Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g32410 Schrenkiella parvula HOM05D006715 ORTHO05D008345 0.0e+00 1214.1 602 100.0
Thhalv10003905m.g Eutrema salsugineum HOM05D006715 ORTHO05D008345 2.0e-256 889.0 574 78.9
BcaB01g02294 Brassica carinata HOM05D006715 ORTHO05D008345 3.8e-231 805.1 580 73.8
BcaC04g24108 Brassica carinata HOM05D006715 ORTHO05D008345 9.9e-224 780.4 581 73.8
AL1G51600 Arabidopsis lyrata HOM05D006715 ORTHO05D008345 2.5e-219 765.8 577 69.8
AT1G43245 Arabidopsis thaliana HOM05D006715 ORTHO05D008345 5.8e-208 728.0 574 68.5
Aa31LG6G9940 Aethionema arabicum HOM05D006715 ORTHO05D008345 2.8e-194 682.6 618 60.7
BolC9t53031H Brassica oleracea HOM05D006715 ORTHO05D008345 1.1e-193 680.6 504 73.8
C09p00980 Brassica napus HOM05D006715 ORTHO05D008345 3.4e-192 675.6 509 72.5
A09p00880 Brassica napus HOM05D006715 ORTHO05D008345 1.0e-191 674.1 513 71.9
BraA09t35760Z Brassica rapa HOM05D006715 ORTHO05D008345 4.7e-189 665.2 546 68.3
THA.LOC104804670 Tarenaya hassleriana HOM05D006715 ORTHO05D008345 2.9e-167 592.8 616 53.7
CARHR035370 Cardamine hirsuta HOM05D006715 ORTHO05D008345 3.1e-140 503.1 398 67.8
Manes.02G180601 Manihot esculenta HOM05D006715 ORTHO05D008345 2.6e-123 446.8 664 41.4
Gorai.010G134600 Gossypium raimondii HOM05D006715 ORTHO05D008345 7.8e-120 435.3 626 43.1
Gohir.A06G112504 Gossypium hirsutum HOM05D006715 ORTHO05D008345 2.8e-117 426.8 631 43.1
Duzib093G1010 Durio zibethinus HOM05D006715 ORTHO05D008345 8.1e-117 425.2 657 40.6
Carub.0001s3453 Capsella rubella HOM05D006715 ORTHO05D008345 1.8e-116 424.1 313 69.6
Thecc.08G154500 Theobroma cacao HOM05D006715 ORTHO05D008345 3.1e-116 423.3 642 41.4
Cfa018312 Carpinus fangiana HOM05D006715 ORTHO05D008345 3.2e-113 413.3 647 41.4
MELO3C025024.2 Cucumis melo HOM05D006715 ORTHO05D008345 2.7e-112 410.2 651 41.3
RcHm_v2.0_Chr6g0275051 Rosa chinensis HOM05D006715 ORTHO05D008345 6.0e-112 409.1 655 39.4
Cpa.g.sc1027.1 Carica papaya HOM05D006715 ORTHO05D008345 1.1e-110 404.8 594 42.3
TWI34G0194 Tripterygium wilfordii HOM05D006715 ORTHO05D008345 1.1e-110 404.8 685 38.5
Ciclev10000601m.g Citrus clementina HOM05D006715 ORTHO05D008345 4.3e-110 402.9 633 40.8
FvH4_2g13430 Fragaria vesca HOM05D006715 ORTHO05D008345 7.4e-110 402.1 645 39.7
FAN24G1213 Fragaria x ananassa HOM05D006715 ORTHO05D008345 9.6e-110 401.7 645 39.7
MD05G1027900 Malus domestica HOM05D006715 ORTHO05D008345 3.6e-109 399.8 664 38.7
ClCG08G002210 Citrullus lanatus HOM05D006715 ORTHO05D008345 8.1e-109 398.7 643 38.6
CANSAT25G3857 Cannabis sativa HOM05D006715 ORTHO05D008345 1.2e-107 394.8 680 39.9
QL09p013340 Quercus lobata HOM05D006715 ORTHO05D008345 1.7e-106 391.0 632 39.9
Lj7A376T34 Lonicera japonica HOM05D006715 ORTHO05D008345 2.2e-106 390.6 650 39.1
Prupe.8G033600 Prunus persica HOM05D006715 ORTHO05D008345 9.3e-105 385.2 655 38.8
CiPaw.16G011000 Carya illinoinensis HOM05D006715 ORTHO05D008345 3.5e-104 383.3 596 41.4
arahy.Tifrunner.gnm1.ann1.6MC3QX Arachis hypogaea HOM05D006715 ORTHO05D008345 1.0e-103 381.7 669 38.3
Sed0009104 Sechium edule HOM05D006715 ORTHO05D008345 1.5e-102 377.9 648 38.0
Lsat_1_v5_gn_9_41180 Lactuca sativa HOM05D006715 ORTHO05D008345 1.3e-101 374.8 601 39.8
Lj2g0009741 Lotus japonicus HOM05D006715 ORTHO05D008345 2.8e-101 373.6 640 38.3
arahy.Tifrunner.gnm1.ann1.SG7PGU Arachis hypogaea HOM05D006715 ORTHO05D008345 3.7e-101 373.2 686 36.9
Actinidia17784 Actinidia chinensis HOM05D006715 ORTHO05D008345 6.2e-101 372.5 657 37.3
VMungo0464G1764 Vigna mungo HOM05D006715 ORTHO05D008345 5.3e-100 369.4 649 37.6
Aqoxy5G00857 Aquilegia oxysepala HOM05D006715 ORTHO05D008345 1.2e-99 368.2 642 37.7
Atru.chr13.2084 Acer truncatum HOM05D006715 ORTHO05D008345 1.5e-99 367.9 632 39.7
PGR042G1662 Punica granatum HOM05D006715 ORTHO05D008345 2.6e-99 367.1 638 38.1
Potri.005G193500 Populus trichocarpa HOM05D006715 ORTHO05D008345 1.0e-98 365.2 644 39.0
Phvul.004G094200 Phaseolus vulgaris HOM05D006715 ORTHO05D008345 1.3e-98 364.8 626 38.8
Medtr2g045070 Medicago truncatula HOM05D006715 ORTHO05D008345 2.9e-98 363.6 641 38.4
Psat1g102000 Pisum sativum HOM05D006715 ORTHO05D008345 3.8e-98 363.2 632 37.5
RcHm_v2.0_Chr5g0050861 Rosa chinensis HOM05D006715 ORTHO05D008345 2.1e-96 357.5 536 39.9
SGA_v2.0_scaffold25G11186 Striga asiatica HOM05D006715 ORTHO05D008345 3.3e-94 350.1 661 36.6
Sopen04g027550 Solanum pennellii HOM05D006715 ORTHO05D008345 2.1e-93 347.4 668 35.8
COL.COLO4_29857 Corchorus olitorius HOM05D006715 ORTHO05D008345 1.1e-92 345.1 476 41.8
CsaV3_6G002600 Cucumis sativus L. HOM05D006715 ORTHO05D008345 6.9e-92 342.4 492 43.3
TAR381G1273 Trochodendron aralioides HOM05D006715 ORTHO05D008345 9.0e-92 342.0 685 35.5
Eucgr.F02698 Eucalyptus grandis HOM05D006715 ORTHO05D008345 3.4e-91 340.1 668 36.7
Hund26691 Selenicereus undatus HOM05D006715 ORTHO05D008345 3.4e-91 340.1 679 35.2
Nitab4.5_0001187g0100 Nicotiana tabacum HOM05D006715 ORTHO05D008345 5.9e-91 339.3 665 36.4
CAN.G1215.10 Capsicum annuum HOM05D006715 ORTHO05D008345 2.9e-90 337.0 660 35.2
Nn5g28769 Nelumbo nucifera HOM05D006715 ORTHO05D008345 8.5e-90 335.5 684 34.5
FAN27G2814 Fragaria x ananassa HOM05D006715 ORTHO05D008345 1.4e-89 334.7 507 42.6
Gohir.D06G116900 Gossypium hirsutum HOM05D006715 ORTHO05D008345 7.2e-89 332.4 447 45.6
Migut.N03207 Erythranthe guttata HOM05D006715 ORTHO05D008345 1.6e-88 331.3 667 33.4
ECA232G1953 Erigeron canadensis HOM05D006715 ORTHO05D008345 1.3e-87 328.2 603 36.2
PSO675G4790 Papaver somniferum HOM05D006715 ORTHO05D008345 2.5e-86 323.9 671 34.0
TPR.G23114 Trifolium pratense HOM05D006715 ORTHO05D008345 4.3e-86 323.2 475 40.2
MSTRG.24217 Avicennia marina HOM05D006715 ORTHO05D008345 7.4e-86 322.4 734 31.6
Peaxi162Scf00599g00121 Petunia axillaris HOM05D006715 ORTHO05D008345 2.4e-84 317.4 623 34.8
HanXRQChr11g0320291 Helianthus annuus HOM05D006715 ORTHO05D008345 4.1e-84 316.6 596 37.4
GSVIVG01034549001 Vitis vinifera HOM05D006715 ORTHO05D008345 1.3e-82 311.6 493 37.5
unitig_21.g20147 Utricularia gibba HOM05D006715 ORTHO05D008345 3.2e-81 307.0 657 33.5
SalBow6G6609 Salvia bowleyana HOM05D006715 ORTHO05D008345 5.5e-81 306.2 639 32.7
Rhsim05G0181200 Rhododendron simsii HOM05D006715 ORTHO05D008345 1.2e-80 305.1 538 36.1
DCAR_010095 Daucus carota HOM05D006715 ORTHO05D008345 1.4e-79 301.6 469 38.6
Glyma.16G166500 Glycine max HOM05D006715 ORTHO05D008345 5.7e-78 296.2 644 34.9
vmacro20039 Vaccinium macrocarpon HOM05D006715 ORTHO05D008345 2.8e-77 293.9 646 32.8
CDE12G0089 Ceratophyllum demersum HOM05D006715 ORTHO05D008345 4.8e-77 293.1 646 33.3
SHI09071 Sapria himalayana HOM05D006715 ORTHO05D008345 6.5e-74 282.7 712 32.3
EL10Ac1g01568 Beta vulgaris HOM05D006715 ORTHO05D008345 9.4e-73 278.9 640 33.9
Carub.0001s3454 Capsella rubella HOM05D006715 ORTHO05D008345 9.4e-73 278.9 240 65.0
Zm00001eb083170 Zea mays HOM05D006715 ORTHO05D008345 6.1e-72 276.2 638 33.4
Ca_26954_v3 Cicer arietinum L. HOM05D006715 ORTHO05D008345 2.2e-69 267.7 511 37.6
ATR0820G173 Amborella trichopoda HOM05D006715 ORTHO05D008345 2.8e-69 267.3 673 32.1
Haze_17767 Corylus avellana HOM05D006715 ORTHO05D008345 3.5e-67 260.4 384 40.1
Os04g0423600 Oryza sativa ssp. japonica HOM05D006715 ORTHO05D008345 3.5e-67 260.4 653 30.2
Dinv41067 Davidia involucrata HOM05D006715 ORTHO05D008345 2.6e-62 244.2 310 45.5
PGSC0003DMG400024094 Solanum tuberosum HOM05D006715 ORTHO05D008345 1.7e-58 231.5 377 35.8
Cc10_g14930 Coffea canephora HOM05D006715 ORTHO05D008345 1.2e-51 208.8 315 41.3
AUR62026687 Chenopodium quinoa HOM05D006715 ORTHO05D008345 8.6e-50 202.6 322 35.7
Nitab4.5_0002764g0020 Nicotiana tabacum HOM05D006715 ORTHO05D008345 1.8e-47 194.9 353 34.6
Lalb_Chr01g0009551 Lupinus albus HOM05D006715 ORTHO05D008345 9.8e-46 189.1 308 40.3
MBI17_g41095_MAGBIO Magnolia biondii HOM05D006715 ORTHO05D008345 4.9e-45 186.8 365 35.6
Lalb_Chr01g0009561 Lupinus albus HOM05D006715 ORTHO05D008345 1.7e-42 178.3 297 37.7
Sc02g0003950 Simmondsia chinensis HOM05D006715 ORTHO05D008345 4.7e-40 170.2 225 42.2
Lj2g0026984 Lotus japonicus HOM05D006715 ORTHO05D008345 1.5e-38 165.2 202 43.6
SEGI_11470 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 5.7e-38 163.3 356 33.4
HPP92_009296 Vanilla planifolia HOM05D006715 ORTHO05D008345 5.7e-38 163.3 341 32.6
Glyma.16G166267 Glycine max HOM05D006715 ORTHO05D008345 2.9e-37 161.0 163 51.5
AUR62040600 Chenopodium quinoa HOM05D006715 ORTHO05D008345 1.7e-34 151.8 284 33.1
CSS0020422 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 3.0e-34 151.0 236 38.1
Glyma.16G166333 Glycine max HOM05D006715 ORTHO05D008345 7.5e-30 136.3 249 34.9
TAR381G1110 Trochodendron aralioides HOM05D006715 ORTHO05D008345 3.7e-29 134.0 264 33.3
Oeu031098.1 Olea europaea HOM05D006715 ORTHO05D008345 8.3e-29 132.9 373 33.0
Potri.005G193701 Populus trichocarpa HOM05D006715 ORTHO05D008345 7.3e-25 119.8 305 31.5
HPP92_009297 Vanilla planifolia HOM05D006715 ORTHO05D008345 6.2e-24 116.7 257 31.5
CSS0028068 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 4.4e-22 110.5 215 34.0
SEGI_20433 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 1.1e-20 105.9 253 33.2
SEGI_34185 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 1.9e-20 105.1 170 36.5
CSS0046539 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 1.7e-18 98.6 123 45.5
Gohir.1Z049355 Gossypium hirsutum HOM05D006715 ORTHO05D008345 3.6e-16 90.9 158 38.6
Medtr3g062560 Medicago truncatula HOM05D006715 ORTHO05D008345 1.1e-15 89.4 170 41.8
arahy.Tifrunner.gnm1.ann1.12T13Y Arachis hypogaea HOM05D006715 ORTHO05D008345 9.6e-09 66.2 75 45.3
Thecc.08G119000 Theobroma cacao HOM05D004492 ORTHO05D005602 3.6e-08 64.3 175 26.9
AagrBONN_evm.TU.Sc2ySwM_344.3949 Anthoceros agrestis HOM05D004492 ORTHO05D005602 3.1e-07 61.2 173 27.2
Thecc.08G119400 Theobroma cacao HOM05D004492 ORTHO05D005602 5.2e-07 60.5 147 28.6
Thecc.08G119300 Theobroma cacao HOM05D004492 ORTHO05D005602 6.9e-07 60.1 137 29.9
COL.COLO4_38230 Corchorus olitorius HOM05D004492 ORTHO05D005602 9.0e-07 59.7 203 26.6
Sc02g0003960 Simmondsia chinensis HOM05D006715 ORTHO05D008345 1.2e-06 59.3 96 43.8
CSS0028158 Camellia sinensis var. sinensis HOM05D004492 ORTHO05D005602 1.5e-06 58.9 266 24.4
CSS0038302 Camellia sinensis var. sinensis HOM05D004492 ORTHO05D005602 1.5e-06 58.9 266 24.4
Rhsim11G0066100 Rhododendron simsii HOM05D004492 ORTHO05D005602 3.4e-06 57.8 250 23.6
CsaV3_5G023260 Cucumis sativus L. HOM05D004492 ORTHO05D005602 4.4e-06 57.4 230 23.0
Mapoly0101s0047 Marchantia polymorpha HOM05D004492 ORTHO05D005602 4.4e-06 57.4 240 26.7
SEGI_04710 Sequoiadendron giganteum HOM05D004492 ORTHO05D005602 7.6e-06 56.6 200 26.0


User provided reference genes

Program Settings