Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g34810 Schrenkiella parvula HOM05D007627 ORTHO05D009640 2.0e-43 178.7 91 100.0
BcaC08g42976 Brassica carinata HOM05D007627 ORTHO05D009640 4.2e-33 144.4 92 80.4
BcaB07g33814 Brassica carinata HOM05D007627 ORTHO05D009640 1.6e-32 142.5 92 79.3
Thhalv10011898m.g Eutrema salsugineum HOM05D007627 ORTHO05D009640 1.3e-31 139.4 94 79.8
AL1G54240 Arabidopsis lyrata HOM05D007627 ORTHO05D009640 3.2e-25 118.2 96 68.8
CARHR037420 Cardamine hirsuta HOM05D007627 ORTHO05D009640 5.5e-25 117.5 95 70.5
AT1G47820 Arabidopsis thaliana HOM05D007627 ORTHO05D009640 9.3e-25 116.7 97 70.1
Carub.0001s3677 Capsella rubella HOM05D007627 ORTHO05D009640 2.3e-23 112.1 98 69.4
Carub.0001s3693 Capsella rubella HOM05D007627 ORTHO05D009640 5.1e-23 110.9 97 69.1
Carub.0001s3680 Capsella rubella HOM05D007627 ORTHO05D009640 1.5e-22 109.4 99 69.7
Aa31LG2G19210 Aethionema arabicum HOM05D007627 ORTHO05D009640 4.3e-22 107.8 89 64.0
A10p06200 Brassica napus HOM05D007627 ORTHO05D009640 2.2e-18 95.5 92 59.8
BraA10t42888Z Brassica rapa HOM05D007627 ORTHO05D009640 2.2e-18 95.5 92 59.8
C06p02170 Brassica napus HOM05D007627 ORTHO05D009640 5.0e-18 94.4 92 58.7
BolC6t35346H Brassica oleracea HOM05D007627 ORTHO05D009640 3.6e-16 88.2 92 57.6
Medtr7g007290 Medicago truncatula HOM05D007627 ORTHO05D009640 4.6e-16 87.8 92 48.9
Sed0009470 Sechium edule HOM05D007627 ORTHO05D009640 4.6e-16 87.8 92 51.1
MD03G1295800 Malus domestica HOM05D007627 ORTHO05D009640 6.1e-16 87.4 91 54.9
Manes.05G003000 Manihot esculenta HOM05D007627 ORTHO05D009640 1.4e-15 86.3 92 50.0
RcHm_v2.0_Chr7g0241611 Rosa chinensis HOM05D007627 ORTHO05D009640 3.0e-15 85.1 92 52.2
MELO3C010153.2 Cucumis melo HOM05D007627 ORTHO05D009640 5.1e-15 84.3 92 47.8
Lalb_Chr04g0257421 Lupinus albus HOM05D007627 ORTHO05D009640 6.7e-15 84.0 92 51.1
Atru.chr5.1007 Acer truncatum HOM05D007627 ORTHO05D009640 1.5e-14 82.8 92 47.8
CANSAT78G1399 Cannabis sativa HOM05D007627 ORTHO05D009640 1.9e-14 82.4 93 51.6
Ca_04047_v3 Cicer arietinum L. HOM05D007627 ORTHO05D009640 1.9e-14 82.4 92 50.0
ClCG10G011370 Citrullus lanatus HOM05D007627 ORTHO05D009640 1.9e-14 82.4 92 48.9
THA.LOC104824213 Tarenaya hassleriana HOM05D007627 ORTHO05D009640 1.9e-14 82.4 61 65.6
CsaV3_1G045260 Cucumis sativus L. HOM05D007627 ORTHO05D009640 2.5e-14 82.0 92 46.7
Lj1g0016177 Lotus japonicus HOM05D007627 ORTHO05D009640 2.5e-14 82.0 91 48.4
QL02p088799 Quercus lobata HOM05D007627 ORTHO05D009640 7.4e-14 80.5 93 51.6
TPR.G35989 Trifolium pratense HOM05D007627 ORTHO05D009640 7.4e-14 80.5 90 46.7
FAN25G0556 Fragaria x ananassa HOM05D007627 ORTHO05D009640 1.3e-13 79.7 91 51.6
Actinidia21001 Actinidia chinensis HOM05D007627 ORTHO05D009640 2.8e-13 78.6 91 47.3
Lalb_Chr10g0091241 Lupinus albus HOM05D007627 ORTHO05D009640 2.8e-13 78.6 92 48.9
Cc02_g30590 Coffea canephora HOM05D007627 ORTHO05D009640 3.7e-13 78.2 91 49.5
FvH4_3g25590 Fragaria vesca HOM05D007627 ORTHO05D009640 3.7e-13 78.2 91 50.5
FAN11G3818 Fragaria x ananassa HOM05D007627 ORTHO05D009640 3.7e-13 78.2 91 50.5
Phvul.008G006000 Phaseolus vulgaris HOM05D007627 ORTHO05D009640 3.7e-13 78.2 94 51.1
COL.COLO4_23238 Corchorus olitorius HOM05D007627 ORTHO05D009640 4.8e-13 77.8 83 54.2
Haze_05035 Corylus avellana HOM05D007627 ORTHO05D009640 4.8e-13 77.8 82 57.3
FAN16G0578 Fragaria x ananassa HOM05D007627 ORTHO05D009640 4.8e-13 77.8 91 51.6
Ah.10g033580 Amaranthus hybridus HOM05D004014 ORTHO05D005890 6.3e-13 77.4 76 55.3
Ciclev10023058m.g Citrus clementina HOM05D007627 ORTHO05D009640 6.3e-13 77.4 93 47.3
Dinv33113 Davidia involucrata HOM05D000361 ORTHO05D005006 6.3e-13 77.4 91 49.5
Prupe.8G271600 Prunus persica HOM05D007627 ORTHO05D009640 6.3e-13 77.4 91 50.5
Thecc.01G312700 Theobroma cacao HOM05D007627 ORTHO05D009640 6.3e-13 77.4 78 57.7
Eucgr.H01048 Eucalyptus grandis HOM05D007627 ORTHO05D009640 1.1e-12 76.6 91 50.5
FAN21G2770 Fragaria x ananassa HOM05D007627 ORTHO05D009640 1.1e-12 76.6 91 50.5
Sc17g0000480 Simmondsia chinensis HOM05D007627 ORTHO05D009640 1.1e-12 76.6 89 46.1
Psat3g205400 Pisum sativum HOM05D007627 ORTHO05D009640 1.4e-12 76.3 92 46.7
QL12p020023 Quercus lobata HOM05D007627 ORTHO05D009640 1.4e-12 76.3 92 48.9
VMungo1383G2294 Vigna mungo HOM05D007627 ORTHO05D009640 1.4e-12 76.3 93 51.6
Cfa005805 Carpinus fangiana HOM05D007627 ORTHO05D009640 1.8e-12 75.9 81 56.8
Potri.014G121300 Populus trichocarpa HOM05D007627 ORTHO05D009640 1.8e-12 75.9 77 51.9
Duzib192G0243 Durio zibethinus HOM05D007627 ORTHO05D009640 2.4e-12 75.5 85 51.8
Sabra14G0090000 Salix brachista HOM05D007627 ORTHO05D009640 2.4e-12 75.5 65 60.0
MSTRG.21216 Avicennia marina HOM05D007627 ORTHO05D009640 4.1e-12 74.7 87 47.1
Gohir.D11G114900 Gossypium hirsutum HOM05D007627 ORTHO05D009640 5.3e-12 74.3 83 49.4
Gorai.007G123100 Gossypium raimondii HOM05D007627 ORTHO05D009640 5.3e-12 74.3 83 49.4
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 6.9e-12 73.9 77 57.1
Gohir.A11G109700 Gossypium hirsutum HOM05D007627 ORTHO05D009640 9.1e-12 73.6 83 48.2
Cpa.g.sc18.36 Carica papaya HOM05D007627 ORTHO05D009640 1.2e-11 73.2 80 47.5
Glyma.18G296500 Glycine max HOM05D007627 ORTHO05D009640 1.2e-11 73.2 77 53.2
CiPaw.07G117000 Carya illinoinensis HOM05D007627 ORTHO05D009640 2.0e-11 72.4 92 48.9
AUR62044233 Chenopodium quinoa HOM05D007627 ORTHO05D009640 2.0e-11 72.4 75 52.0
SalBow8G4146 Salvia bowleyana HOM05D007627 ORTHO05D009640 2.6e-11 72.0 91 44.0
AUR62037635 Chenopodium quinoa HOM05D007627 ORTHO05D009640 4.5e-11 71.2 75 50.7
CSS0016321 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 5.9e-11 70.9 79 51.9
Cfa005807 Carpinus fangiana HOM05D007627 ORTHO05D009640 7.7e-11 70.5 83 53.0
TAR381G1624 Trochodendron aralioides HOM05D007627 ORTHO05D009640 7.7e-11 70.5 85 44.7
HanXRQChr01g0000791 Helianthus annuus HOM05D007627 ORTHO05D009640 1.0e-10 70.1 89 44.9
Actinidia25845 Actinidia chinensis HOM05D007627 ORTHO05D009640 1.3e-10 69.7 91 42.9
CSS0031687 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 1.7e-10 69.3 79 50.6
Dinv10091 Davidia involucrata HOM05D007627 ORTHO05D009640 1.7e-10 69.3 77 49.4
Sopen01g041030 Solanum pennellii HOM05D007627 ORTHO05D009640 1.7e-10 69.3 75 50.7
EL10Ac2g03554 Beta vulgaris HOM05D007627 ORTHO05D009640 2.2e-10 68.9 75 53.3
CAN.G134.101 Capsicum annuum HOM05D007627 ORTHO05D009640 2.2e-10 68.9 91 44.0
Os06g0717300 Oryza sativa ssp. japonica HOM05D007627 ORTHO05D009640 2.2e-10 68.9 92 44.6
Solyc01g097360.4 Solanum lycopersicum HOM05D007627 ORTHO05D009640 2.2e-10 68.9 75 50.7
ECA248G3246 Erigeron canadensis HOM05D007627 ORTHO05D009640 2.9e-10 68.6 89 44.9
Rhsim01G0290400 Rhododendron simsii HOM05D007627 ORTHO05D009640 2.9e-10 68.6 90 42.2
Nitab4.5_0001592g0100 Nicotiana tabacum HOM05D007627 ORTHO05D009640 8.5e-10 67.0 91 44.0
Medtr7g007300 Medicago truncatula HOM05D000007 ORTHO05D000017 1.1e-09 66.6 71 45.1
Peaxi162Scf00282g00336 Petunia axillaris HOM05D007627 ORTHO05D009640 1.1e-09 66.6 89 43.8
DCAR_005763 Daucus carota HOM05D000361 ORTHO05D005006 1.4e-09 66.2 75 54.7
PGR119G1365 Punica granatum HOM05D007627 ORTHO05D009640 2.5e-09 65.5 91 45.1
Hma1.2p1_0212F.1_g089970 Hydrangea macrophylla HOM05D007627 ORTHO05D009640 3.2e-09 65.1 65 53.8
Migut.B01085 Erythranthe guttata HOM05D007627 ORTHO05D009640 4.2e-09 64.7 77 51.9
Nitab4.5_0012228g0040 Nicotiana tabacum HOM05D007627 ORTHO05D009640 5.5e-09 64.3 91 42.9
HPP92_022749 Vanilla planifolia HOM05D007627 ORTHO05D009640 5.5e-09 64.3 84 48.8
Lsat_1_v5_gn_5_191420 Lactuca sativa HOM05D007627 ORTHO05D009640 9.4e-09 63.5 76 43.4
Aqoxy1G00002 Aquilegia oxysepala HOM05D007627 ORTHO05D009640 1.2e-08 63.2 78 43.6
AT1G47813 Arabidopsis thaliana HOM05D007627 ORTHO05D009640 1.2e-08 63.2 92 47.8
Oeu038438.1 Olea europaea HOM05D007627 ORTHO05D009640 1.2e-08 63.2 89 39.3
Zm00001eb228130 Zea mays HOM05D007627 ORTHO05D009640 1.2e-08 63.2 86 47.7
PSO700G0179 Papaver somniferum HOM05D007627 ORTHO05D009640 2.7e-08 62.0 61 54.1
unitig_578.g15942 Utricularia gibba HOM05D007627 ORTHO05D009640 4.7e-08 61.2 78 46.2
HanXRQChr11g0329361 Helianthus annuus HOM05D007627 ORTHO05D009640 6.1e-08 60.8 75 49.3
ATR0807G116 Amborella trichopoda HOM05D007627 ORTHO05D009640 6.7e-07 57.4 62 48.4
CDE04G1409 Ceratophyllum demersum HOM05D000443 ORTHO05D001066 1.1e-06 56.6 79 41.8
SHI28956 Sapria himalayana HOM05D000002 ORTHO05D000001 3.3e-06 55.1 62 40.3


User provided reference genes

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