Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g35100 Schrenkiella parvula HOM05D005985 ORTHO05D007403 5.9e-126 454.1 217 100.0
BcaC05g27595 Brassica carinata HOM05D005985 ORTHO05D007403 1.7e-120 436.0 217 94.9
A05p21210 Brassica napus HOM05D005985 ORTHO05D007403 2.2e-120 435.6 217 94.5
BolC6t37315H Brassica oleracea HOM05D005985 ORTHO05D007403 4.8e-120 434.5 217 94.5
C05p35800 Brassica napus HOM05D005985 ORTHO05D007403 1.4e-119 433.0 217 94.0
BolC5t32296H Brassica oleracea HOM05D005985 ORTHO05D007403 2.4e-119 432.2 217 94.5
Carub.0001s3723 Capsella rubella HOM05D005985 ORTHO05D007403 2.4e-119 432.2 217 94.5
Thhalv10012121m.g Eutrema salsugineum HOM05D005985 ORTHO05D007403 2.0e-118 429.1 217 93.5
AT1G48130 Arabidopsis thaliana HOM05D005985 ORTHO05D007403 3.5e-118 428.3 217 93.1
BraA05t21027Z Brassica rapa HOM05D005985 ORTHO05D007403 2.2e-117 425.6 232 88.4
BcaB02g10720 Brassica carinata HOM05D005985 ORTHO05D007403 3.8e-117 424.9 217 92.6
BraA05t20750Z Brassica rapa HOM05D005985 ORTHO05D007403 3.8e-117 424.9 232 88.4
AL1G54700 Arabidopsis lyrata HOM05D005985 ORTHO05D007403 1.5e-116 422.9 217 92.6
CARHR037770 Cardamine hirsuta HOM05D005985 ORTHO05D007403 3.7e-112 408.3 215 89.8
Aa31LG10G5610 Aethionema arabicum HOM05D005985 ORTHO05D007403 6.3e-104 380.9 222 80.6
THA.LOC104821806 Tarenaya hassleriana HOM05D005985 ORTHO05D007403 1.5e-97 359.8 218 78.0
EL10Ac3g06274 Beta vulgaris HOM05D005985 ORTHO05D007403 1.3e-93 346.7 221 73.8
Eucgr.G02036 Eucalyptus grandis HOM05D005985 ORTHO05D007403 2.3e-93 345.9 223 74.0
Dinv29531 Davidia involucrata HOM05D005985 ORTHO05D007403 8.6e-93 344.0 220 72.3
GSVIVG01017666001 Vitis vinifera HOM05D005985 ORTHO05D007403 1.1e-92 343.6 221 73.8
PSO144G0010 Papaver somniferum HOM05D005985 ORTHO05D007403 1.5e-92 343.2 223 72.6
PSO210G5602 Papaver somniferum HOM05D005985 ORTHO05D007403 3.3e-92 342.0 221 72.4
PSO761G0261 Papaver somniferum HOM05D005985 ORTHO05D007403 3.3e-92 342.0 221 72.4
AUR62029991 Chenopodium quinoa HOM05D005985 ORTHO05D007403 4.3e-92 341.7 221 73.8
PGR031G1426 Punica granatum HOM05D005985 ORTHO05D007403 9.5e-92 340.5 223 72.6
Sc24g0001290 Simmondsia chinensis HOM05D005985 ORTHO05D007403 1.2e-91 340.1 221 71.0
AUR62002570 Chenopodium quinoa HOM05D005985 ORTHO05D007403 1.6e-91 339.7 221 73.8
HanXRQChr07g0194341 Helianthus annuus HOM05D005985 ORTHO05D007403 2.8e-91 339.0 221 71.9
Manes.15G003600 Manihot esculenta HOM05D005985 ORTHO05D007403 3.6e-91 338.6 223 72.2
MBI18_g28902_MAGBIO Magnolia biondii HOM05D005985 ORTHO05D007403 4.7e-91 338.2 221 71.0
Gorai.011G204600 Gossypium raimondii HOM05D005985 ORTHO05D007403 6.1e-91 337.8 221 71.5
Cfa015714 Carpinus fangiana HOM05D005985 ORTHO05D007403 1.8e-90 336.3 222 70.7
ECA233G5395 Erigeron canadensis HOM05D005985 ORTHO05D007403 1.8e-90 336.3 221 71.9
Haze_00800 Corylus avellana HOM05D005985 ORTHO05D007403 4.0e-90 335.1 221 69.7
CDE02G0842 Ceratophyllum demersum HOM05D005985 ORTHO05D007403 6.8e-90 334.3 221 68.3
Lsat_1_v5_gn_6_69481 Lactuca sativa HOM05D005985 ORTHO05D007403 6.8e-90 334.3 221 71.9
Phvul.002G189300 Phaseolus vulgaris HOM05D005985 ORTHO05D007403 6.8e-90 334.3 220 71.4
Solyc03g096040.3 Solanum lycopersicum HOM05D005985 ORTHO05D007403 6.8e-90 334.3 221 71.5
Gohir.A10G176000 Gossypium hirsutum HOM05D005985 ORTHO05D007403 8.9e-90 334.0 221 70.1
QL06p013713 Quercus lobata HOM05D005985 ORTHO05D007403 8.9e-90 334.0 221 69.2
Medtr4g094720 Medicago truncatula HOM05D005985 ORTHO05D007403 1.2e-89 333.6 220 71.4
Nitab4.5_0000781g0010 Nicotiana tabacum HOM05D005985 ORTHO05D007403 1.2e-89 333.6 218 71.1
ATR0796G055 Amborella trichopoda HOM05D005985 ORTHO05D007403 1.5e-89 333.2 221 69.7
Gohir.D10G182600 Gossypium hirsutum HOM05D005985 ORTHO05D007403 2.0e-89 332.8 221 70.6
Nn3g21870 Nelumbo nucifera HOM05D005985 ORTHO05D007403 2.0e-89 332.8 221 70.1
TPR.G31247 Trifolium pratense HOM05D005985 ORTHO05D007403 2.0e-89 332.8 220 70.9
TWI09G1588 Tripterygium wilfordii HOM05D005985 ORTHO05D007403 2.0e-89 332.8 221 69.7
Lj6A699T60 Lonicera japonica HOM05D005985 ORTHO05D007403 2.6e-89 332.4 221 71.9
Oeu020283.1 Olea europaea HOM05D005985 ORTHO05D007403 2.6e-89 332.4 216 73.1
Atru.chr4.3125 Acer truncatum HOM05D005985 ORTHO05D007403 4.4e-89 331.6 221 68.8
Glyma.08G088000 Glycine max HOM05D005985 ORTHO05D007403 5.7e-89 331.3 220 70.9
Ca_18238_v3 Cicer arietinum L. HOM05D005985 ORTHO05D007403 7.5e-89 330.9 220 70.0
Peaxi162Scf00103g01922 Petunia axillaris HOM05D005985 ORTHO05D007403 7.5e-89 330.9 221 70.6
Lalb_Chr07g0188301 Lupinus albus HOM05D005985 ORTHO05D007403 1.7e-88 329.7 220 70.9
Potri.008G099900 Populus trichocarpa HOM05D005985 ORTHO05D007403 1.7e-88 329.7 221 71.5
SGA_v2.0_scaffold64G22045 Striga asiatica HOM05D005985 ORTHO05D007403 2.2e-88 329.3 223 70.0
DCAR_023383 Daucus carota HOM05D005985 ORTHO05D007403 2.9e-88 328.9 221 69.2
Duzib128G0500 Durio zibethinus HOM05D005985 ORTHO05D007403 4.9e-88 328.2 221 70.1
Sopen03g026120 Solanum pennellii HOM05D005985 ORTHO05D007403 4.9e-88 328.2 221 70.1
Duzib128G2054 Durio zibethinus HOM05D005985 ORTHO05D007403 6.4e-88 327.8 221 70.1
Actinidia02521 Actinidia chinensis HOM05D005985 ORTHO05D007403 8.3e-88 327.4 223 68.6
Duzib212G0534 Durio zibethinus HOM05D005985 ORTHO05D007403 8.3e-88 327.4 221 69.7
Os07g0638300 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 8.3e-88 327.4 223 69.1
arahy.Tifrunner.gnm1.ann1.7BH383 Arachis hypogaea HOM05D005985 ORTHO05D007403 1.1e-87 327.0 221 69.2
arahy.Tifrunner.gnm1.ann1.BM2Q5K Arachis hypogaea HOM05D005985 ORTHO05D007403 1.1e-87 327.0 221 69.2
CANSAT78G1051 Cannabis sativa HOM05D005985 ORTHO05D007403 1.1e-87 327.0 221 67.9
MD13G1144500 Malus domestica HOM05D005985 ORTHO05D007403 1.1e-87 327.0 221 67.4
Prupe.1G109000 Prunus persica HOM05D005985 ORTHO05D007403 1.1e-87 327.0 222 70.3
Lj4g0025954 Lotus japonicus HOM05D005985 ORTHO05D007403 1.4e-87 326.6 222 69.4
Sabra08G0075600 Salix brachista HOM05D005985 ORTHO05D007403 1.4e-87 326.6 221 71.0
VMungo0251G0059 Vigna mungo HOM05D005985 ORTHO05D007403 1.8e-87 326.2 220 69.1
Nitab4.5_0000204g0010 Nicotiana tabacum HOM05D005985 ORTHO05D007403 3.2e-87 325.5 218 69.3
HPP92_020535 Vanilla planifolia HOM05D005985 ORTHO05D007403 5.4e-87 324.7 223 67.7
RcHm_v2.0_Chr4g0426681 Rosa chinensis HOM05D005985 ORTHO05D007403 2.0e-86 322.8 221 68.3
Psat7g085840 Pisum sativum HOM05D005985 ORTHO05D007403 2.7e-86 322.4 220 69.1
Aqoxy2G02563 Aquilegia oxysepala HOM05D005985 ORTHO05D007403 4.6e-86 321.6 221 69.7
Cpa.g.sc146.45 Carica papaya HOM05D005985 ORTHO05D007403 5.9e-86 321.2 221 66.1
PGSC0003DMG400027720 Solanum tuberosum HOM05D005985 ORTHO05D007403 5.9e-86 321.2 221 69.2
TAR362G0466 Trochodendron aralioides HOM05D005985 ORTHO05D007403 1.0e-85 320.5 247 63.2
CsaV3_3G015450 Cucumis sativus L. HOM05D005985 ORTHO05D007403 3.0e-85 318.9 221 64.7
Zm00001eb328770 Zea mays HOM05D005985 ORTHO05D007403 3.9e-85 318.5 229 64.2
Manes.03G210400 Manihot esculenta HOM05D005985 ORTHO05D007403 6.6e-85 317.8 223 67.3
CSS0012631 Camellia sinensis var. sinensis HOM05D005985 ORTHO05D007403 1.9e-84 316.2 230 65.7
FAN17G1815 Fragaria x ananassa HOM05D005985 ORTHO05D007403 7.3e-84 314.3 221 66.1
ClCG05G006800 Citrullus lanatus HOM05D005985 ORTHO05D007403 2.8e-83 312.4 221 64.3
Migut.G00012 Erythranthe guttata HOM05D005985 ORTHO05D007403 3.6e-83 312.0 217 70.0
SalBow8G2871 Salvia bowleyana HOM05D005985 ORTHO05D007403 8.0e-83 310.8 223 66.4
MELO3C006744.2 Cucumis melo HOM05D005985 ORTHO05D007403 1.0e-82 310.5 235 62.1
Migut.O00392 Erythranthe guttata HOM05D005985 ORTHO05D007403 6.8e-82 307.8 225 67.1
Duzib212G0439 Durio zibethinus HOM05D005985 ORTHO05D007403 1.2e-81 307.0 221 67.4
FvH4_4g21120 Fragaria vesca HOM05D005985 ORTHO05D007403 1.2e-81 307.0 214 67.8
unitig_88.g27789 Utricularia gibba HOM05D000412 ORTHO05D007403 4.4e-81 305.1 223 64.1
Os07g0638400 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 7.5e-81 304.3 223 64.6
Ciclev10007138m.g Citrus clementina HOM05D005985 ORTHO05D007403 4.9e-80 301.6 213 67.1
SEGI_14508 Sequoiadendron giganteum HOM05D005985 ORTHO05D007403 4.6e-78 295.0 217 62.2
Nn4g25416 Nelumbo nucifera HOM05D005985 ORTHO05D007403 6.0e-78 294.7 301 50.8
Rhsim02G0000600 Rhododendron simsii HOM05D005985 ORTHO05D007403 2.3e-77 292.7 221 62.0
SMO367G0796 Selaginella moellendorffii HOM05D005985 ORTHO05D007403 1.1e-76 290.4 223 59.6
Mapoly0057s0102 Marchantia polymorpha HOM05D005985 ORTHO05D007403 1.2e-73 280.4 221 58.8
Pp3c22_8470 Physcomitrium patens HOM05D005985 ORTHO05D007403 5.8e-73 278.1 221 61.1
CAN.G546.41 Capsicum annuum HOM05D005985 ORTHO05D007403 1.9e-71 273.1 221 62.0
AagrBONN_evm.TU.Sc2ySwM_228.1443 Anthoceros agrestis HOM05D005985 ORTHO05D007403 4.1e-71 271.9 222 57.2
CBR_g8949 Chara braunii HOM05D005985 ORTHO05D007403 1.5e-68 263.5 220 58.6
AagrBONN_evm.TU.Sc2ySwM_117.1081 Anthoceros agrestis HOM05D005985 ORTHO05D007403 3.1e-66 255.8 217 54.4
Pp3c10_21340 Physcomitrium patens HOM05D005985 ORTHO05D007403 4.0e-66 255.4 216 53.7
Pp3c20_21100 Physcomitrium patens HOM05D005985 ORTHO05D007403 2.0e-65 253.1 216 52.3
Mapoly0042s0090 Marchantia polymorpha HOM05D005985 ORTHO05D007403 1.7e-64 250.0 216 53.2
SMO147G0228 Selaginella moellendorffii HOM05D005985 ORTHO05D007403 2.1e-62 243.0 218 47.7
SEGI_03003 Sequoiadendron giganteum HOM05D005985 ORTHO05D007403 2.1e-62 243.0 216 50.5
COL.COLO4_34540 Corchorus olitorius HOM05D005985 ORTHO05D007403 6.0e-62 241.5 171 67.8
PRCOL_00004927 Prasinoderma coloniale HOM05D005985 ORTHO05D007403 7.8e-54 214.5 219 46.6
AagrBONN_evm.TU.Sc2ySwM_228.1273 Anthoceros agrestis HOM05D005985 ORTHO05D007403 3.0e-53 212.6 220 45.9
Cfa026758 Carpinus fangiana HOM05D005985 ORTHO05D007403 7.9e-46 188.0 219 42.9
Glyma.05G133500 Glycine max HOM05D005985 ORTHO05D007403 1.5e-44 183.7 107 74.8
C06p21300 Brassica napus HOM05D005985 ORTHO05D007403 2.5e-44 183.0 87 92.0
Haze_27189 Corylus avellana HOM05D005985 ORTHO05D007403 9.0e-42 174.5 213 40.4
Thecc.04G309900 Theobroma cacao HOM05D005985 ORTHO05D007403 4.5e-41 172.2 134 63.4
AagrBONN_evm.TU.Sc2ySwM_344.4472 Anthoceros agrestis HOM05D005985 ORTHO05D007403 5.5e-39 165.2 211 38.9
Nn1g05419 Nelumbo nucifera HOM05D005985 ORTHO05D007403 1.9e-36 156.8 89 75.3
GSVIVG01034909001 Vitis vinifera HOM05D005985 ORTHO05D007403 2.4e-34 149.8 118 62.7
Glyma.05G133466 Glycine max HOM05D005985 ORTHO05D007403 9.0e-34 147.9 109 67.9
MD16G1139600 Malus domestica HOM05D005985 ORTHO05D007403 1.2e-33 147.5 184 45.1
Nn1g05808 Nelumbo nucifera HOM05D005985 ORTHO05D007403 1.2e-30 137.5 95 66.3
Gorai.001G249700 Gossypium raimondii HOM05D005985 ORTHO05D007403 1.1e-28 131.0 75 74.7
Gohir.D01G126866 Gossypium hirsutum HOM05D005985 ORTHO05D007403 1.1e-26 124.4 74 73.0
Gorai.002G157500 Gossypium raimondii HOM05D005985 ORTHO05D007403 5.9e-25 118.6 74 70.3
GSVIVG01017665001 Vitis vinifera HOM05D005985 ORTHO05D007403 1.1e-23 114.4 104 56.7
MSTRG.5906 Avicennia marina HOM05D003127 ORTHO05D003709 1.1e-20 104.4 176 31.8
Sopen01g003280 Solanum pennellii HOM05D003127 ORTHO05D003709 9.7e-20 101.3 176 31.2
BcaC01g01496 Brassica carinata HOM05D005985 ORTHO05D007403 4.5e-17 92.4 217 33.2
CBR_g34275 Chara braunii HOM05D003127 ORTHO05D003709 7.7e-17 91.7 177 29.9
Cc03_g00310 Coffea canephora HOM05D005985 ORTHO05D007403 2.5e-15 86.7 62 67.7
PRCOL_00005818 Prasinoderma coloniale HOM05D003127 ORTHO05D003709 2.7e-14 83.2 169 29.0
Glyma.19G198200 Glycine max HOM05D003127 ORTHO05D003709 1.7e-11 73.9 154 29.9
Lalb_Chr13g0293491 Lupinus albus HOM05D005985 ORTHO05D007403 1.7e-08 63.9 39 64.1
CANSAT56G1179 Cannabis sativa HOM05D004597 ORTHO05D005629 4.2e-07 59.3 152 24.3
Nn6g35647 Nelumbo nucifera HOM05D004597 ORTHO05D005629 1.6e-06 57.4 155 21.9
FvH4_4g15322 Fragaria vesca HOM05D003127 ORTHO05D000062 4.7e-06 55.8 80 36.2
Solyc07g042440.3 Solanum lycopersicum HOM05D004597 ORTHO05D005629 6.1e-06 55.5 131 23.7
Sopen07g022070 Solanum pennellii HOM05D004597 ORTHO05D005629 6.1e-06 55.5 131 23.7
PGSC0003DMG400013551 Solanum tuberosum HOM05D004597 ORTHO05D005629 6.1e-06 55.5 131 23.7


User provided reference genes

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