Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g34730 Schrenkiella parvula HOM05D003814 ORTHO05D004399 1.9e-225 785.4 373 100.0
Sp1g34780 Schrenkiella parvula HOM05D003814 ORTHO05D004399 1.2e-163 580.1 338 82.8
SpUn1086_0010 Schrenkiella parvula HOM05D003814 ORTHO05D004399 1.4e-143 513.5 314 78.0
A04p14880 Brassica napus HOM05D003814 ORTHO05D004399 5.5e-140 501.5 371 67.4
BraA04t17126Z Brassica rapa HOM05D003814 ORTHO05D004399 5.5e-140 501.5 371 67.4
Thhalv10028265m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 4.0e-130 468.8 382 63.6
Sp1g34880 Schrenkiella parvula HOM05D003814 ORTHO05D004399 1.7e-128 463.4 374 65.2
CARHR272950 Cardamine hirsuta HOM05D003814 ORTHO05D004399 2.3e-117 426.4 369 60.4
Carub.0007s3375 Capsella rubella HOM05D003814 ORTHO05D004399 9.8e-105 384.4 371 56.6
C04p48950 Brassica napus HOM05D003814 ORTHO05D004399 4.6e-102 375.6 376 54.3
BolC4t26476H Brassica oleracea HOM05D003814 ORTHO05D004399 4.6e-102 375.6 376 54.3
Carub.0007s3374 Capsella rubella HOM05D003814 ORTHO05D004399 2.2e-96 356.7 367 53.7
Thhalv10029417m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 8.6e-93 344.7 370 52.4
BcaB06g27653 Brassica carinata HOM05D003814 ORTHO05D004399 9.5e-92 341.3 367 51.5
Thhalv10028201m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 4.0e-90 335.9 323 57.6
A09p14840 Brassica napus HOM05D003814 ORTHO05D004399 6.6e-85 318.5 363 48.5
BraA09t37130Z Brassica rapa HOM05D003814 ORTHO05D004399 1.1e-84 317.8 382 48.4
BcaC04g22552 Brassica carinata HOM05D003814 ORTHO05D004399 2.8e-83 313.2 362 48.6
BolC9t54693H Brassica oleracea HOM05D003814 ORTHO05D004399 2.8e-83 313.2 362 48.6
BcaB07g31449 Brassica carinata HOM05D003814 ORTHO05D004399 8.1e-83 311.6 384 46.6
C09p17970 Brassica napus HOM05D003814 ORTHO05D004399 2.4e-82 310.1 362 48.3
AL2G10680 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 6.9e-82 308.5 363 46.6
AT1G64295 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 1.1e-76 291.2 370 44.6
Carub.0002s0052 Capsella rubella HOM05D003814 ORTHO05D004399 2.5e-76 290.0 369 45.8
Aa31LG2G1300 Aethionema arabicum HOM05D003814 ORTHO05D004399 3.3e-76 289.7 359 45.4
AL2G10650 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 1.3e-75 287.7 384 42.7
CARHR290110 Cardamine hirsuta HOM05D003814 ORTHO05D004399 8.1e-75 285.0 375 44.3
AT1G64290 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 6.9e-74 282.0 370 44.6
BcaB07g31514 Brassica carinata HOM05D003814 ORTHO05D004399 3.4e-73 279.6 365 43.8
Thhalv10023822m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 3.8e-72 276.2 365 43.3
CARHR050300 Cardamine hirsuta HOM05D003814 ORTHO05D004399 8.4e-72 275.0 356 44.1
BcaC04g22634 Brassica carinata HOM05D003814 ORTHO05D004399 3.7e-67 259.6 357 43.4
Carub.0007s3376 Capsella rubella HOM05D003814 ORTHO05D004399 4.8e-67 259.2 373 43.4
Carub.0002s0053 Capsella rubella HOM05D003814 ORTHO05D004399 8.1e-67 258.5 363 41.9
Sp7g03960 Schrenkiella parvula HOM05D003814 ORTHO05D004399 1.8e-66 257.3 370 41.9
BraA09t37073Z Brassica rapa HOM05D003814 ORTHO05D004399 3.4e-65 253.1 315 45.7
A02p10510 Brassica napus HOM05D003814 ORTHO05D004399 3.0e-61 240.0 381 40.2
C02p17570 Brassica napus HOM05D003814 ORTHO05D004399 6.0e-54 215.7 362 39.5
Potri.008G038000 Populus trichocarpa HOM05D003814 ORTHO05D004399 6.7e-53 212.2 377 36.6
Ciclev10007128m.g Citrus clementina HOM05D003814 ORTHO05D004399 2.6e-49 200.3 301 38.9
Potri.010G224400 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.0e-48 198.4 364 35.4
AL7G47620 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 2.9e-48 196.8 162 61.1
CiPaw.01G298600 Carya illinoinensis HOM05D003814 ORTHO05D004399 8.5e-48 195.3 366 34.2
TWI53G0525 Tripterygium wilfordii HOM05D003814 ORTHO05D004399 2.5e-47 193.7 378 31.2
Haze_11118 Corylus avellana HOM05D003814 ORTHO05D004399 4.2e-47 193.0 360 33.9
AT5G41720 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 1.2e-46 191.4 169 58.0
Thecc.09G080800 Theobroma cacao HOM05D003814 ORTHO05D004399 7.9e-46 188.7 376 30.3
Haze_08071 Corylus avellana HOM05D003814 ORTHO05D004399 7.4e-44 182.2 300 36.0
Duzib168G0557 Durio zibethinus HOM05D003814 ORTHO05D004399 2.8e-43 180.3 363 31.7
Cc08_g07160 Coffea canephora HOM05D003814 ORTHO05D004399 6.3e-43 179.1 365 32.6
Cfa001318 Carpinus fangiana HOM05D003814 ORTHO05D004399 1.4e-42 177.9 365 35.9
Dinv25578 Davidia involucrata HOM05D003814 ORTHO05D004399 1.5e-41 174.5 366 32.2
Duzib187G0024 Durio zibethinus HOM05D003814 ORTHO05D004399 2.6e-41 173.7 371 29.6
MD15G1214200 Malus domestica HOM05D003814 ORTHO05D004399 3.8e-40 169.9 371 32.3
Potri.007G037500 Populus trichocarpa HOM05D003814 ORTHO05D004399 6.5e-40 169.1 347 32.6
QL05p073999 Quercus lobata HOM05D003814 ORTHO05D004399 1.1e-39 168.3 367 32.7
Potri.008G214000 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.9e-39 167.5 306 34.3
Manes.04G143500 Manihot esculenta HOM05D003814 ORTHO05D004399 3.2e-39 166.8 364 30.2
FAN19G0873 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.2e-38 164.9 369 32.5
Potri.014G187100 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.2e-38 164.9 357 32.5
Potri.017G066400 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.2e-38 164.9 306 34.3
RcHm_v2.0_Chr2g0094241 Rosa chinensis HOM05D003814 ORTHO05D004399 1.2e-38 164.9 326 35.6
FvH4_1g08170 Fragaria vesca HOM05D003814 ORTHO05D004399 2.7e-38 163.7 363 32.2
Nitab4.5_0000073g0260 Nicotiana tabacum HOM05D003814 ORTHO05D004399 4.7e-38 162.9 378 30.4
Prupe.7G202800 Prunus persica HOM05D003814 ORTHO05D004399 1.0e-37 161.8 349 33.0
PGR004G0767 Punica granatum HOM05D003814 ORTHO05D004399 1.0e-37 161.8 354 32.2
TAR636G0432 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.0e-37 161.8 355 29.0
TAR178G0001 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.4e-37 161.4 359 30.4
FAN26G3410 Fragaria x ananassa HOM05D003814 ORTHO05D004399 3.0e-37 160.2 327 33.0
FAN23G2856 Fragaria x ananassa HOM05D003814 ORTHO05D004399 5.1e-37 159.5 312 34.0
TAR624G1373 Trochodendron aralioides HOM05D003814 ORTHO05D004399 6.7e-37 159.1 359 30.9
FAN26G2103 Fragaria x ananassa HOM05D003814 ORTHO05D004399 8.8e-37 158.7 327 32.7
Haze_11116 Corylus avellana HOM05D003054 ORTHO05D003376 1.1e-36 158.3 297 31.6
C09p17160 Brassica napus HOM05D002195 ORTHO05D002898 3.3e-36 156.8 351 33.0
BolC9t54614H Brassica oleracea HOM05D002195 ORTHO05D002898 3.3e-36 156.8 351 33.0
DCAR_028786 Daucus carota HOM05D003814 ORTHO05D004399 4.4e-36 156.4 359 31.5
A09p14250 Brassica napus HOM05D002195 ORTHO05D002898 9.7e-36 155.2 361 31.3
Sabra10G0173600 Salix brachista HOM05D001546 ORTHO05D004399 3.7e-35 153.3 302 34.4
QL03p008482 Quercus lobata HOM05D003814 ORTHO05D004399 1.1e-34 151.8 306 34.0
TAR626G0622 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.1e-34 151.8 328 29.0
TAR374G0716 Trochodendron aralioides HOM05D003814 ORTHO05D004399 2.4e-34 150.6 328 28.7
Peaxi162Scf00928g00024 Petunia axillaris HOM05D003814 ORTHO05D004399 4.1e-34 149.8 376 29.5
COL.COLO4_18129 Corchorus olitorius HOM05D003814 ORTHO05D004399 7.0e-34 149.1 340 33.5
Sabra16G0039400 Salix brachista HOM05D003814 ORTHO05D004399 9.1e-34 148.7 274 35.4
Potri.001G462650 Populus trichocarpa HOM05D003814 ORTHO05D004399 5.9e-33 146.0 262 34.7
Gohir.D04G023700 Gossypium hirsutum HOM05D003814 ORTHO05D004399 7.7e-33 145.6 319 29.5
Hma1.2p1_0169F.1_g074710 Hydrangea macrophylla HOM05D003814 ORTHO05D004399 7.7e-33 145.6 363 30.0
Gohir.D04G029200 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.3e-32 144.8 320 30.0
FAN28G0169 Fragaria x ananassa HOM05D003814 ORTHO05D004399 5.0e-32 142.9 275 34.5
Potri.006G167500 Populus trichocarpa HOM05D003814 ORTHO05D004399 6.5e-32 142.5 300 32.0
FAN26G3081 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.1e-31 141.7 346 31.8
Gorai.012G033100 Gossypium raimondii HOM05D003814 ORTHO05D004399 1.1e-31 141.7 317 29.3
Lsat_1_v5_gn_6_92600 Lactuca sativa HOM05D003814 ORTHO05D004399 1.1e-31 141.7 353 30.9
AT2G05360 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 3.2e-31 140.2 311 31.5
Gohir.D04G024036 Gossypium hirsutum HOM05D003814 ORTHO05D004399 9.4e-31 138.7 320 29.4
Gohir.A05G386550 Gossypium hirsutum HOM05D003814 ORTHO05D004399 3.6e-30 136.7 359 30.4
Thecc.06G118300 Theobroma cacao HOM05D003814 ORTHO05D004399 1.8e-29 134.4 354 28.5
HanXRQChr04g0126191 Helianthus annuus HOM05D003814 ORTHO05D004399 2.3e-29 134.0 273 31.5
Gohir.D07G013832 Gossypium hirsutum HOM05D003814 ORTHO05D004399 6.7e-29 132.5 307 31.6
HanXRQChr04g0107941 Helianthus annuus HOM05D003814 ORTHO05D004399 8.8e-29 132.1 278 34.9
MD02G1086300 Malus domestica HOM05D003814 ORTHO05D004399 8.8e-29 132.1 290 32.4
SHI03045 Sapria himalayana HOM05D003814 ORTHO05D004399 8.8e-29 132.1 319 32.3
SHI03051 Sapria himalayana HOM05D003814 ORTHO05D004399 8.8e-29 132.1 319 32.3
MELO3C009576.2 Cucumis melo HOM05D003814 ORTHO05D004399 2.6e-28 130.6 382 29.6
Gohir.A07G014200 Gossypium hirsutum HOM05D003814 ORTHO05D004399 2.6e-28 130.6 317 30.0
Gorai.003G018500 Gossypium raimondii HOM05D003814 ORTHO05D004399 2.6e-28 130.6 314 29.0
HanXRQChr11g0341161 Helianthus annuus HOM05D003814 ORTHO05D004399 2.6e-28 130.6 358 28.8
Gohir.A02G162300 Gossypium hirsutum HOM05D003814 ORTHO05D004399 3.3e-28 130.2 343 28.6
FAN28G0704 Fragaria x ananassa HOM05D003814 ORTHO05D004399 4.4e-28 129.8 214 39.3
Gohir.A07G014250 Gossypium hirsutum HOM05D003814 ORTHO05D004399 4.4e-28 129.8 317 30.0
Gohir.D03G018133 Gossypium hirsutum HOM05D003814 ORTHO05D004399 4.4e-28 129.8 314 29.0
Sed0024854 Sechium edule HOM05D003814 ORTHO05D004399 5.7e-28 129.4 372 27.7
Lsat_1_v5_gn_8_86340 Lactuca sativa HOM05D003814 ORTHO05D004399 9.7e-28 128.6 299 31.1
TAR624G1176 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.3e-27 128.3 247 30.0
Gorai.001G014600 Gossypium raimondii HOM05D003814 ORTHO05D004399 1.7e-27 127.9 307 30.9
Nitab4.5_0000343g0080 Nicotiana tabacum HOM05D003814 ORTHO05D004399 6.3e-27 125.9 336 26.8
FvH4_1g08161 Fragaria vesca HOM05D003814 ORTHO05D004399 8.2e-27 125.6 258 33.3
PGSC0003DMG400037022 Solanum tuberosum HOM05D003814 ORTHO05D004399 8.2e-27 125.6 228 32.0
PSO832G2394 Papaver somniferum HOM05D003814 ORTHO05D004399 1.4e-26 124.8 316 27.8
PGR004G1882 Punica granatum HOM05D003814 ORTHO05D004399 1.4e-26 124.8 265 34.7
ClCG10G017770 Citrullus lanatus HOM05D003814 ORTHO05D004399 2.4e-26 124.0 361 28.5
Zm00001eb202740 Zea mays HOM05D003814 ORTHO05D004399 7.0e-26 122.5 346 28.6
CAN.G625.43 Capsicum annuum HOM05D003814 ORTHO05D004399 1.2e-25 121.7 385 27.5
Prupe.7G202900 Prunus persica HOM05D003814 ORTHO05D004399 1.2e-25 121.7 278 31.7
FAN23G1165 Fragaria x ananassa HOM05D003814 ORTHO05D004399 2.0e-25 120.9 186 40.3
Aqoxy5G02065 Aquilegia oxysepala HOM05D003814 ORTHO05D004399 2.6e-25 120.6 325 29.2
ClCG10G017950 Citrullus lanatus HOM05D003814 ORTHO05D004399 7.7e-25 119.0 278 30.6
PSO478G3480 Papaver somniferum HOM05D003814 ORTHO05D004399 7.7e-25 119.0 242 35.5
Haze_11119 Corylus avellana HOM05D003814 ORTHO05D004399 1.3e-24 118.2 184 37.5
ECA246G3486 Erigeron canadensis HOM05D003814 ORTHO05D004399 1.3e-24 118.2 281 30.2
PSO017G6459 Papaver somniferum HOM05D003814 ORTHO05D004399 1.3e-24 118.2 291 28.9
PSO832G3562 Papaver somniferum HOM05D003814 ORTHO05D004399 1.3e-24 118.2 314 27.4
HanXRQChr04g0126041 Helianthus annuus HOM05D003814 ORTHO05D004399 2.9e-24 117.1 365 26.0
Lsat_1_v5_gn_1_71940 Lactuca sativa HOM05D003814 ORTHO05D004399 6.5e-24 115.9 361 26.9
PSO782G3287 Papaver somniferum HOM05D003814 ORTHO05D004399 6.5e-24 115.9 347 30.8
PSO170G5919 Papaver somniferum HOM05D003814 ORTHO05D004399 8.5e-24 115.5 304 27.3
PSO170G6690 Papaver somniferum HOM05D003814 ORTHO05D004399 1.1e-23 115.2 299 31.1
PSO478G4598 Papaver somniferum HOM05D003814 ORTHO05D004399 1.9e-23 114.4 291 28.2
PSO210G1123 Papaver somniferum HOM05D003814 ORTHO05D004399 4.2e-23 113.2 314 29.0
PGSC0003DMG400041501 Solanum tuberosum HOM05D003814 ORTHO05D004399 4.2e-23 113.2 371 25.3
SGA_v2.0_scaffold4G02155 Striga asiatica HOM05D003814 ORTHO05D004399 1.2e-22 111.7 364 26.4
CsaV3_3G038340 Cucumis sativus L. HOM05D003814 ORTHO05D004399 1.6e-22 111.3 383 27.7
Peaxi162Scf00047g10141 Petunia axillaris HOM05D003814 ORTHO05D004399 1.6e-22 111.3 296 27.4
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 4.7e-22 109.8 293 29.0
ECA236G4104 Erigeron canadensis HOM05D003814 ORTHO05D004399 8.0e-22 109.0 275 30.5
Migut.E01439 Erythranthe guttata HOM05D003814 ORTHO05D004399 8.0e-22 109.0 400 24.2
FAN26G2210 Fragaria x ananassa HOM05D003814 ORTHO05D004399 2.3e-21 107.5 267 30.7
PGSC0003DMG400046351 Solanum tuberosum HOM05D003814 ORTHO05D004399 1.2e-20 105.1 296 26.4
unitig_22.g5424 Utricularia gibba HOM05D003814 ORTHO05D004399 1.3e-19 101.7 296 28.4
CiPaw.04G145600 Carya illinoinensis HOM05D003814 ORTHO05D004399 2.2e-19 100.9 153 40.5
PGSC0003DMG400035508 Solanum tuberosum HOM05D003814 ORTHO05D004399 2.2e-19 100.9 140 36.4
Haze_27585 Corylus avellana HOM05D003814 ORTHO05D004399 1.1e-18 98.6 191 31.4
HanXRQChr04g0110661 Helianthus annuus HOM05D003814 ORTHO05D004399 2.4e-18 97.4 242 29.8
TAR636G1188 Trochodendron aralioides HOM05D003814 ORTHO05D004399 4.1e-18 96.7 249 26.9
ECA236G4439 Erigeron canadensis HOM05D003814 ORTHO05D004399 9.1e-18 95.5 234 29.1
Peaxi162Scf00067g00233 Petunia axillaris HOM05D003814 ORTHO05D004399 5.9e-17 92.8 237 29.1
PSO782G0050 Papaver somniferum HOM05D003814 ORTHO05D004399 7.7e-17 92.4 208 34.6
MD15G1214100 Malus domestica HOM05D003814 ORTHO05D004399 1.5e-15 88.2 178 33.7
FAN19G3124 Fragaria x ananassa HOM05D003814 ORTHO05D004399 5.5e-15 86.3 218 30.3
Peaxi162Scf00928g00006 Petunia axillaris HOM05D003814 ORTHO05D004399 5.5e-15 86.3 189 31.2
ATR0693G387 Amborella trichopoda HOM05D007162 ORTHO05D007631 7.2e-15 85.9 290 24.1
Migut.E01447 Erythranthe guttata HOM05D003814 ORTHO05D004399 9.4e-15 85.5 230 27.4
Lsat_1_v5_gn_8_99821 Lactuca sativa HOM05D002339 ORTHO05D004399 1.2e-14 85.1 260 25.8
PSO801G0304 Papaver somniferum HOM05D003814 ORTHO05D004399 3.0e-13 80.5 180 30.6
Lsat_1_v5_gn_8_83741 Lactuca sativa HOM05D003814 ORTHO05D004399 4.4e-12 76.6 260 26.2
Gorai.003G018600 Gossypium raimondii HOM05D003814 ORTHO05D004399 1.3e-11 75.1 314 25.8
SalBow1G2869 Salvia bowleyana HOM05D001856 ORTHO05D001959 2.2e-11 74.3 170 32.9
ATR0580G250 Amborella trichopoda HOM05D007162 ORTHO05D007631 8.3e-11 72.4 292 24.0
TAR636G1700 Trochodendron aralioides HOM05D003814 ORTHO05D004399 8.3e-11 72.4 148 29.7
Migut.G00030 Erythranthe guttata HOM05D007162 ORTHO05D007631 1.1e-10 72.0 264 23.1
Migut.G00033 Erythranthe guttata HOM05D007162 ORTHO05D007631 1.1e-10 72.0 264 23.1
Rhsim04G0064500 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.4e-10 71.6 308 25.6
Rhsim08G0168000 Rhododendron simsii HOM05D000664 ORTHO05D000491 7.0e-10 69.3 257 23.7
Lsat_1_v5_gn_7_15380 Lactuca sativa HOM05D003814 ORTHO05D004399 9.1e-10 68.9 167 28.7
Lsat_1_v5_gn_5_64781 Lactuca sativa HOM05D003814 ORTHO05D004399 1.2e-09 68.6 143 28.0
Lsat_1_v5_gn_2_42360 Lactuca sativa HOM05D003814 ORTHO05D004399 1.6e-09 68.2 174 27.0
TAR624G0077 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.0e-08 65.5 188 22.9
Cc06_g09830 Coffea canephora HOM05D000007 ORTHO05D000017 1.3e-08 65.1 358 21.5
Rhsim01G0016900 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.3e-08 64.3 178 25.3
Rhsim01G0013400 Rhododendron simsii HOM05D000664 ORTHO05D000491 6.6e-08 62.8 240 26.7
Rhsim01G0013600 Rhododendron simsii HOM05D000664 ORTHO05D000491 8.6e-08 62.4 244 25.0
Gohir.D03G018166 Gossypium hirsutum HOM05D003814 ORTHO05D004399 4.2e-07 60.1 254 26.8
Rhsim01G0018000 Rhododendron simsii HOM05D000664 ORTHO05D000491 4.2e-07 60.1 149 26.2
Rhsim01G0013700 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.6e-06 58.2 238 23.1
Rhsim07G0025700 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.8e-06 57.4 238 23.5
RcHm_v2.0_Chr1g0317281 Rosa chinensis HOM05D000007 ORTHO05D000039 2.8e-06 57.4 277 21.7


User provided reference genes

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