Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g33790 Schrenkiella parvula HOM05D007224 ORTHO05D009169 5.9e-141 504.2 258 100.0
Thhalv10011734m.g Eutrema salsugineum HOM05D007224 ORTHO05D009169 4.4e-128 461.5 258 91.9
A10p07160 Brassica napus HOM05D007224 ORTHO05D009169 1.8e-126 456.1 258 90.7
BcaC08g42889 Brassica carinata HOM05D007224 ORTHO05D009169 1.6e-125 453.0 258 90.3
BolC6t35243H Brassica oleracea HOM05D007224 ORTHO05D009169 8.8e-121 437.2 276 83.7
C06p01100 Brassica napus HOM05D007224 ORTHO05D009169 4.4e-120 434.9 249 89.6
BraA10t42965Z Brassica rapa HOM05D007224 ORTHO05D009169 8.3e-119 430.6 274 82.8
BcaB07g33899 Brassica carinata HOM05D007224 ORTHO05D009169 2.0e-117 426.0 259 85.7
AT1G44920 Arabidopsis thaliana HOM05D007224 ORTHO05D009169 2.4e-110 402.5 261 83.9
AL1G52590 Arabidopsis lyrata HOM05D007224 ORTHO05D009169 3.5e-109 398.7 263 83.3
Carub.0001s3542 Capsella rubella HOM05D007224 ORTHO05D009169 1.2e-106 390.2 262 81.7
CARHR036150 Cardamine hirsuta HOM05D007224 ORTHO05D009169 4.1e-102 375.2 259 77.6
THA.LOC104799830 Tarenaya hassleriana HOM05D007224 ORTHO05D009169 5.4e-94 348.2 277 71.1
Aa31LG7G10090 Aethionema arabicum HOM05D007224 ORTHO05D009169 3.3e-91 339.0 288 65.3
Ciclev10002194m.g Citrus clementina HOM05D007224 ORTHO05D009169 1.1e-81 307.4 218 71.6
TWI12G0175 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 1.4e-81 307.0 218 70.6
Gohir.D06G023300 Gossypium hirsutum HOM05D007224 ORTHO05D009169 4.4e-80 302.0 268 56.0
Gorai.010G028000 Gossypium raimondii HOM05D007224 ORTHO05D009169 5.8e-80 301.6 266 56.4
Atru.chr13.874 Acer truncatum HOM05D007224 ORTHO05D009169 2.2e-79 299.7 245 62.0
TWI56G1112 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 1.1e-78 297.4 220 69.1
Duzib116G0584 Durio zibethinus HOM05D007224 ORTHO05D009169 1.9e-78 296.6 262 59.5
CsaV3_2G025920 Cucumis sativus L. HOM05D007224 ORTHO05D009169 3.2e-78 295.8 263 57.8
MELO3C010785.2 Cucumis melo HOM05D007224 ORTHO05D009169 1.2e-77 293.9 263 57.4
PSO541G3785 Papaver somniferum HOM05D007224 ORTHO05D009169 1.6e-77 293.5 259 59.5
Gohir.A06G026200 Gossypium hirsutum HOM05D007224 ORTHO05D009169 2.1e-77 293.1 265 56.2
PSO675G4824 Papaver somniferum HOM05D007224 ORTHO05D009169 7.8e-77 291.2 184 76.1
GSVIVG01009296001 Vitis vinifera HOM05D007224 ORTHO05D009169 1.3e-76 290.4 223 67.3
MD15G1064800 Malus domestica HOM05D007224 ORTHO05D009169 6.6e-76 288.1 275 57.1
MD08G1077300 Malus domestica HOM05D007224 ORTHO05D009169 3.3e-75 285.8 272 58.5
RcHm_v2.0_Chr6g0310081 Rosa chinensis HOM05D007224 ORTHO05D009169 1.6e-74 283.5 275 56.4
Hund05274 Selenicereus undatus HOM05D007224 ORTHO05D009169 6.2e-74 281.6 223 65.0
vmacro21415 Vaccinium macrocarpon HOM05D007224 ORTHO05D009169 5.3e-73 278.5 262 60.7
Actinidia10224 Actinidia chinensis HOM05D007224 ORTHO05D009169 9.0e-73 277.7 189 73.0
Ca_06981_v3 Cicer arietinum L. HOM05D007224 ORTHO05D009169 9.0e-73 277.7 212 63.7
Sc26g0004240 Simmondsia chinensis HOM05D007224 ORTHO05D009169 1.5e-72 276.9 221 63.8
FvH4_2g32650 Fragaria vesca HOM05D007224 ORTHO05D009169 2.0e-72 276.6 179 74.3
Lj5g0004917 Lotus japonicus HOM05D007224 ORTHO05D009169 2.0e-72 276.6 255 57.6
TPR.G13169 Trifolium pratense HOM05D007224 ORTHO05D009169 2.0e-72 276.6 223 60.5
ClCG08G016710 Citrullus lanatus HOM05D007224 ORTHO05D009169 3.4e-72 275.8 253 55.7
CiPaw.07G171700 Carya illinoinensis HOM05D007224 ORTHO05D009169 7.6e-72 274.6 267 58.1
Lj4A752T19 Lonicera japonica HOM05D007224 ORTHO05D009169 9.9e-72 274.2 261 57.1
Psat6g017040 Pisum sativum HOM05D007224 ORTHO05D009169 1.1e-70 270.8 198 66.2
Thecc.08G084200 Theobroma cacao HOM05D007224 ORTHO05D009169 1.1e-70 270.8 271 56.1
Cfa013733 Carpinus fangiana HOM05D007224 ORTHO05D009169 4.2e-70 268.9 260 57.7
Nn5g30669 Nelumbo nucifera HOM05D007224 ORTHO05D009169 7.1e-70 268.1 225 60.0
Nitab4.5_0001494g0030 Nicotiana tabacum HOM05D007224 ORTHO05D009169 2.1e-69 266.5 198 67.2
DCAR_009866 Daucus carota HOM05D007224 ORTHO05D009169 6.0e-69 265.0 252 55.6
Solyc04g077500.4 Solanum lycopersicum HOM05D007224 ORTHO05D009169 6.0e-69 265.0 210 64.3
Sopen04g031100 Solanum pennellii HOM05D007224 ORTHO05D009169 7.9e-69 264.6 210 64.3
PGR083G2708 Punica granatum HOM05D007224 ORTHO05D009169 2.3e-68 263.1 179 70.4
Ah.11g039150 Amaranthus hybridus HOM05D007224 ORTHO05D009169 3.0e-68 262.7 218 61.5
CSS0049759 Camellia sinensis var. sinensis HOM05D007224 ORTHO05D009169 5.1e-68 261.9 213 65.3
CANSAT56G0920 Cannabis sativa HOM05D007224 ORTHO05D009169 6.6e-68 261.5 220 59.5
CDE04G2175 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 8.7e-68 261.2 217 57.1
HanXRQChr04g0110471 Helianthus annuus HOM05D007224 ORTHO05D009169 8.7e-68 261.2 260 54.6
Potri.002G114900 Populus trichocarpa HOM05D007224 ORTHO05D009169 8.7e-68 261.2 264 54.5
Rhsim06G0064800 Rhododendron simsii HOM05D007224 ORTHO05D009169 1.1e-67 260.8 171 74.9
FAN27G0962 Fragaria x ananassa HOM05D007224 ORTHO05D009169 1.5e-67 260.4 261 53.3
Prupe.1G418700 Prunus persica HOM05D007224 ORTHO05D009169 1.5e-67 260.4 230 58.3
PGSC0003DMG400004920 Solanum tuberosum HOM05D007224 ORTHO05D009169 1.9e-67 260.0 190 66.8
MSTRG.22207 Avicennia marina HOM05D007224 ORTHO05D009169 2.5e-67 259.6 226 58.8
FAN24G0100 Fragaria x ananassa HOM05D007224 ORTHO05D009169 3.3e-67 259.2 177 70.1
FAN20G0095 Fragaria x ananassa HOM05D007224 ORTHO05D009169 4.3e-67 258.8 269 52.4
Manes.18G049850 Manihot esculenta HOM05D007224 ORTHO05D009169 4.3e-67 258.8 186 69.4
EL10Ac1g02348 Beta vulgaris HOM05D007224 ORTHO05D009169 5.6e-67 258.5 220 60.9
CAN.G1239.16 Capsicum annuum HOM05D007224 ORTHO05D009169 7.3e-67 258.1 183 68.3
Medtr1g017450 Medicago truncatula HOM05D007224 ORTHO05D009169 1.3e-66 257.3 239 56.1
FAN15G3290 Fragaria x ananassa HOM05D007224 ORTHO05D009169 3.6e-66 255.8 191 66.0
SalBow7G4028 Salvia bowleyana HOM05D007224 ORTHO05D009169 3.6e-66 255.8 220 60.9
TAR628G0831 Trochodendron aralioides HOM05D007224 ORTHO05D009169 4.8e-66 255.4 256 52.0
Haze_22381 Corylus avellana HOM05D007224 ORTHO05D009169 1.4e-65 253.8 242 57.0
COL.COLO4_28456 Corchorus olitorius HOM05D007224 ORTHO05D009169 2.4e-65 253.1 232 58.2
unitig_52.g17426 Utricularia gibba HOM05D007224 ORTHO05D009169 3.1e-65 252.7 217 59.4
Dinv44928 Davidia involucrata HOM05D007224 ORTHO05D009169 6.9e-65 251.5 273 51.6
Lsat_1_v5_gn_0_47281 Lactuca sativa HOM05D007224 ORTHO05D009169 1.7e-63 246.9 227 54.2
Lalb_Chr22g0355811 Lupinus albus HOM05D007224 ORTHO05D009169 2.2e-63 246.5 248 53.2
VMungo0647G2475 Vigna mungo HOM05D007224 ORTHO05D009169 3.8e-63 245.7 250 52.8
Phvul.001G031100 Phaseolus vulgaris HOM05D007224 ORTHO05D009169 1.9e-62 243.4 201 60.2
Cc10_g07670 Coffea canephora HOM05D007224 ORTHO05D009169 4.2e-62 242.3 230 58.3
Glyma.17G232300 Glycine max HOM05D007224 ORTHO05D009169 7.1e-62 241.5 252 52.4
Migut.C00453 Erythranthe guttata HOM05D007224 ORTHO05D009169 3.5e-61 239.2 222 56.3
ATR0739G089 Amborella trichopoda HOM05D007224 ORTHO05D009169 6.0e-61 238.4 184 62.5
HPP92_007712 Vanilla planifolia HOM05D007224 ORTHO05D009169 1.3e-60 237.3 261 49.8
Peaxi162Scf01161g00120 Petunia axillaris HOM05D007224 ORTHO05D009169 3.0e-60 236.1 257 51.8
Zm00001eb056020 Zea mays HOM05D007224 ORTHO05D009169 1.3e-58 230.7 272 48.9
MBI16_g06074_MAGBIO Magnolia biondii HOM05D007224 ORTHO05D009169 1.6e-58 230.3 211 54.5
Sabra02G0090900 Salix brachista HOM05D007224 ORTHO05D009169 2.8e-58 229.6 311 44.4
SGA_v2.0_scaffold238G43907 Striga asiatica HOM05D007224 ORTHO05D009169 6.2e-58 228.4 224 54.0
Aqoxy6G02448 Aquilegia oxysepala HOM05D007224 ORTHO05D009169 1.1e-57 227.6 183 62.3
arahy.Tifrunner.gnm1.ann1.TQ0B6U Arachis hypogaea HOM05D007224 ORTHO05D009169 2.4e-57 226.5 205 56.6
Nitab4.5_0010252g0010 Nicotiana tabacum HOM05D007224 ORTHO05D009169 2.6e-56 223.0 178 62.9
Os03g0729100 Oryza sativa ssp. japonica HOM05D007224 ORTHO05D009169 3.0e-52 209.5 199 56.8
ECA232G4225 Erigeron canadensis HOM05D007224 ORTHO05D009169 2.1e-50 203.4 138 69.6
SMO147G0155 Selaginella moellendorffii HOM05D007224 ORTHO05D009169 2.0e-48 196.8 181 52.5
Mapoly0039s0075 Marchantia polymorpha HOM05D007224 ORTHO05D009169 4.5e-48 195.7 194 51.0
Actinidia19293 Actinidia chinensis HOM05D007224 ORTHO05D009169 1.9e-46 190.3 127 73.2
arahy.Tifrunner.gnm1.ann1.XZQ8AB Arachis hypogaea HOM05D007224 ORTHO05D009169 9.3e-46 188.0 173 55.5
Pp3c6_15140 Physcomitrium patens HOM05D007224 ORTHO05D009169 5.1e-44 182.2 214 46.3
CDE07G0245 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 6.7e-44 181.8 180 51.1
CBR_g45556 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-43 180.3 212 47.2
Sed0020426 Sechium edule HOM05D007224 ORTHO05D009169 2.6e-40 169.9 167 55.1
Haze_22389 Corylus avellana HOM05D007224 ORTHO05D009169 1.0e-36 157.9 199 51.8
Cre13.g569250 Chlamydomonas reinhardtii HOM05D007224 ORTHO05D009169 3.4e-32 142.9 202 44.1
AUR62024535 Chenopodium quinoa HOM05D007224 ORTHO05D009169 4.2e-30 136.0 95 71.6
AUR62033890 Chenopodium quinoa HOM05D007224 ORTHO05D009169 1.2e-29 134.4 127 57.5
Cpa.g.sc2059.2 Carica papaya HOM05D007224 ORTHO05D009169 2.7e-29 133.3 153 48.4
Glyma.14G089100 Glycine max HOM05D007224 ORTHO05D009169 2.0e-27 127.1 92 63.0
MCO05G240 Micromonas commoda HOM05D007224 ORTHO05D009169 5.5e-22 109.0 199 37.7
Zm00001eb035950 Zea mays HOM05D007224 ORTHO05D009169 4.4e-19 99.4 76 59.2
Zm00001eb141580 Zea mays HOM05D007224 ORTHO05D445531 9.4e-14 81.6 94 47.9
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 3.4e-11 73.2 43 81.4


User provided reference genes

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