Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 8.2e-188 660.2 331 100.0
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 4.0e-166 588.2 330 86.7
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 4.1e-163 578.2 330 86.4
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 5.4e-163 577.8 330 85.2
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 1.2e-162 576.6 331 85.8
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 1.6e-162 576.2 330 84.8
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 4.6e-162 574.7 330 84.8
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 4.6e-162 574.7 330 84.8
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 5.9e-162 574.3 330 84.8
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 7.8e-162 573.9 331 85.5
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 1.3e-161 573.2 330 85.5
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 2.9e-161 572.0 330 85.2
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 2.5e-160 568.9 330 83.9
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 5.6e-160 567.8 330 84.5
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 2.1e-159 565.8 330 83.3
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 2.1e-159 565.8 330 82.7
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 4.0e-158 561.6 330 82.7
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 2.6e-157 558.9 330 81.8
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 1.6e-138 496.5 330 71.5
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 7.3e-136 487.6 363 67.8
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 7.3e-136 487.6 363 68.0
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 8.9e-134 480.7 330 70.6
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 4.4e-133 478.4 330 70.3
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 5.8e-133 478.0 330 68.8
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 2.2e-132 476.1 330 69.1
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 2.9e-132 475.7 325 70.8
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 2.4e-131 472.6 325 70.5
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 9.3e-131 470.7 329 67.8
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 4.6e-130 468.4 330 68.8
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 7.8e-130 467.6 330 68.2
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 6.6e-129 464.5 330 67.6
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 9.6e-128 460.7 331 64.4
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 2.1e-127 459.5 331 69.8
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 4.8e-127 458.4 330 64.2
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.4e-126 456.8 331 68.9
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.8e-126 456.4 324 68.5
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 3.1e-126 455.7 326 69.0
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 4.0e-126 455.3 324 68.5
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 4.0e-126 455.3 331 68.3
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 1.2e-125 453.8 324 68.2
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 2.6e-125 452.6 331 68.0
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 3.4e-125 452.2 331 68.3
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 7.6e-125 451.1 331 67.7
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 7.6e-125 451.1 320 68.4
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 2.9e-124 449.1 330 62.7
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 4.9e-124 448.4 331 65.3
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 1.1e-123 447.2 330 63.3
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 1.9e-123 446.4 346 63.3
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 2.4e-123 446.0 330 63.3
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 2.4e-123 446.0 330 63.3
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 3.2e-123 445.7 331 67.1
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 4.2e-123 445.3 330 63.0
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 4.2e-123 445.3 323 65.9
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 2.7e-122 442.6 329 64.7
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 6.0e-122 441.4 332 63.9
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 1.0e-121 440.7 320 65.3
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 2.3e-121 439.5 332 65.1
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 5.1e-121 438.3 332 63.3
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 1.1e-120 437.2 332 62.7
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 5.6e-120 434.9 298 70.1
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 5.6e-120 434.9 320 65.0
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 9.6e-120 434.1 320 64.4
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 6.2e-119 431.4 323 66.9
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 5.3e-118 428.3 320 64.4
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 1.5e-117 426.8 326 62.0
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 5.8e-117 424.9 333 64.9
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 1.3e-116 423.7 325 64.9
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.7e-116 423.3 321 62.0
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 6.4e-116 421.4 326 63.5
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 1.4e-115 420.2 324 62.3
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 2.4e-115 419.5 324 61.7
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 2.1e-114 416.4 378 55.3
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 6.0e-114 414.8 323 60.4
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 7.9e-114 414.5 320 65.0
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 2.3e-113 412.9 352 60.8
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 6.7e-113 411.4 324 62.0
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.9e-112 409.8 385 56.1
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 2.5e-112 409.5 322 62.7
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 8.1e-111 404.4 365 55.3
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 8.1e-111 404.4 330 61.2
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 1.1e-110 404.1 292 65.8
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 4.0e-110 402.1 344 60.2
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 5.3e-110 401.7 322 60.9
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 9.0e-110 401.0 325 62.2
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.5e-109 400.2 344 59.9
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 5.8e-109 398.3 330 59.4
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 1.3e-108 397.1 324 59.9
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 2.2e-108 396.4 330 59.4
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 2.6e-101 372.9 326 61.3
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 5.9e-101 371.7 247 70.4
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 2.5e-99 366.3 326 54.6
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 1.0e-97 360.9 277 64.6
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 3.0e-97 359.4 292 60.3
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.1e-96 357.5 330 56.1
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 2.5e-96 356.3 223 77.1
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 7.4e-96 354.8 324 55.2
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 1.2e-93 347.4 263 64.6
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 5.0e-92 342.0 326 53.4
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 1.1e-91 340.9 332 52.1
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 1.9e-91 340.1 331 54.7
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 4.6e-90 335.5 255 63.1
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 8.8e-89 331.3 294 55.1
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 4.3e-88 328.9 244 67.2
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 3.1e-86 322.8 193 78.2
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 1.9e-83 313.5 324 50.9
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 2.0e-77 293.5 188 71.3
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 2.5e-75 286.6 210 64.3
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 8.0e-74 281.6 223 60.5
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 1.0e-73 281.2 331 44.7
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 1.5e-72 277.3 327 45.6
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 2.0e-69 266.9 335 43.9
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 4.5e-69 265.8 340 43.5
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 2.1e-66 256.9 165 68.5
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 7.7e-61 238.4 330 42.7
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 4.7e-58 229.2 170 67.6
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 7.0e-54 215.3 123 72.4
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.5e-51 207.6 151 62.3
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 6.6e-44 182.2 167 55.7
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 5.8e-40 169.1 315 33.7
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 2.2e-39 167.2 195 43.6
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 1.4e-38 164.5 120 68.3
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 3.9e-36 156.4 201 49.3
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 3.3e-35 153.3 349 30.1
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 1.6e-34 151.0 316 32.6
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 6.2e-34 149.1 153 51.6
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 5.8e-32 142.5 144 54.9
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 1.3e-31 141.4 357 29.7
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 1.2e-18 98.2 60 75.0
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 4.9e-15 86.3 73 53.4
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 1.6e-13 81.3 67 59.7
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 7.8e-13 79.0 245 24.5
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 3.3e-11 73.6 67 47.8
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 6.9e-09 65.9 66 48.5
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 1.3e-07 61.6 113 40.7
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 1.9e-06 57.8 65 44.6
Cfa001138 Carpinus fangiana HOM05D000398 ORTHO05D000551 9.3e-06 55.5 65 44.6


User provided reference genes

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