Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 8.6e-230 800.0 425 100.0
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 2.7e-199 698.7 418 86.1
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 2.7e-199 698.7 418 86.1
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 3.5e-199 698.4 425 84.9
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 1.0e-198 696.8 418 85.9
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 6.6e-198 694.1 425 84.5
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 6.6e-198 694.1 425 84.5
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 3.1e-195 685.3 425 82.1
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 1.2e-194 683.3 442 79.9
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 2.2e-193 679.1 425 82.4
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 9.2e-192 673.7 425 81.9
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.2e-188 663.3 417 82.0
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 1.3e-145 520.4 430 64.7
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 6.1e-143 511.5 433 64.9
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 2.3e-142 509.6 433 64.4
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 2.3e-142 509.6 433 64.4
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 3.9e-142 508.8 440 62.5
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 1.5e-141 506.9 431 64.3
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 3.3e-141 505.8 430 62.1
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 7.4e-141 504.6 431 63.3
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 9.7e-141 504.2 433 63.7
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 1.7e-140 503.4 432 63.7
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 3.7e-140 502.3 443 60.7
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 8.2e-140 501.1 429 62.0
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 8.2e-140 501.1 432 62.0
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 1.1e-139 500.7 427 62.1
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 1.1e-139 500.7 427 63.9
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 1.1e-139 500.7 437 62.7
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 1.4e-139 500.4 429 63.6
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 3.1e-139 499.2 432 61.8
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 1.5e-138 496.9 443 60.0
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 1.3e-137 493.8 330 74.2
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 1.7e-137 493.4 329 74.5
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 2.2e-137 493.0 434 62.0
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 2.2e-137 493.0 329 74.5
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 2.2e-137 493.0 433 63.0
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 2.9e-137 492.7 332 73.8
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 3.8e-137 492.3 423 62.6
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 8.5e-137 491.1 330 73.9
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 8.5e-137 491.1 433 62.4
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 1.1e-136 490.7 330 73.3
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 5.5e-136 488.4 330 73.9
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 7.2e-136 488.0 431 62.2
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 9.4e-136 487.6 437 59.0
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 9.4e-136 487.6 329 73.9
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 9.4e-136 487.6 439 62.2
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 1.6e-135 486.9 447 58.8
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 1.6e-135 486.9 329 72.6
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 1.6e-135 486.9 317 76.0
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 2.1e-135 486.5 329 73.6
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 2.7e-135 486.1 327 73.4
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 3.6e-135 485.7 329 73.3
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 3.6e-135 485.7 408 66.2
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 3.6e-135 485.7 439 59.7
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 3.6e-135 485.7 436 62.8
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 4.7e-135 485.3 329 72.9
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 4.7e-135 485.3 327 73.7
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 1.0e-134 484.2 430 61.4
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 1.4e-134 483.8 329 72.9
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 1.4e-134 483.8 325 74.2
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 1.8e-134 483.4 436 58.3
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 1.8e-134 483.4 327 73.4
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.8e-134 483.4 329 73.3
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 3.9e-134 482.3 329 73.3
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 3.9e-134 482.3 328 73.2
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 6.7e-134 481.5 329 72.9
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 6.7e-134 481.5 329 72.9
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 8.8e-134 481.1 320 74.7
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 8.8e-134 481.1 320 74.7
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 8.8e-134 481.1 329 73.6
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 8.8e-134 481.1 327 72.5
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 1.1e-133 480.7 327 73.1
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 1.1e-133 480.7 329 72.6
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 1.5e-133 480.3 330 72.7
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 1.5e-133 480.3 329 72.3
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 1.5e-133 480.3 329 72.3
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 2.6e-133 479.6 327 72.5
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 3.3e-133 479.2 456 57.2
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 4.4e-133 478.8 317 74.1
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 4.4e-133 478.8 317 74.1
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 4.4e-133 478.8 327 72.2
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 5.7e-133 478.4 442 61.1
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 9.7e-133 477.6 327 71.9
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 1.3e-132 477.2 429 61.3
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 1.3e-132 477.2 315 74.6
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.3e-132 477.2 320 73.4
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 2.2e-132 476.5 343 70.6
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 2.2e-132 476.5 321 73.5
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 2.2e-132 476.5 320 73.1
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 2.8e-132 476.1 329 72.3
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 2.8e-132 476.1 329 72.3
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 3.7e-132 475.7 327 72.5
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 3.7e-132 475.7 315 74.3
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 4.8e-132 475.3 430 61.6
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 6.3e-132 474.9 346 70.8
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 6.3e-132 474.9 334 70.4
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 1.8e-131 473.4 320 73.1
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 3.1e-131 472.6 317 73.5
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 3.1e-131 472.6 325 72.0
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 9.1e-131 471.1 332 70.2
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.6e-130 470.3 317 73.2
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 1.6e-130 470.3 356 68.0
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 4.5e-130 468.8 338 69.8
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 5.9e-130 468.4 326 70.2
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 1.3e-129 467.2 315 73.3
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.3e-129 467.2 315 73.3
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 1.3e-129 467.2 328 70.7
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 2.9e-129 466.1 317 72.9
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.5e-128 463.8 279 82.1
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 5.5e-128 461.8 361 65.7
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 1.2e-127 460.7 317 71.3
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 1.4e-126 457.2 328 69.5
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 2.8e-124 449.5 313 69.3
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 1.2e-122 444.1 326 69.0
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 1.2e-122 444.1 326 69.0
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 1.2e-122 444.1 347 64.0
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 2.0e-122 443.4 328 67.1
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 1.0e-121 441.0 330 67.3
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 1.1e-120 437.6 328 65.9
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 9.4e-120 434.5 327 66.4
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 1.6e-119 433.7 327 66.4
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 3.6e-119 432.6 328 66.2
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 3.6e-119 432.6 328 66.2
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 4.8e-116 422.2 329 66.0
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 1.0e-113 414.5 317 64.0
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 3.8e-113 412.5 329 65.0
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 6.1e-111 405.2 282 71.6
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 1.9e-104 383.6 330 58.8
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 2.1e-103 380.2 264 69.7
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 8.9e-102 374.8 275 68.0
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 1.3e-100 370.9 347 57.1
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.9e-99 367.1 331 60.4
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 3.0e-97 359.8 246 72.0
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 8.6e-97 358.2 337 54.3
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 5.8e-93 345.5 321 54.5
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 2.2e-92 343.6 233 71.2
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 7.3e-80 302.0 222 66.2
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 2.1e-79 300.4 224 67.4
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 2.9e-76 290.0 280 56.4
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 2.4e-70 270.4 209 63.2
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 5.1e-65 252.7 186 63.4
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 5.4e-59 232.6 228 55.7
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 4.6e-58 229.6 197 59.4
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 7.4e-48 195.7 204 53.4
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 1.1e-46 191.8 276 42.4
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 2.9e-44 183.7 123 65.0
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.6e-39 167.9 178 49.4
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 1.7e-36 157.9 315 35.2
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 4.2e-35 153.3 125 57.6
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 9.4e-35 152.1 148 54.7
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 6.1e-34 149.4 101 67.3
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 7.9e-34 149.1 101 66.3
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 1.8e-33 147.9 175 45.1
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 6.7e-33 146.0 104 65.4
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 8.2e-31 139.0 100 64.0
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 1.5e-29 134.8 97 59.8
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 3.8e-28 130.2 76 73.7
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.6e-26 123.6 83 75.9
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 4.7e-26 123.2 121 49.6
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 6.7e-25 119.4 76 67.1
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 2.0e-24 117.9 224 35.3
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 9.7e-24 115.5 105 51.4
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 1.3e-23 115.2 114 52.6
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.2e-21 108.6 140 47.1
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.5e-21 108.2 72 75.0
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 5.5e-19 99.8 109 51.4
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 4.7e-18 96.7 74 68.9
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 1.2e-13 82.0 96 45.8
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 2.9e-12 77.4 66 56.1
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 3.4e-08 63.9 59 50.8
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 9.7e-08 62.4 49 65.3
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 9.7e-08 62.4 36 83.3


User provided reference genes

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