Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 1.3e-41 172.6 80 100.0
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 2.9e-38 161.4 80 93.8
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 6.5e-38 160.2 80 92.5
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 6.5e-38 160.2 80 92.5
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 6.5e-38 160.2 80 92.5
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 6.5e-38 160.2 80 92.5
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 3.2e-37 157.9 80 91.2
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 5.7e-34 147.1 81 86.4
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 1.6e-33 145.6 81 85.2
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 1.6e-33 145.6 81 85.2
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 1.3e-30 136.0 81 77.8
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 6.5e-30 133.7 82 76.8
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 1.1e-29 132.9 81 75.3
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 5.1e-27 124.0 81 69.1
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 2.5e-26 121.7 81 70.4
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 9.7e-26 119.8 81 66.7
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 1.3e-25 119.4 81 69.1
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 1.7e-25 119.0 81 67.9
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 1.7e-25 119.0 81 69.1
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 2.2e-25 118.6 81 67.9
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 2.2e-25 118.6 81 67.9
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 2.2e-25 118.6 81 66.7
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 2.2e-25 118.6 80 65.0
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 2.2e-25 118.6 80 65.0
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 2.2e-25 118.6 81 66.7
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 2.8e-25 118.2 81 67.9
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 2.8e-25 118.2 80 67.5
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 3.7e-25 117.9 81 67.9
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 4.8e-25 117.5 80 67.5
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 4.8e-25 117.5 80 67.5
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 4.8e-25 117.5 80 67.5
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 4.8e-25 117.5 80 67.5
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 6.3e-25 117.1 81 65.4
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 8.2e-25 116.7 81 66.7
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 8.2e-25 116.7 81 66.7
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 8.2e-25 116.7 81 66.7
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 8.2e-25 116.7 80 66.2
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 8.2e-25 116.7 80 66.2
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 8.2e-25 116.7 81 64.2
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 1.1e-24 116.3 81 66.7
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 1.8e-24 115.5 81 66.7
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 2.4e-24 115.2 81 66.7
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 2.4e-24 115.2 81 66.7
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 2.4e-24 115.2 81 66.7
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 3.1e-24 114.8 81 66.7
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 3.1e-24 114.8 81 64.2
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 3.1e-24 114.8 80 66.2
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 3.1e-24 114.8 81 65.4
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 3.1e-24 114.8 80 65.0
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 3.1e-24 114.8 81 65.4
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 5.3e-24 114.0 81 65.4
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 6.9e-24 113.6 81 64.2
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 6.9e-24 113.6 81 63.0
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 9.1e-24 113.2 81 64.2
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 1.2e-23 112.8 81 67.9
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 1.2e-23 112.8 81 64.2
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 1.5e-23 112.5 81 63.0
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 2.6e-23 111.7 81 63.0
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 3.4e-23 111.3 53 94.3
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 3.4e-23 111.3 81 64.2
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 3.4e-23 111.3 81 63.0
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 3.4e-23 111.3 81 64.2
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 4.5e-23 110.9 81 64.2
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 7.7e-23 110.2 79 64.6
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 7.7e-23 110.2 80 60.0
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 7.7e-23 110.2 81 59.3
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 7.7e-23 110.2 81 59.3
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 1.0e-22 109.8 81 63.0
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 1.3e-22 109.4 81 65.4
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 1.3e-22 109.4 81 63.0
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 2.2e-22 108.6 80 63.8
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 2.9e-22 108.2 81 63.0
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 3.8e-22 107.8 81 64.2
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 5.0e-22 107.5 82 63.4
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 6.5e-22 107.1 82 62.2
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 8.5e-22 106.7 81 61.7
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 8.5e-22 106.7 81 61.7
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 7.2e-21 103.6 81 63.0
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 1.2e-20 102.8 81 58.0
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 1.2e-20 102.8 81 56.8
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 1.2e-20 102.8 81 60.5
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 2.1e-20 102.1 81 60.5
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 2.1e-20 102.1 81 60.5
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 2.1e-20 102.1 79 62.0
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 3.6e-20 101.3 79 63.3
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 6.1e-20 100.5 81 56.8
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 6.1e-20 100.5 81 56.8
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 7.9e-20 100.1 81 59.3
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 2.3e-19 98.6 81 58.0
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 3.0e-19 98.2 81 56.8
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 1.1e-18 96.3 81 56.8
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 2.0e-18 95.5 79 57.0
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 1.3e-17 92.8 78 50.0
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 1.1e-16 89.7 76 53.9
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 5.9e-15 84.0 57 63.2
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 1.0e-14 83.2 81 50.6
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 1.3e-14 82.8 72 51.4
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 3.8e-14 81.3 57 61.4
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 3.8e-14 81.3 57 61.4
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 1.1e-13 79.7 59 66.1
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 3.2e-13 78.2 77 49.4
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 5.5e-13 77.4 59 64.4
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 9.4e-13 76.6 79 44.3
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 1.2e-12 76.3 59 57.6
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 1.4e-11 72.8 79 44.3
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 6.7e-11 70.5 76 44.7
COL.COLO4_18491 Corchorus olitorius HOM05D007025 ORTHO05D008862 1.4e-08 62.8 77 44.2
MD02G1271100 Malus domestica HOM05D007025 ORTHO05D008862 3.1e-08 61.6 45 57.8
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 2.0e-07 58.9 48 58.3
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 2.0e-07 58.9 48 58.3
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 2.9e-06 55.1 41 56.1
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 3.8e-06 54.7 40 62.5


User provided reference genes

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