Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 0.0e+00 1353.2 650 100.0
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 0.0e+00 1289.6 654 94.5
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 0.0e+00 1286.2 647 95.1
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 0.0e+00 1281.9 650 94.5
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 0.0e+00 1276.2 650 94.2
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 0.0e+00 1269.6 650 94.0
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 0.0e+00 1269.6 650 94.0
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 0.0e+00 1269.6 650 94.0
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 0.0e+00 1241.1 647 92.0
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 0.0e+00 1234.2 638 92.8
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 0.0e+00 1204.5 646 88.4
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 0.0e+00 1094.0 560 93.0
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 2.8e-309 1064.7 650 76.6
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 3.7e-309 1064.3 650 76.3
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 1.4e-308 1062.4 640 77.8
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 3.1e-308 1061.2 636 76.9
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 7.0e-308 1060.1 648 76.1
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 4.5e-307 1057.4 636 76.7
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 6.6e-306 1053.5 652 75.8
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 1.1e-305 1052.7 646 75.2
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 1.9e-305 1052.0 642 74.6
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 1.2e-304 1049.3 649 76.1
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 1.2e-304 1049.3 648 74.1
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 3.6e-304 1047.7 646 74.9
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 4.7e-304 1047.3 642 74.8
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 1.0e-303 1046.2 647 74.2
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 1.0e-303 1046.2 648 75.2
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 1.4e-303 1045.8 648 75.0
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 3.0e-303 1044.6 647 74.2
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 5.2e-303 1043.9 649 75.7
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 3.4e-302 1041.2 689 71.8
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 4.4e-302 1040.8 644 76.2
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 5.7e-302 1040.4 649 73.3
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 7.5e-302 1040.0 649 74.7
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 3.7e-301 1037.7 648 74.4
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 1.2e-299 1032.7 649 74.6
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 4.6e-299 1030.8 649 73.0
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 4.6e-299 1030.8 650 73.5
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 1.7e-298 1028.9 653 73.5
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 3.0e-298 1028.1 649 72.7
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 1.9e-297 1025.4 643 73.7
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 9.5e-297 1023.1 648 72.8
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 1.2e-296 1022.7 649 73.2
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 1.2e-296 1022.7 649 73.5
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 4.7e-296 1020.8 654 73.4
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 1.1e-295 1019.6 650 72.5
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 1.8e-295 1018.8 649 72.4
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 1.8e-295 1018.8 647 73.1
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 4.0e-295 1017.7 633 76.1
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 4.0e-295 1017.7 639 74.0
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 1.2e-294 1016.1 649 73.0
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 1.5e-294 1015.8 638 73.8
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 1.5e-294 1015.8 636 73.7
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 3.4e-294 1014.6 643 73.6
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 4.4e-294 1014.2 644 72.5
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 4.4e-294 1014.2 640 75.3
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 1.7e-293 1012.3 650 71.5
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 8.3e-293 1010.0 649 72.1
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 1.1e-292 1009.6 637 74.4
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 1.4e-292 1009.2 669 70.7
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 3.5e-291 1004.6 644 71.9
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 7.8e-291 1003.4 653 71.7
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 2.3e-290 1001.9 722 67.2
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 8.6e-290 1000.0 649 70.6
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 1.5e-289 999.2 641 71.3
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 2.5e-289 998.4 651 72.2
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 5.6e-289 997.3 659 71.9
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 5.6e-289 997.3 656 70.7
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 9.5e-289 996.5 679 69.1
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 1.2e-288 996.1 649 70.0
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 2.8e-288 995.0 648 72.4
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 8.1e-288 993.4 641 71.8
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 2.6e-286 988.4 649 70.1
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 1.7e-285 985.7 649 71.3
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 6.4e-285 983.8 592 75.3
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 1.1e-284 983.0 644 71.4
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 3.2e-284 981.5 654 70.0
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 2.8e-280 968.4 650 69.1
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 2.4e-279 965.3 805 59.4
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 3.1e-279 964.9 614 72.6
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 2.6e-278 961.8 635 69.0
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 1.3e-277 959.5 597 75.7
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 1.2e-275 953.0 635 69.6
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 2.1e-275 952.2 614 72.6
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 3.3e-273 944.9 790 59.5
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 9.9e-270 933.3 636 67.8
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 1.1e-265 919.8 597 71.7
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 5.6e-265 917.5 650 68.2
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 5.6e-265 917.5 635 68.0
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 1.5e-254 882.9 592 67.4
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 3.0e-250 868.6 643 66.7
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 4.2e-244 848.2 557 70.9
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 1.7e-237 826.2 575 66.3
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 1.3e-232 810.1 637 58.2
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 2.2e-232 809.3 647 59.5
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 4.8e-224 781.6 638 58.0
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 1.0e-218 763.8 366 96.2
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 7.3e-188 661.4 514 62.6
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 6.0e-158 562.0 370 74.6
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 6.6e-149 531.9 553 49.7
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 2.1e-147 526.9 377 67.9
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 1.1e-143 514.6 391 61.6
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 2.1e-139 500.4 540 47.6
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 1.8e-122 444.1 240 81.7
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 4.5e-81 306.6 741 31.4
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 2.6e-76 290.8 154 80.5
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 1.2e-60 238.8 245 53.1
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 1.2e-49 202.2 200 52.5
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 4.9e-27 127.1 90 68.9
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 1.4e-26 125.6 71 80.3
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 8.1e-22 109.8 65 73.8
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.5e-20 105.5 80 61.2
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 5.8e-20 103.6 71 62.0
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 1.1e-18 99.4 66 72.7
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 1.1e-18 99.4 66 72.7
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 1.1e-18 99.4 66 72.7
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 2.5e-18 98.2 94 58.5
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 3.2e-18 97.8 70 61.4
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 5.5e-18 97.1 69 60.9
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 6.7e-16 90.1 82 58.5
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 1.1e-13 82.8 99 50.5
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 1.1e-13 82.8 80 47.5
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.7e-11 75.5 52 61.5
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 2.8e-06 58.2 67 38.8
AL8G19990 Arabidopsis lyrata HOM05D002352 ORTHO05D079747 3.7e-06 57.8 60 51.7


User provided reference genes

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