Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 6.3e-166 587.4 308 100.0
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 1.7e-142 509.6 307 87.3
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 1.7e-142 509.6 308 87.7
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 1.7e-142 509.6 308 87.7
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 1.4e-141 506.5 306 87.3
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 1.8e-141 506.1 306 86.9
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 5.4e-141 504.6 309 85.8
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 7.0e-141 504.2 309 86.4
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 2.0e-140 502.7 310 86.8
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 4.6e-140 501.5 307 87.0
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 5.0e-139 498.0 306 85.6
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 5.0e-139 498.0 306 85.6
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 5.0e-139 498.0 306 85.6
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 1.4e-136 490.0 309 84.5
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 1.8e-136 489.6 308 83.8
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 4.0e-136 488.4 310 83.9
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 2.0e-135 486.1 308 83.4
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 5.6e-130 468.0 306 81.4
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 3.5e-124 448.7 317 75.4
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 8.4e-118 427.6 312 75.0
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 2.2e-102 376.3 322 64.3
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 5.4e-101 371.7 306 67.0
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 1.2e-100 370.5 321 64.8
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 2.3e-99 366.3 328 61.9
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 2.3e-99 366.3 323 61.9
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 3.0e-99 365.9 324 62.3
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 3.9e-99 365.5 323 61.6
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 8.7e-99 364.4 320 62.5
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 8.7e-99 364.4 321 62.0
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 5.6e-98 361.7 318 63.2
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 9.6e-98 360.9 323 62.5
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 1.6e-97 360.1 318 60.7
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 2.8e-97 359.4 323 61.0
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 4.8e-97 358.6 316 61.7
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 1.4e-96 357.1 319 61.4
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 1.4e-96 357.1 326 58.9
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 1.4e-96 357.1 321 61.1
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 2.4e-96 356.3 334 59.3
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 3.1e-96 355.9 317 60.3
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 3.1e-96 355.9 320 61.6
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 4.5e-95 352.1 308 62.0
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 7.6e-95 351.3 321 61.4
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 9.9e-95 350.9 319 61.1
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 1.7e-94 350.1 320 60.9
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 2.9e-94 349.4 322 61.2
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 2.9e-94 349.4 321 60.1
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 6.4e-94 348.2 326 60.1
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 8.4e-94 347.8 321 60.4
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 8.4e-94 347.8 320 61.2
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 8.4e-94 347.8 313 60.1
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 1.1e-93 347.4 321 61.7
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 1.4e-93 347.1 319 58.9
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 1.9e-93 346.7 321 60.1
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 3.2e-93 345.9 318 62.3
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 4.2e-93 345.5 326 59.8
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 7.1e-93 344.7 326 60.4
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 1.6e-92 343.6 318 60.4
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 3.5e-92 342.4 315 60.6
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 4.6e-92 342.0 320 60.0
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.0e-91 340.9 333 57.4
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 1.8e-91 340.1 330 60.0
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 3.9e-91 339.0 324 57.1
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 3.3e-90 335.9 318 58.5
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 1.3e-89 334.0 373 53.4
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 2.1e-89 333.2 318 58.8
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 2.1e-89 333.2 318 58.2
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 2.8e-89 332.8 307 61.2
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 2.8e-89 332.8 315 56.5
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 2.8e-89 332.8 328 55.8
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 8.2e-89 331.3 315 58.4
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 8.2e-89 331.3 315 58.4
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 1.4e-88 330.5 310 61.0
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 3.1e-88 329.3 306 60.1
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 5.3e-88 328.6 361 54.0
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 1.2e-87 327.4 315 58.1
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 2.0e-87 326.6 315 56.2
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 2.6e-87 326.2 341 54.0
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 2.6e-87 326.2 328 57.3
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 5.8e-87 325.1 309 59.2
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 1.0e-86 324.3 317 56.5
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 1.0e-86 324.3 317 56.8
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 4.9e-86 322.0 323 56.7
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 4.9e-86 322.0 313 57.2
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 5.5e-85 318.5 320 56.2
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 3.0e-83 312.8 316 55.4
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 6.7e-83 311.6 305 57.4
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 2.5e-82 309.7 315 55.9
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.5e-82 309.7 311 56.9
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 7.4e-82 308.1 322 55.9
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 9.7e-82 307.8 372 49.5
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 9.7e-82 307.8 375 50.7
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 8.2e-81 304.7 317 54.3
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 1.4e-80 303.9 339 53.1
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 6.9e-80 301.6 308 54.9
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 1.0e-78 297.7 322 53.4
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 1.3e-78 297.4 318 55.0
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 3.8e-78 295.8 313 55.3
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 8.5e-78 294.7 318 55.0
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 7.2e-77 291.6 299 56.9
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 2.1e-76 290.0 267 60.3
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 1.4e-75 287.3 314 52.9
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 1.8e-75 287.0 264 61.4
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 5.7e-74 282.0 306 53.3
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 1.4e-72 277.3 315 48.9
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 1.8e-72 276.9 252 59.9
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 1.0e-70 271.2 177 76.3
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 9.7e-66 254.6 307 52.1
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.8e-65 252.3 322 50.6
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.2e-63 247.7 361 46.8
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 3.6e-60 236.1 296 47.6
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 6.1e-60 235.3 269 52.8
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 6.7e-59 231.9 305 45.9
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 2.2e-57 226.9 325 45.2
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 5.3e-56 222.2 316 46.8
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 1.6e-55 220.7 308 42.2
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 7.2e-53 211.8 272 47.4
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 1.1e-45 188.0 208 45.2
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 9.8e-42 174.9 320 38.1
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 5.4e-40 169.1 112 76.8
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 2.3e-38 163.7 175 46.9
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 6.8e-35 152.1 181 50.8
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 6.3e-33 145.6 105 70.5
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 2.4e-32 143.7 110 66.4
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.1e-32 143.3 262 39.3
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 2.3e-30 137.1 135 57.8
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 8.6e-30 135.2 240 39.2
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 3.5e-23 113.2 198 43.9
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 3.6e-20 103.2 79 63.3
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 2.7e-15 87.0 337 27.9
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 3.3e-13 80.1 78 56.4
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 2.1e-12 77.4 46 78.3
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 2.1e-12 77.4 46 78.3
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 2.1e-12 77.4 46 78.3
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 2.8e-12 77.0 54 70.4
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 1.4e-11 74.7 67 53.7
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 3.1e-11 73.6 45 75.6
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 6.8e-11 72.4 107 46.7
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 3.4e-10 70.1 54 63.0
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.6e-07 61.2 105 41.0
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 1.3e-06 58.2 53 54.7
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 1.7e-06 57.8 51 58.8


User provided reference genes

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