Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 6.8e-179 630.6 324 100.0
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 9.3e-144 513.8 293 90.8
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 5.1e-142 508.1 295 89.5
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 4.1e-139 498.4 287 89.2
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 7.7e-138 494.2 292 89.0
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 2.2e-137 492.7 288 88.5
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 2.2e-137 492.7 288 88.5
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 5.0e-137 491.5 288 88.5
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 2.5e-136 489.2 310 84.5
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 5.5e-136 488.0 293 87.4
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 2.1e-135 486.1 293 85.7
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 1.1e-120 437.2 267 85.0
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 6.1e-119 431.4 293 76.8
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 5.9e-114 414.8 293 75.8
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 2.7e-103 379.4 281 72.2
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 3.5e-98 362.5 231 79.7
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 1.0e-97 360.9 228 77.6
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 1.3e-97 360.5 316 60.4
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 1.1e-96 357.5 232 77.6
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 2.5e-96 356.3 263 68.8
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 5.5e-96 355.1 269 69.5
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 1.2e-95 354.0 288 68.1
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 1.2e-95 354.0 222 79.7
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 2.8e-95 352.8 278 68.3
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 3.6e-95 352.4 223 80.3
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 3.6e-95 352.4 264 71.6
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 8.0e-95 351.3 248 72.6
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 1.0e-94 350.9 248 72.2
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 1.0e-94 350.9 222 80.2
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 2.3e-94 349.7 225 77.8
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 4.0e-94 349.0 296 64.9
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 4.0e-94 349.0 234 75.6
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 5.2e-94 348.6 216 79.6
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 5.2e-94 348.6 222 79.7
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 8.9e-94 347.8 322 60.6
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 1.2e-93 347.4 290 64.1
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 1.5e-93 347.1 288 64.6
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 2.6e-93 346.3 228 75.9
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 3.4e-93 345.9 280 68.6
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 4.4e-93 345.5 224 78.6
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 5.7e-93 345.1 285 64.6
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 7.5e-93 344.7 226 78.3
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 7.5e-93 344.7 290 64.1
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 9.8e-93 344.4 300 62.0
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 9.8e-93 344.4 285 64.6
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 2.2e-92 343.2 223 78.0
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 2.8e-92 342.8 232 73.7
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 2.8e-92 342.8 244 71.7
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 2.8e-92 342.8 226 77.9
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 3.7e-92 342.4 220 79.5
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 3.7e-92 342.4 232 76.7
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 4.9e-92 342.0 214 80.8
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 6.3e-92 341.7 226 75.7
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 1.1e-91 340.9 227 73.1
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 1.1e-91 340.9 226 78.3
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 2.4e-91 339.7 282 63.8
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 3.2e-91 339.3 281 62.6
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 5.4e-91 338.6 217 77.9
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 5.4e-91 338.6 217 77.9
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 1.6e-90 337.0 233 73.8
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 2.0e-90 336.7 229 73.4
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 4.5e-90 335.5 221 76.9
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 4.5e-90 335.5 217 77.4
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 5.9e-90 335.1 237 71.7
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 7.8e-90 334.7 227 74.4
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 7.8e-90 334.7 253 68.8
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 5.0e-89 332.0 211 77.3
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 5.0e-89 332.0 227 74.0
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 5.0e-89 332.0 232 72.8
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 6.6e-89 331.6 230 73.5
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 6.6e-89 331.6 230 73.5
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 3.3e-88 329.3 227 74.4
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 4.3e-88 328.9 227 72.7
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 5.6e-88 328.6 217 76.5
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 1.2e-87 327.4 240 70.4
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 1.6e-87 327.0 227 70.5
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 8.0e-87 324.7 202 80.7
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 1.8e-86 323.6 210 73.8
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 2.3e-86 323.2 198 79.3
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 2.3e-86 323.2 244 69.7
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 5.2e-86 322.0 241 68.9
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 4.4e-85 318.9 215 72.1
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.6e-82 310.5 211 74.4
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 6.6e-81 305.1 245 66.9
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 1.5e-80 303.9 216 71.8
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 1.5e-80 303.9 214 70.6
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 2.5e-80 303.1 191 80.1
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 3.3e-80 302.8 228 70.2
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 9.5e-80 301.2 211 73.9
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 9.5e-80 301.2 213 69.0
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 1.2e-79 300.8 288 64.6
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 2.8e-79 299.7 183 79.2
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 3.6e-79 299.3 180 81.7
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 4.0e-78 295.8 321 53.0
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 1.5e-77 293.9 183 77.6
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 9.2e-75 284.6 196 73.0
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 9.2e-75 284.6 190 74.2
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 6.0e-74 282.0 229 63.3
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 1.5e-72 277.3 188 72.3
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 1.6e-71 273.9 214 66.4
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 5.2e-70 268.9 163 82.8
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 6.8e-70 268.5 209 64.1
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 6.8e-70 268.5 219 66.7
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 3.4e-69 266.2 345 52.5
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 4.4e-69 265.8 248 59.7
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 2.2e-68 263.5 277 53.8
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 4.2e-59 232.6 248 59.3
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 1.6e-58 230.7 286 48.6
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 3.0e-57 226.5 208 62.0
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 6.0e-50 202.2 121 78.5
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 3.3e-48 196.4 132 75.0
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 8.1e-47 191.8 219 48.4
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 6.9e-46 188.7 228 47.4
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 1.5e-45 187.6 97 94.8
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 9.9e-45 184.9 97 93.8
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 2.4e-43 180.3 206 49.5
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 3.2e-43 179.9 117 76.9
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 8.7e-41 171.8 122 73.0
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 3.9e-33 146.4 113 68.1
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 7.4e-32 142.1 182 54.4
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 2.8e-31 140.2 82 81.7
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 4.1e-30 136.3 78 82.1
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 4.5e-29 132.9 78 83.3
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 2.7e-26 123.6 76 76.3
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 7.2e-19 99.0 50 96.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 9.4e-19 98.6 51 94.1
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 8.8e-17 92.0 78 66.7
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 7.4e-16 89.0 60 71.7
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 5.9e-13 79.3 53 73.6
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 4.2e-11 73.2 48 68.8
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 1.2e-10 71.6 55 61.8
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 2.3e-09 67.4 47 63.8
unitig_0.g10 Utricularia gibba HOM05D006042 ORTHO05D007658 2.3e-09 67.4 50 66.0
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 1.4e-06 58.2 47 57.4
Cpa.g.sc179.24 Carica papaya HOM05D006042 ORTHO05D007658 4.1e-06 56.6 40 65.0


User provided reference genes

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