Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 2732.2 1406 100.0
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 2266.1 1416 83.3
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 2255.7 1260 94.0
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 2249.9 1420 84.0
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 2205.3 1422 82.8
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 2193.7 1426 81.1
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 2173.7 1413 81.9
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 2130.5 1409 81.4
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 2127.1 1408 80.3
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 2126.3 1394 80.8
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 2121.3 1408 80.0
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 2115.5 1404 80.6
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 2113.6 1404 80.5
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 2106.6 1423 78.7
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1882.1 1402 71.7
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1574.3 1447 60.1
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1547.3 1462 59.2
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1545.8 1431 59.7
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1540.4 1495 58.1
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1537.3 1478 58.4
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1525.8 1460 58.3
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1523.5 1467 58.4
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1503.4 1479 58.1
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1501.9 1480 57.0
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1501.1 1478 58.1
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1500.7 1481 56.7
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1495.7 1471 56.8
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1485.7 1490 57.3
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1483.8 1454 57.2
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1483.0 1470 57.5
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1458.7 1484 55.1
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1458.4 1474 56.6
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1450.3 1466 56.3
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1449.1 1465 56.1
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1442.2 1473 55.4
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1436.0 1485 54.7
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1435.6 1493 55.5
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1433.3 1473 55.5
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1432.5 1488 54.3
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1429.5 1465 54.6
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1428.3 1471 54.7
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1428.3 1455 55.4
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1427.2 1436 56.0
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1421.0 1477 55.1
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1418.7 1462 55.0
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1417.1 1422 56.2
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1414.8 1475 54.1
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1412.5 1459 55.8
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1410.6 1466 55.0
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1390.9 1469 54.1
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1387.1 1535 52.8
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1381.3 1488 53.4
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1376.7 1460 54.0
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1364.4 1464 54.3
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1362.4 1446 54.0
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1359.4 1488 52.1
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1358.6 1517 53.2
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1354.7 1439 55.0
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1349.3 1433 55.5
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1339.3 1439 53.2
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1338.2 1464 54.0
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1332.8 1482 52.2
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1330.1 1480 53.3
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1321.2 1477 52.9
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1318.5 1473 52.5
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1310.8 1455 52.0
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1302.0 1479 52.0
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1298.1 1403 53.1
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1295.4 1397 53.5
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1292.7 1325 55.3
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1285.8 1508 51.7
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1283.5 1458 51.9
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1270.4 1477 50.9
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1268.4 1379 53.6
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1267.7 1478 51.6
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1262.7 1212 58.3
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1262.7 1475 51.7
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1247.6 1473 50.5
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1230.7 1484 50.3
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1230.3 1276 55.4
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1212.6 1401 50.5
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1198.0 1432 48.5
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1192.2 1407 50.7
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1189.5 1264 53.6
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1182.9 1449 48.5
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1151.0 1381 49.0
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1121.7 1313 50.6
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 9.2e-305 1050.8 1116 54.8
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.4e-300 1036.9 1072 55.8
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 9.5e-294 1014.2 1137 52.7
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 4.0e-292 1008.8 1124 52.7
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 2.0e-291 1006.5 1137 52.4
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 5.8e-291 1005.0 1313 47.1
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 6.4e-282 974.9 912 58.3
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 3.7e-269 932.6 1311 44.9
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 4.1e-244 849.4 1051 49.9
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 3.8e-234 816.2 1487 37.7
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 7.2e-233 812.0 1519 37.6
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 8.8e-231 805.1 1449 38.0
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 4.5e-219 766.1 1506 36.4
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 1.8e-204 717.6 945 48.5
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 4.3e-201 706.4 1004 44.9
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 6.2e-192 676.0 814 49.5
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 3.9e-186 656.8 518 65.6
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 1.1e-159 568.9 1320 35.4
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 7.4e-153 546.2 1986 28.3
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 6.5e-141 506.5 432 62.7
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 2.6e-134 484.6 842 40.0
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 4.5e-134 483.8 337 78.3
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 2.9e-133 481.1 590 52.0
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 3.1e-127 461.1 577 50.4
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 6.1e-123 446.8 612 45.4
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 4.4e-121 440.7 279 81.4
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 4.5e-118 430.6 442 55.4
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 2.2e-112 411.8 441 54.2
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 6.1e-99 367.1 1291 29.7
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 3.2e-87 328.2 225 75.6
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 8.4e-64 250.4 392 42.1
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 8.4e-64 250.4 545 36.1
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 6.6e-53 214.2 258 47.7
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 1.8e-37 162.9 161 57.8
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 1.3e-24 120.2 98 63.3
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 5.5e-23 114.8 87 63.2
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 2.5e-20 105.9 85 63.5
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 5.7e-20 104.8 93 58.1
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 4.5e-17 95.1 80 58.8
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 1.9e-15 89.7 69 59.4
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 5.5e-15 88.2 86 59.3
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 1.2e-14 87.0 66 60.6
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 2.1e-14 86.3 87 49.4
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 2.3e-13 82.8 105 46.7
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 5.3e-10 71.6 52 61.5
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 1.3e-08 67.0 42 69.0
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 3.8e-08 65.5 97 42.3


User provided reference genes

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