TAR629G1006 Trochodendron aralioides HOM05D006487 ORTHO05D007982 2.2e-50 203.8 140 67.9
Pp3c5_25480 Physcomitrium patens HOM05D006487 ORTHO05D007982 4.9e-50 202.6 282 39.0
AagrBONN_evm.TU.Sc2ySwM_228.567 Anthoceros agrestis HOM05D006487 ORTHO05D007982 1.8e-47 194.1 247 41.7
FAN09G4505 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.1e-46 191.4 121 73.6
Cfa017861 Carpinus fangiana HOM05D006487 ORTHO05D007982 1.5e-46 191.0 267 44.6
Pp3c25_9140 Physcomitrium patens HOM05D006487 ORTHO05D007982 1.8e-44 184.1 301 37.5
FAN09G0815 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.5e-43 181.0 122 71.3
CiPaw.16G073400 Carya illinoinensis HOM05D006487 ORTHO05D007982 3.2e-41 173.3 268 42.2
Hma1.2p1_0989F.1_g244830 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 1.3e-39 167.9 164 54.3
BcaC05g27591 Brassica carinata HOM05D006487 ORTHO05D007982 1.5e-35 154.5 119 73.1
Cre13.g576500 Chlamydomonas reinhardtii HOM05D006487 ORTHO05D007982 3.1e-28 130.2 179 41.3
Os06g0730200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 5.9e-27 125.9 128 56.2
Prupe.2G315400 Prunus persica HOM05D006487 ORTHO05D007982 3.2e-25 120.2 225 36.9
BcaC05g27879 Brassica carinata HOM05D024450 ORTHO05D007982 1.0e-23 115.2 86 74.4
Ca_30285_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 2.6e-22 110.5 195 42.1
MCO12G143 Micromonas commoda HOM05D006487 ORTHO05D007982 2.2e-18 97.4 174 37.9
CBR_g34174 Chara braunii HOM05D006487 ORTHO05D007982 7.2e-17 92.4 296 28.4
TPR.G27400 Trifolium pratense HOM05D006487 ORTHO05D007982 9.4e-17 92.0 98 53.1
Ah.14g085790 Amaranthus hybridus HOM05D006487 ORTHO05D007982 3.6e-16 90.1 82 54.9
PRCOL_00006754 Prasinoderma coloniale HOM05D006487 ORTHO05D007982 1.4e-15 88.2 221 29.0
CSS0035874 Camellia sinensis var. sinensis HOM05D006487 ORTHO05D007982 3.8e-10 70.1 130 38.5
A10p09420 Brassica napus HOM05D024450 ORTHO05D033433 6.5e-10 69.3 65 60.0
BraA10t43019Z Brassica rapa HOM05D024450 ORTHO05D033731 6.5e-10 69.3 65 60.0
C05p35710 Brassica napus HOM05D024450 ORTHO05D033433 1.5e-09 68.2 65 60.0
BolC5t32286H Brassica oleracea HOM05D024450 ORTHO05D033433 1.6e-08 64.7 53 67.9
C05p38850 Brassica napus HOM05D000140 ORTHO05D000087 5.2e-07 59.7 48 66.7
SMO117G0021 Selaginella moellendorffii HOM05D006487 ORTHO05D007982 9.8e-06 55.5 144 31.2


User provided reference genes

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