Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 2.4e-204 715.7 415 100.0
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 4.8e-157 558.5 416 77.4
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.9e-137 493.4 411 70.3
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 4.0e-135 485.7 413 69.2
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 1.5e-134 483.8 410 71.2
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 1.6e-123 447.2 419 66.8
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 2.7e-123 446.4 419 66.8
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 5.2e-119 432.2 408 66.7
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 1.7e-114 417.2 399 66.7
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 2.3e-111 406.8 411 64.5
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 3.4e-110 402.9 430 59.3
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 1.8e-103 380.6 430 61.6
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 9.6e-97 358.2 431 58.7
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 1.1e-95 354.8 425 59.1
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.3e-88 331.3 428 55.8
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 1.3e-88 331.3 422 57.1
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 6.9e-87 325.5 418 57.4
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 2.4e-84 317.0 433 53.6
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 9.3e-84 315.1 429 54.5
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 5.6e-81 305.8 432 50.9
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 1.5e-78 297.7 436 46.1
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 2.2e-77 293.9 425 49.9
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 4.2e-76 289.7 439 48.1
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 9.3e-76 288.5 411 48.2
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 3.9e-74 283.1 441 47.8
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 6.7e-74 282.3 429 48.0
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 2.5e-73 280.4 422 49.3
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 3.3e-73 280.0 422 45.7
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 4.3e-73 279.6 417 49.6
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 7.4e-73 278.9 445 48.5
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 1.3e-72 278.1 421 49.4
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 2.8e-72 276.9 452 43.6
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 4.0e-71 273.1 446 49.3
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 1.2e-70 271.6 447 46.5
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 1.5e-70 271.2 442 43.7
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.0e-70 270.8 426 45.5
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 7.6e-70 268.9 419 49.2
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 1.0e-69 268.5 420 50.5
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.1e-68 265.0 425 50.6
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 1.1e-68 265.0 418 46.9
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 1.4e-68 264.6 432 44.7
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 1.4e-68 264.6 412 45.1
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 4.2e-68 263.1 446 47.5
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 5.5e-68 262.7 422 47.4
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 7.1e-68 262.3 439 47.8
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 9.3e-68 261.9 470 43.2
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 2.1e-67 260.8 422 46.0
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 7.9e-67 258.8 427 46.1
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 1.0e-66 258.5 426 45.1
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 1.8e-66 257.7 441 41.3
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 5.1e-66 256.1 448 41.1
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.1e-65 255.0 442 46.8
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 1.5e-65 254.6 445 44.7
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 3.3e-65 253.4 423 41.4
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 1.3e-64 251.5 427 43.6
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.6e-64 251.1 450 42.0
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.2e-64 250.8 430 42.1
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 2.2e-64 250.8 407 43.7
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.8e-64 250.4 426 42.5
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 8.2e-64 248.8 422 41.7
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 8.2e-64 248.8 443 40.6
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 1.4e-63 248.1 513 41.3
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.4e-63 248.1 427 45.0
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 1.8e-63 247.7 440 44.1
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 2.4e-63 247.3 464 45.3
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 3.1e-63 246.9 439 46.7
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 5.3e-63 246.1 455 45.7
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 6.9e-63 245.7 448 46.2
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.2e-62 245.0 429 46.6
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 1.5e-62 244.6 419 45.8
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 2.6e-62 243.8 428 47.7
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 2.9e-61 240.4 503 41.9
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 1.1e-60 238.4 417 41.5
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 2.5e-60 237.3 437 39.4
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 2.5e-60 237.3 379 48.3
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 9.4e-60 235.3 425 40.0
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 2.7e-59 233.8 435 44.4
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 4.6e-59 233.0 416 40.9
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 6.1e-59 232.6 450 42.2
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 1.8e-58 231.1 441 39.9
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 1.1e-57 228.4 393 42.0
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 3.3e-57 226.9 417 39.1
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 5.7e-57 226.1 420 40.2
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 1.3e-56 224.9 422 42.7
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 1.1e-55 221.9 402 40.0
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 4.1e-55 219.9 405 39.0
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 5.3e-55 219.5 345 50.1
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 1.5e-54 218.0 434 38.2
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.4e-54 216.9 407 44.5
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 1.0e-53 215.3 425 39.3
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 5.0e-53 213.0 388 41.5
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 5.0e-53 213.0 410 38.8
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 3.2e-52 210.3 396 40.4
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 4.2e-52 209.9 390 41.0
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 5.5e-52 209.5 422 37.2
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 1.6e-51 208.0 415 39.3
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.1e-51 207.6 408 45.8
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 2.1e-51 207.6 414 40.6
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 1.8e-50 204.5 410 40.2
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 2.2e-48 197.6 399 39.6
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 2.2e-48 197.6 407 38.8
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 6.3e-48 196.1 265 50.2
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 1.4e-47 194.9 455 35.6
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 7.0e-47 192.6 389 39.1
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 9.1e-47 192.2 555 36.0
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 1.4e-44 184.9 396 41.2
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 1.8e-42 177.9 299 47.8
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 3.0e-42 177.2 354 41.0
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 1.1e-41 175.3 298 43.6
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 4.2e-36 156.8 381 35.7
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 3.0e-34 150.6 138 63.8
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 4.1e-31 140.2 460 34.3
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 4.1e-31 140.2 229 42.4
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 2.2e-29 134.4 362 40.1
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 2.9e-29 134.0 274 36.9
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 3.8e-29 133.7 433 33.5
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.5e-28 131.7 410 30.0
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 2.1e-27 127.9 439 32.6
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 3.6e-27 127.1 128 53.9
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.4e-26 125.2 220 40.9
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.4e-26 125.2 98 66.3
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.4e-23 114.4 394 29.9
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 9.8e-17 92.4 170 39.4
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 1.3e-16 92.0 210 34.8
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.1e-15 89.0 101 48.5
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 1.8e-15 88.2 91 48.4
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 2.7e-14 84.3 172 37.2
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.1e-12 79.0 127 43.3
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 6.1e-11 73.2 284 31.0
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 1.5e-09 68.6 92 47.8
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 2.6e-09 67.8 61 55.7
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 1.3e-08 65.5 58 53.4
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.3e-08 65.5 58 51.7
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 3.7e-08 63.9 318 32.1
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 8.3e-08 62.8 56 51.8
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.2e-06 58.9 66 47.0


User provided reference genes

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