Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g35110 Schrenkiella parvula HOM05D006090 ORTHO05D007600 1.5e-43 179.1 90 100.0
Thhalv10011899m.g Eutrema salsugineum HOM05D006090 ORTHO05D007600 4.4e-43 177.6 90 98.9
BcaB04g17463 Brassica carinata HOM05D006090 ORTHO05D007600 9.8e-43 176.4 90 97.8
BcaC07g37170 Brassica carinata HOM05D006090 ORTHO05D007600 2.2e-42 175.3 90 96.7
C08p05430 Brassica napus HOM05D006090 ORTHO05D007600 2.2e-42 175.3 90 96.7
BolC8t47360H Brassica oleracea HOM05D006090 ORTHO05D007600 2.2e-42 175.3 90 96.7
CARHR037780 Cardamine hirsuta HOM05D006090 ORTHO05D007600 3.7e-42 174.5 90 95.6
BraA08t32537Z Brassica rapa HOM05D006090 ORTHO05D007600 4.9e-42 174.1 90 96.7
AL1G54720 Arabidopsis lyrata HOM05D006090 ORTHO05D007600 1.4e-41 172.6 90 94.4
AT1G48140 Arabidopsis thaliana HOM05D006090 ORTHO05D007600 1.9e-41 172.2 90 93.3
A08p05190 Brassica napus HOM05D006090 ORTHO05D007600 3.2e-41 171.4 90 95.6
Carub.0001s3724 Capsella rubella HOM05D006090 ORTHO05D007600 4.1e-41 171.0 90 91.1
THA.LOC104802658 Tarenaya hassleriana HOM05D006090 ORTHO05D007600 3.9e-39 164.5 90 88.9
BcaC08g43006 Brassica carinata HOM05D006090 ORTHO05D007600 2.5e-38 161.8 91 89.0
C06p02550 Brassica napus HOM05D006090 ORTHO05D007600 2.5e-38 161.8 91 89.0
BolC6t35383H Brassica oleracea HOM05D006090 ORTHO05D007600 5.6e-38 160.6 91 89.0
Aa31LG10G5590 Aethionema arabicum HOM05D006090 ORTHO05D007600 7.3e-38 160.2 97 84.5
MD05G1171700 Malus domestica HOM05D006090 ORTHO05D007600 9.5e-38 159.8 87 87.4
Gohir.D07G205600 Gossypium hirsutum HOM05D006090 ORTHO05D007600 3.6e-37 157.9 90 81.1
Manes.06G087700 Manihot esculenta HOM05D006090 ORTHO05D007600 3.6e-37 157.9 90 84.4
Gohir.A07G199200 Gossypium hirsutum HOM05D006090 ORTHO05D007600 4.7e-37 157.5 90 82.2
Hma1.2p1_0052F.1_g030080 Hydrangea macrophylla HOM05D006090 ORTHO05D007600 4.7e-37 157.5 90 82.2
Gorai.001G231600 Gossypium raimondii HOM05D006090 ORTHO05D007600 6.2e-37 157.1 90 81.1
MD10G1159900 Malus domestica HOM05D006090 ORTHO05D007600 6.2e-37 157.1 86 87.2
Prupe.8G199000 Prunus persica HOM05D006090 ORTHO05D007600 6.2e-37 157.1 87 83.9
ECA248G3406 Erigeron canadensis HOM05D006090 ORTHO05D007600 8.9e-36 153.3 90 76.7
FvH4_2g18550 Fragaria vesca HOM05D006090 ORTHO05D007600 1.2e-35 152.9 87 81.6
FAN15G1212 Fragaria x ananassa HOM05D006090 ORTHO05D007600 1.2e-35 152.9 87 81.6
Cc06_g17130 Coffea canephora HOM05D006090 ORTHO05D007600 1.5e-35 152.5 90 80.0
Potri.002G245800 Populus trichocarpa HOM05D006090 ORTHO05D007600 1.5e-35 152.5 90 82.2
PGR044G2731 Punica granatum HOM05D006090 ORTHO05D007600 1.5e-35 152.5 90 81.1
Thecc.02G015400 Theobroma cacao HOM05D006090 ORTHO05D007600 1.5e-35 152.5 90 81.1
Dinv19173 Davidia involucrata HOM05D006090 ORTHO05D007600 2.6e-35 151.8 90 78.9
TWI18G0803 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 2.6e-35 151.8 90 81.1
Aa31LG5G17800 Aethionema arabicum HOM05D006090 ORTHO05D007600 4.4e-35 151.0 90 81.1
Nn8g41078 Nelumbo nucifera HOM05D006090 ORTHO05D007600 4.4e-35 151.0 90 78.9
RcHm_v2.0_Chr6g0284111 Rosa chinensis HOM05D006090 ORTHO05D007600 4.4e-35 151.0 87 79.3
BcaB07g33788 Brassica carinata HOM05D006090 ORTHO05D007600 5.8e-35 150.6 94 81.9
Sp3g06170 Schrenkiella parvula HOM05D006090 ORTHO05D007600 5.8e-35 150.6 88 80.7
CSS0021939 Camellia sinensis var. sinensis HOM05D006090 ORTHO05D007600 7.5e-35 150.2 88 76.1
Duzib211G0047 Durio zibethinus HOM05D006090 ORTHO05D007600 1.7e-34 149.1 87 80.5
Duzib211G0371 Durio zibethinus HOM05D006090 ORTHO05D007600 1.7e-34 149.1 87 80.5
CANSAT21G0941 Cannabis sativa HOM05D006090 ORTHO05D007600 2.2e-34 148.7 87 81.6
Thecc.01G220300 Theobroma cacao HOM05D006090 ORTHO05D007600 2.2e-34 148.7 87 81.6
HanXRQChr01g0015271 Helianthus annuus HOM05D006090 ORTHO05D007600 3.7e-34 147.9 90 75.6
Lsat_1_v5_gn_8_5041 Lactuca sativa HOM05D006090 ORTHO05D007600 4.9e-34 147.5 90 77.8
MBI04_g03342_MAGBIO Magnolia biondii HOM05D006090 ORTHO05D007600 8.3e-34 146.7 90 75.6
vmacro14732 Vaccinium macrocarpon HOM05D006090 ORTHO05D007600 1.1e-33 146.4 87 77.0
BcaB04g21317 Brassica carinata HOM05D006090 ORTHO05D007600 1.4e-33 146.0 88 78.4
Medtr7g056250 Medicago truncatula HOM05D006090 ORTHO05D007600 1.9e-33 145.6 90 75.6
Rhsim01G0252800 Rhododendron simsii HOM05D006090 ORTHO05D007600 1.9e-33 145.6 90 75.6
TWI36G1609 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 1.9e-33 145.6 88 78.4
Oeu051534.1 Olea europaea HOM05D006090 ORTHO05D007600 2.4e-33 145.2 90 75.6
BNapus_Darmor_BZH_scaffold_109p00180 Brassica napus HOM05D006090 ORTHO05D007600 3.2e-33 144.8 88 80.7
Glyma.08G349000 Glycine max HOM05D006090 ORTHO05D007600 3.2e-33 144.8 90 75.6
Psat3g148760 Pisum sativum HOM05D006090 ORTHO05D007600 3.2e-33 144.8 90 75.6
Atru.chr6.1016 Acer truncatum HOM05D006090 ORTHO05D007600 4.1e-33 144.4 89 73.0
PSO170G6116 Papaver somniferum HOM05D006090 ORTHO05D007600 4.1e-33 144.4 90 74.4
Solyc01g005110.3 Solanum lycopersicum HOM05D006090 ORTHO05D007600 4.1e-33 144.4 90 74.4
Sopen01g001130 Solanum pennellii HOM05D006090 ORTHO05D007600 4.1e-33 144.4 90 74.4
TAR362G1026 Trochodendron aralioides HOM05D006090 ORTHO05D007600 4.1e-33 144.4 90 74.4
PSO445G0009 Papaver somniferum HOM05D006090 ORTHO05D007600 5.4e-33 144.1 90 74.4
Hma1.2p1_0226F.1_g095400 Hydrangea macrophylla HOM05D006090 ORTHO05D007600 7.0e-33 143.7 90 75.6
Lsat_1_v5_gn_5_180801 Lactuca sativa HOM05D006090 ORTHO05D007600 7.0e-33 143.7 84 78.6
SalBow6G1264 Salvia bowleyana HOM05D006090 ORTHO05D007600 7.0e-33 143.7 90 72.2
SalBow6G7055 Salvia bowleyana HOM05D006090 ORTHO05D007600 7.0e-33 143.7 90 72.2
TPR.G6479 Trifolium pratense HOM05D006090 ORTHO05D007600 7.0e-33 143.7 90 72.2
CiPaw.01G050400 Carya illinoinensis HOM05D006090 ORTHO05D007600 9.2e-33 143.3 90 77.8
ClCG10G009020 Citrullus lanatus HOM05D006090 ORTHO05D007600 9.2e-33 143.3 90 75.6
Migut.N03342 Erythranthe guttata HOM05D006090 ORTHO05D007600 1.2e-32 142.9 90 74.4
FAN24G0022 Fragaria x ananassa HOM05D006090 ORTHO05D007600 1.2e-32 142.9 100 70.0
EL10Ac7g17901 Beta vulgaris HOM05D006090 ORTHO05D007600 1.6e-32 142.5 90 73.3
Ca_06547_v3 Cicer arietinum L. HOM05D006090 ORTHO05D007600 2.1e-32 142.1 90 72.2
Sed0025432 Sechium edule HOM05D006090 ORTHO05D007600 2.7e-32 141.7 90 74.4
CAN.G282.104 Capsicum annuum HOM05D006090 ORTHO05D007600 3.5e-32 141.4 90 73.3
TWI75G0179 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 4.6e-32 141.0 90 76.7
CAN.G151.21 Capsicum annuum HOM05D006090 ORTHO05D007600 7.8e-32 140.2 90 74.4
Lalb_Chr03g0041481 Lupinus albus HOM05D006090 ORTHO05D007600 7.8e-32 140.2 88 73.9
Peaxi162Scf01111g00025 Petunia axillaris HOM05D006090 ORTHO05D007600 7.8e-32 140.2 90 74.4
QL02p097583 Quercus lobata HOM05D006090 ORTHO05D007600 7.8e-32 140.2 89 75.3
Lj5g0019908 Lotus japonicus HOM05D006090 ORTHO05D007600 1.0e-31 139.8 88 72.7
Lj1g0010865 Lotus japonicus HOM05D006090 ORTHO05D007600 1.3e-31 139.4 88 71.6
Phvul.002G080700 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 2.3e-31 138.7 86 74.4
Nitab4.5_0014260g0010 Nicotiana tabacum HOM05D006090 ORTHO05D007600 3.0e-31 138.3 90 72.2
QL09p032732 Quercus lobata HOM05D006090 ORTHO05D007600 3.0e-31 138.3 89 74.2
PGR004G1711 Punica granatum HOM05D006090 ORTHO05D007600 3.9e-31 137.9 89 73.0
GSVIVG01028416001 Vitis vinifera HOM05D006090 ORTHO05D007600 3.9e-31 137.9 88 75.0
Os02g0749450 Oryza sativa ssp. japonica HOM05D006090 ORTHO05D007600 5.1e-31 137.5 90 73.3
Sed0016973 Sechium edule HOM05D006090 ORTHO05D007600 5.1e-31 137.5 86 76.7
Nitab4.5_0000521g0090 Nicotiana tabacum HOM05D006090 ORTHO05D007600 6.6e-31 137.1 90 71.1
Phvul.002G081100 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 3.3e-30 134.8 90 72.2
Eucgr.A02241 Eucalyptus grandis HOM05D006090 ORTHO05D007600 5.6e-30 134.0 90 68.9
Cpa.g.sc71.6 Carica papaya HOM05D006090 ORTHO05D007600 9.5e-30 133.3 84 77.4
CDE09G0476 Ceratophyllum demersum HOM05D006090 ORTHO05D007600 1.6e-29 132.5 90 65.6
Zm00001eb059180 Zea mays HOM05D006090 ORTHO05D007600 1.6e-29 132.5 90 71.1
Ciclev10023078m.g Citrus clementina HOM05D006090 ORTHO05D007600 2.3e-28 128.6 76 77.6
arahy.Tifrunner.gnm1.ann1.7I8V6Q Arachis hypogaea HOM05D006090 ORTHO05D007600 4.0e-28 127.9 86 72.1
arahy.Tifrunner.gnm1.ann1.NKLH1V Arachis hypogaea HOM05D006090 ORTHO05D007600 5.2e-28 127.5 86 70.9
PGSC0003DMG400022770 Solanum tuberosum HOM05D006090 ORTHO05D007600 2.6e-27 125.2 124 54.0
unitig_8.g4837 Utricularia gibba HOM05D006090 ORTHO05D007600 4.4e-27 124.4 90 66.7
Cpa.g.sc428.3 Carica papaya HOM05D006090 ORTHO05D007600 5.8e-27 124.0 70 82.9
Duzib138G1257 Durio zibethinus HOM05D006090 ORTHO05D007600 9.9e-27 123.2 69 82.6
Medtr3g437420 Medicago truncatula HOM05D006090 ORTHO05D007600 9.9e-27 123.2 70 81.4
Haze_03967 Corylus avellana HOM05D006090 ORTHO05D007600 1.7e-26 122.5 97 62.9
BraA01t04392Z Brassica rapa HOM05D006090 ORTHO05D007600 4.9e-26 120.9 88 72.7
HPP92_023706 Vanilla planifolia HOM05D006090 ORTHO05D007600 6.4e-26 120.6 87 65.5
MELO3C026729.2 Cucumis melo HOM05D006090 ORTHO05D007600 3.2e-25 118.2 70 81.4
Actinidia30052 Actinidia chinensis HOM05D006090 ORTHO05D007600 2.3e-23 112.1 68 75.0
Rhsim13G0047700 Rhododendron simsii HOM05D006090 ORTHO05D007600 3.9e-23 111.3 71 76.1
Lj2C1126T3 Lonicera japonica HOM05D006090 ORTHO05D007600 5.1e-23 110.9 63 79.4
Phvul.009G016400 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 8.6e-23 110.2 66 77.3
Sabra02G0187100 Salix brachista HOM05D006090 ORTHO05D007600 2.4e-20 102.1 60 76.7
Eucgr.K03282 Eucalyptus grandis HOM05D006090 ORTHO05D007600 8.9e-20 100.1 57 82.5
CiPaw.02G023500 Carya illinoinensis HOM05D006090 ORTHO05D007600 4.4e-19 97.8 71 71.8
CDE02G0014 Ceratophyllum demersum HOM05D006090 ORTHO05D007600 7.6e-19 97.1 69 62.3
Haze_15253 Corylus avellana HOM05D006090 ORTHO05D007600 7.6e-19 97.1 86 60.5
Glyma.18G167500 Glycine max HOM05D006090 ORTHO05D007600 7.6e-19 97.1 58 79.3
Mapoly0057s0028 Marchantia polymorpha HOM05D006090 ORTHO05D007600 4.2e-17 91.3 89 53.9
TAR633G0277 Trochodendron aralioides HOM05D006090 ORTHO05D007600 3.9e-15 84.7 51 76.5
Pp3c20_9690 Physcomitrium patens HOM05D006090 ORTHO05D007600 5.1e-15 84.3 93 48.4
AagrBONN_evm.TU.Sc2ySwM_228.829 Anthoceros agrestis HOM05D006090 ORTHO05D007600 4.0e-12 74.7 90 46.7
arahy.Tifrunner.gnm1.ann1.L6G805 Arachis hypogaea HOM05D006090 ORTHO05D007600 8.4e-10 67.0 53 60.4
Nitab4.5_0001873g0080 Nicotiana tabacum HOM05D006090 ORTHO05D007600 4.2e-09 64.7 47 61.7
Carub.0003s0674 Capsella rubella HOM05D006090 ORTHO05D007600 1.0e-07 60.1 35 80.0
arahy.Tifrunner.gnm1.ann1.DI5ISS Arachis hypogaea HOM05D006090 ORTHO05D038896 6.6e-07 57.4 41 68.3
AUR62016546 Chenopodium quinoa HOM05D006090 ORTHO05D007600 8.7e-07 57.0 51 54.9
Aa31LG11G3540 Aethionema arabicum HOM05D006090 ORTHO05D007600 2.5e-06 55.5 34 67.6
arahy.Tifrunner.gnm1.ann1.3U8U6D Arachis hypogaea HOM05D054567 ORTHO05D007600 2.5e-06 55.5 33 72.7
AL3G18490 Arabidopsis lyrata HOM05D006090 ORTHO05D007600 4.3e-06 54.7 40 62.5


User provided reference genes

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