Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 1.6e-126 456.1 229 100.0
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 2.8e-126 455.3 229 99.6
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 2.8e-126 455.3 229 99.6
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 2.8e-126 455.3 229 99.6
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 2.8e-126 455.3 229 99.6
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 3.6e-126 454.9 229 99.6
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 6.9e-125 450.7 229 97.8
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 5.8e-124 447.6 238 95.8
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 7.6e-124 447.2 229 97.4
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 3.8e-123 444.9 229 95.6
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 4.9e-123 444.5 229 95.2
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 6.4e-123 444.1 229 95.6
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 8.4e-123 443.7 229 95.6
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 8.4e-123 443.7 229 96.5
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 2.4e-122 442.2 229 95.2
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 7.1e-122 440.7 256 89.1
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 1.6e-121 439.5 229 94.8
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 2.6e-116 422.2 229 90.8
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 2.6e-116 422.2 229 90.8
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 5.8e-116 421.0 227 91.2
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 2.2e-115 419.1 227 89.4
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 2.9e-115 418.7 227 89.9
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 3.8e-115 418.3 229 90.4
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 4.9e-115 417.9 227 89.0
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 4.9e-115 417.9 229 90.0
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 6.4e-115 417.5 227 90.3
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 6.4e-115 417.5 229 90.0
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 8.4e-115 417.2 229 89.5
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 1.1e-114 416.8 227 89.4
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 1.9e-114 416.0 229 89.5
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 2.4e-114 415.6 227 88.1
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 2.4e-114 415.6 227 89.9
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 3.2e-114 415.2 227 89.4
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 3.2e-114 415.2 227 90.3
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 3.2e-114 415.2 227 89.9
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 4.2e-114 414.8 227 89.0
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 4.2e-114 414.8 229 89.5
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 4.2e-114 414.8 227 89.9
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 5.4e-114 414.5 229 89.5
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 5.4e-114 414.5 229 89.5
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 7.1e-114 414.1 226 90.3
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 7.1e-114 414.1 226 90.3
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 7.1e-114 414.1 229 88.6
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 9.3e-114 413.7 227 89.9
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 1.2e-113 413.3 227 89.0
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 1.6e-113 412.9 227 89.4
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 1.6e-113 412.9 227 89.9
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 2.1e-113 412.5 227 89.0
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 2.1e-113 412.5 227 89.4
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 2.1e-113 412.5 227 89.0
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 2.7e-113 412.1 227 89.0
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.7e-113 412.1 226 89.8
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 2.7e-113 412.1 227 89.9
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 2.7e-113 412.1 227 89.0
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 3.5e-113 411.8 227 89.9
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 3.5e-113 411.8 227 89.0
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 3.5e-113 411.8 227 89.0
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 4.6e-113 411.4 227 89.0
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 4.6e-113 411.4 227 88.5
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 4.6e-113 411.4 227 89.0
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 6.0e-113 411.0 229 88.2
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 7.9e-113 410.6 227 88.5
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.0e-112 410.2 227 89.4
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 1.3e-112 409.8 227 88.1
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.8e-112 409.5 227 88.5
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.8e-112 409.5 229 87.8
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 2.3e-112 409.1 229 87.3
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 3.0e-112 408.7 227 87.7
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 3.0e-112 408.7 227 88.1
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 6.7e-112 407.5 227 87.7
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 6.7e-112 407.5 227 87.2
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 8.7e-112 407.1 229 86.5
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 1.1e-111 406.8 227 86.8
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 1.5e-111 406.4 227 86.8
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 1.5e-111 406.4 227 86.8
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.9e-111 406.0 227 87.2
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 3.3e-111 405.2 227 87.2
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 7.4e-111 404.1 229 86.5
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 7.4e-111 404.1 229 86.0
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.4e-109 399.1 227 84.6
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 2.4e-109 399.1 229 86.0
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 4.0e-109 398.3 227 85.5
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 5.3e-109 397.9 229 85.6
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 1.5e-108 396.4 227 85.9
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 2.6e-108 395.6 227 85.5
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 4.5e-108 394.8 227 82.8
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 5.8e-108 394.4 220 87.7
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 2.2e-107 392.5 227 84.1
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.9e-106 389.4 227 85.9
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 3.2e-106 388.7 229 86.0
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 5.5e-106 387.9 229 81.7
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 1.2e-105 386.7 227 85.9
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 1.6e-105 386.3 229 81.2
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 2.1e-105 386.0 227 84.1
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 2.7e-105 385.6 226 81.9
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 4.6e-105 384.8 226 82.3
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 3.0e-104 382.1 227 81.1
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 1.6e-102 376.3 227 79.7
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 8.4e-99 364.0 201 87.6
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 1.9e-98 362.8 227 76.7
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 2.5e-98 362.5 203 88.7
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 2.5e-98 362.5 202 88.1
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 1.2e-97 360.1 204 87.3
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 1.6e-97 359.8 227 76.2
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 7.9e-97 357.5 227 79.3
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 1.9e-95 352.8 210 80.5
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 9.7e-95 350.5 227 72.7
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 2.2e-94 349.4 190 91.1
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 2.8e-94 349.0 200 85.5
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 4.8e-94 348.2 191 89.5
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 1.4e-93 346.7 190 88.9
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.4e-93 346.7 191 88.5
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.4e-93 346.7 254 72.0
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.8e-93 346.3 226 73.5
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.8e-93 346.3 226 73.5
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 2.6e-92 342.4 197 86.3
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 3.4e-92 342.0 187 89.8
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 3.8e-91 338.6 185 90.3
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 1.1e-90 337.0 231 75.8
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 6.1e-89 331.3 226 69.0
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 8.8e-88 327.4 227 74.0
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 2.5e-87 325.9 185 85.9
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 6.5e-83 311.2 162 95.1
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 1.4e-82 310.1 226 69.9
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 4.8e-78 295.0 164 87.8
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.8e-77 293.1 162 87.0
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 2.0e-76 289.7 160 88.1
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 1.0e-75 287.3 357 49.0
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 5.3e-61 238.4 131 87.8
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 2.6e-55 219.5 190 59.5
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.2e-54 216.5 120 86.7
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 8.9e-40 167.9 140 64.3
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.3e-30 137.5 69 100.0
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 5.8e-23 112.1 62 77.4
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 1.6e-17 94.0 152 40.8
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 8.1e-17 91.7 124 47.6
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.0e-15 87.0 45 88.9
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 9.9e-15 84.7 81 53.1
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.1e-13 81.3 52 67.3
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 4.6e-12 75.9 64 57.8
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 8.1e-09 65.1 51 64.7
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 6.9e-08 62.0 82 47.6
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 1.3e-06 57.8 26 96.2


User provided reference genes

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