Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.8e-128 462.6 239 100.0
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.8e-128 462.6 239 100.0
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 2.5e-117 425.6 239 92.1
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 2.9e-110 402.1 239 87.4
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 2.5e-109 399.1 239 86.2
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 7.2e-109 397.5 240 86.7
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 7.2e-109 397.5 240 86.7
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.2e-108 396.7 240 87.1
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 2.1e-108 396.0 241 85.9
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 3.6e-108 395.2 241 85.5
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 3.6e-108 395.2 240 86.7
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 4.7e-108 394.8 240 85.8
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 7.9e-108 394.0 241 85.5
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 7.9e-108 394.0 241 85.5
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 4.8e-105 384.8 240 85.4
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 5.7e-98 361.3 221 85.5
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.9e-94 349.0 258 72.9
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 5.7e-90 334.7 240 74.6
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.4e-88 329.3 240 74.6
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 5.4e-88 328.2 178 92.1
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 5.5e-85 318.2 185 86.5
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 2.1e-84 316.2 185 86.5
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 4.7e-76 288.5 244 63.5
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 8.9e-75 284.3 234 61.5
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 1.5e-74 283.5 244 63.5
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.6e-74 282.7 243 62.6
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 2.6e-74 282.7 244 60.2
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 4.4e-74 282.0 243 63.0
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 9.8e-74 280.8 232 63.8
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.9e-73 279.3 243 62.1
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.9e-73 279.3 239 62.8
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.9e-73 279.3 247 60.3
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 4.9e-73 278.5 247 61.1
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 6.4e-73 278.1 248 58.9
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.1e-72 277.3 244 62.3
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.8e-72 276.6 237 62.4
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.8e-72 276.6 237 62.4
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 2.4e-72 276.2 244 59.8
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 4.1e-72 275.4 237 62.0
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.6e-71 273.5 242 59.9
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.6e-71 273.5 201 67.2
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 2.0e-71 273.1 243 61.3
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 2.0e-71 273.1 227 63.9
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 3.5e-71 272.3 225 63.6
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 4.6e-71 271.9 192 70.8
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 4.6e-71 271.9 242 61.6
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 7.8e-71 271.2 239 60.7
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 7.8e-71 271.2 242 62.0
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.0e-70 269.2 251 59.0
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 3.0e-70 269.2 238 61.8
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 8.6e-70 267.7 248 59.7
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 8.6e-70 267.7 242 61.2
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 1.9e-69 266.5 241 58.5
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.9e-69 266.5 201 66.2
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.9e-69 266.5 238 61.3
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 3.3e-69 265.8 247 58.3
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 5.6e-69 265.0 241 59.3
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 9.5e-69 264.2 243 58.4
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 9.5e-69 264.2 243 58.4
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 1.6e-68 263.5 236 58.1
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 2.1e-68 263.1 196 66.8
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.8e-68 262.7 246 58.5
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 2.8e-68 262.7 179 70.4
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 6.2e-68 261.5 221 62.0
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 6.2e-68 261.5 238 60.9
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.1e-67 260.8 238 59.2
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 1.8e-67 260.0 240 56.7
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.8e-67 260.0 239 56.9
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 2.3e-67 259.6 243 58.4
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 2.3e-67 259.6 243 58.4
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 3.1e-67 259.2 239 60.3
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 6.8e-67 258.1 181 70.2
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 8.9e-67 257.7 241 59.3
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 8.9e-67 257.7 185 66.5
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 8.9e-67 257.7 237 58.6
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 1.2e-66 257.3 238 57.6
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 1.2e-66 257.3 226 58.0
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.5e-66 256.9 178 70.8
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.5e-66 256.9 181 69.6
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 2.0e-66 256.5 249 55.8
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 2.0e-66 256.5 239 57.3
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 3.4e-66 255.8 185 65.9
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 3.4e-66 255.8 178 69.7
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 3.4e-66 255.8 241 58.5
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 4.4e-66 255.4 242 59.1
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 4.4e-66 255.4 241 57.7
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 9.8e-66 254.2 243 59.3
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.3e-65 253.8 247 56.7
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 2.2e-65 253.1 203 62.1
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 2.2e-65 253.1 198 60.6
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 6.4e-65 251.5 241 56.8
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 6.4e-65 251.5 176 68.8
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 1.4e-64 250.4 251 57.0
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.9e-64 250.0 239 55.2
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 3.2e-64 249.2 226 56.2
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 4.1e-64 248.8 151 78.8
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 5.4e-64 248.4 194 63.9
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 7.0e-64 248.1 244 57.4
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 9.2e-64 247.7 244 55.7
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.6e-63 246.9 248 52.8
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 2.0e-63 246.5 250 56.0
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.0e-63 246.5 240 55.4
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 2.7e-63 246.1 245 57.1
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 2.7e-63 246.1 253 55.7
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 3.5e-63 245.7 240 54.6
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.0e-62 244.2 244 56.6
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 1.0e-62 244.2 241 56.8
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.3e-62 243.8 241 56.0
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 1.3e-62 243.8 215 60.0
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 3.9e-62 242.3 178 66.3
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 2.5e-61 239.6 163 71.2
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 9.5e-61 237.7 178 66.3
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 1.2e-60 237.3 251 51.8
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 1.6e-60 236.9 239 52.7
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 2.8e-60 236.1 175 65.1
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 4.7e-60 235.3 239 53.1
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 6.2e-60 235.0 163 75.5
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.1e-59 234.2 238 52.5
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 2.3e-59 233.0 230 55.7
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 5.2e-59 231.9 228 57.9
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 5.2e-59 231.9 250 52.0
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 6.8e-59 231.5 180 62.8
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 2.6e-58 229.6 231 55.0
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 3.4e-58 229.2 246 51.6
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 3.4e-58 229.2 250 51.2
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.1e-56 224.2 246 51.6
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.1e-56 224.2 173 61.3
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.4e-56 223.0 147 73.5
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.1e-56 222.2 163 65.6
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.6e-55 220.3 205 53.7
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.7e-55 219.5 220 54.5
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 2.7e-55 219.5 174 60.9
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 6.0e-55 218.4 174 60.9
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 7.8e-55 218.0 230 51.7
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.3e-54 217.2 208 53.8
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.2e-52 210.7 224 55.4
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 2.1e-52 209.9 241 48.5
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 1.8e-51 206.8 173 58.4
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 4.4e-50 202.2 175 57.1
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.4e-49 198.4 162 62.3
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.5e-45 186.4 132 65.9
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.9e-41 172.2 147 62.6
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 3.2e-40 169.5 112 71.4
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 3.0e-38 162.9 172 45.9
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 9.0e-35 151.4 173 43.9
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 1.7e-33 147.1 150 52.7
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 2.2e-33 146.7 106 64.2
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 1.3e-30 137.5 175 41.7
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 2.5e-29 133.3 167 43.1
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 5.6e-29 132.1 190 38.9
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.1e-24 115.2 76 71.1
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 4.5e-18 95.9 154 35.1
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 2.9e-17 93.2 86 54.7
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 5.7e-13 79.0 71 57.7
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 5.7e-13 79.0 71 57.7
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 5.7e-13 79.0 74 47.3
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 1.6e-12 77.4 58 67.2
Aa31sc213G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 6.9e-11 72.0 55 76.4
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 3.4e-10 69.7 106 38.7


User provided reference genes

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