Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g34910 Schrenkiella parvula HOM05D008359 ORTHO05D010300 5.4e-42 175.3 222 100.0
CARHR037590 Cardamine hirsuta HOM05D008359 ORTHO05D010300 3.1e-21 106.3 109 90.8
AT1G47970 Arabidopsis thaliana HOM05D008359 ORTHO05D010300 5.2e-21 105.5 106 92.5
BolC6t35360H Brassica oleracea HOM05D008359 ORTHO05D010300 6.9e-21 105.1 108 90.7
BraA06t23682Z Brassica rapa HOM05D008359 ORTHO05D010300 6.9e-21 105.1 106 92.5
AL1G54480 Arabidopsis lyrata HOM05D008359 ORTHO05D010300 4.4e-20 102.4 107 90.7
A06p04780 Brassica napus HOM05D008359 ORTHO05D010300 8.4e-19 98.2 107 90.7
BcaC08g42993 Brassica carinata HOM05D008359 ORTHO05D010300 2.4e-18 96.7 53 94.3
Carub.0001s3705 Capsella rubella HOM05D008359 ORTHO05D010300 7.8e-17 91.7 97 88.7
C06p02350 Brassica napus HOM05D008359 ORTHO05D010300 5.1e-16 89.0 53 88.7
Aa31LG10G5820 Aethionema arabicum HOM05D000167 ORTHO05D000465 3.3e-15 86.3 95 91.6
BcaB07g33802 Brassica carinata HOM05D008359 ORTHO05D010300 1.3e-11 74.3 55 78.2
Prupe.1G113500 Prunus persica HOM05D008359 ORTHO05D010300 6.4e-11 72.0 89 85.4
CARHR092430 Cardamine hirsuta HOM05D014329 ORTHO05D014763 2.7e-09 66.6 112 65.2
CANSAT78G0680 Cannabis sativa HOM05D008359 ORTHO05D010300 1.3e-08 64.3 86 81.4
Atru.chr4.3060 Acer truncatum HOM05D008359 ORTHO05D010300 1.8e-08 63.9 89 80.9
MD16G1149800 Malus domestica HOM05D008359 ORTHO05D010300 3.0e-08 63.2 34 91.2
Haze_01345 Corylus avellana HOM05D008359 ORTHO05D010300 8.7e-08 61.6 31 96.8
Duzib212G0105 Durio zibethinus HOM05D008359 ORTHO05D010300 1.9e-07 60.5 106 71.7
FAN07G0737 Fragaria x ananassa HOM05D008359 ORTHO05D010300 1.9e-07 60.5 35 82.9
FAN12G0153 Fragaria x ananassa HOM05D008359 ORTHO05D010300 1.9e-07 60.5 82 84.1
unitig_749.g13356 Utricularia gibba HOM05D008359 ORTHO05D010300 4.3e-07 59.3 85 64.7
C05p49300 Brassica napus HOM05D014329 ORTHO05D014763 5.6e-07 58.9 53 69.8
MBI19_g03271_MAGBIO Magnolia biondii HOM05D008359 ORTHO05D010300 5.6e-07 58.9 37 83.8
SGA_v2.0_scaffold227G43229 Striga asiatica HOM05D008359 ORTHO05D010300 5.6e-07 58.9 38 81.6
MD13G1149500 Malus domestica HOM05D008359 ORTHO05D010300 9.6e-07 58.2 106 64.2
Nitab4.5_0000289g0010 Nicotiana tabacum HOM05D008359 ORTHO05D010300 9.6e-07 58.2 32 90.6
Sp3g15360 Schrenkiella parvula HOM05D009524 ORTHO05D014763 9.6e-07 58.2 56 66.1
SGA_v2.0_scaffold246G44799 Striga asiatica HOM05D008359 ORTHO05D010300 9.6e-07 58.2 40 82.5
Thecc.04G305300 Theobroma cacao HOM05D008359 ORTHO05D010300 9.6e-07 58.2 29 96.6
PGR031G3777 Punica granatum HOM05D008359 ORTHO05D010300 1.3e-06 57.8 35 85.7
RcHm_v2.0_Chr4g0425941 Rosa chinensis HOM05D008359 ORTHO05D010300 1.3e-06 57.8 33 84.8
THA.LOC104820317 Tarenaya hassleriana HOM05D008359 ORTHO05D010300 2.8e-06 56.6 79 75.9
BcaC05g28822 Brassica carinata HOM05D014329 ORTHO05D014763 3.6e-06 56.2 43 72.1
HanXRQChr01g0022331 Helianthus annuus HOM05D008359 ORTHO05D010300 3.6e-06 56.2 38 78.9
Lj3P834T33 Lonicera japonica HOM05D008359 ORTHO05D010300 3.6e-06 56.2 28 96.4
Nitab4.5_0004298g0050 Nicotiana tabacum HOM05D008359 ORTHO05D010300 3.6e-06 56.2 35 82.9
Oeu044729.1 Olea europaea HOM05D008359 ORTHO05D010300 3.6e-06 56.2 29 93.1
Sabra10G0114500 Salix brachista HOM05D008359 ORTHO05D010300 3.6e-06 56.2 30 90.0
BolC5t33671H Brassica oleracea HOM05D014329 ORTHO05D014763 4.8e-06 55.8 33 84.8
ECA246G4255 Erigeron canadensis HOM05D008359 ORTHO05D010300 6.2e-06 55.5 33 81.8
PGSC0003DMG400001152 Solanum tuberosum HOM05D028028 ORTHO05D010300 8.1e-06 55.1 28 96.4


User provided reference genes

Program Settings