Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.8e-140 502.7 272 100.0
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 2.3e-63 246.5 186 71.0
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 2.6e-62 243.0 185 70.3
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 4.4e-62 242.3 191 68.6
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 9.8e-62 241.1 186 68.8
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 9.8e-62 241.1 197 66.5
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.6e-59 233.8 197 65.5
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 1.6e-59 233.8 188 66.0
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 2.7e-59 233.0 197 64.0
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 1.0e-58 231.1 178 69.7
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 2.3e-58 229.9 185 66.5
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 6.6e-58 228.4 191 66.5
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.4e-55 220.7 184 66.8
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 3.4e-54 216.1 192 62.5
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 1.9e-52 210.3 189 60.8
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 2.0e-51 206.8 128 82.0
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 7.3e-49 198.4 187 59.9
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 4.9e-45 185.7 190 55.8
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 6.0e-43 178.7 193 58.5
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 3.3e-41 172.9 164 58.5
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 2.3e-34 150.2 191 41.9
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 3.0e-34 149.8 191 41.9
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 1.9e-33 147.1 191 43.5
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 4.3e-33 146.0 127 56.7
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 5.6e-33 145.6 202 39.1
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 5.6e-33 145.6 188 42.0
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 9.6e-33 144.8 197 44.2
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 8.1e-32 141.7 196 39.3
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 1.4e-31 141.0 194 40.2
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 1.8e-31 140.6 183 44.8
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 2.4e-31 140.2 196 40.3
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 4.0e-31 139.4 173 43.9
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 8.9e-31 138.3 173 43.4
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 8.9e-31 138.3 185 44.3
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.0e-30 137.1 197 42.6
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 4.4e-30 136.0 134 51.5
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 5.8e-30 135.6 190 40.5
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 7.6e-30 135.2 188 38.8
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 9.9e-30 134.8 195 38.5
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 9.9e-30 134.8 126 51.6
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 1.3e-29 134.4 192 38.0
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 1.7e-29 134.0 208 37.5
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 1.7e-29 134.0 193 38.9
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.2e-29 133.7 197 41.6
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 2.9e-29 133.3 208 38.0
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 3.8e-29 132.9 139 47.5
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 3.8e-29 132.9 192 39.6
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 4.9e-29 132.5 183 42.6
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.9e-29 132.5 183 42.6
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 4.9e-29 132.5 188 38.8
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 8.4e-29 131.7 190 40.5
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 1.1e-28 131.3 151 47.0
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 1.1e-28 131.3 191 38.2
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 1.1e-28 131.3 195 39.5
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 1.4e-28 131.0 218 35.3
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.9e-28 130.6 197 40.6
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 2.4e-28 130.2 146 47.9
BraA09t38742Z Brassica rapa HOM05D000499 ORTHO05D002825 3.2e-28 129.8 110 64.5
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 4.2e-28 129.4 193 39.4
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 4.2e-28 129.4 197 39.1
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 5.4e-28 129.0 139 46.8
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 7.1e-28 128.6 190 36.8
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 7.1e-28 128.6 199 39.2
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 1.6e-27 127.5 184 42.4
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 2.1e-27 127.1 143 44.8
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 2.1e-27 127.1 122 51.6
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 3.5e-27 126.3 183 36.6
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 3.5e-27 126.3 183 36.6
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 6.0e-27 125.6 126 47.6
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 7.8e-27 125.2 185 38.4
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 7.8e-27 125.2 177 38.4
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.0e-26 124.8 160 40.6
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.3e-26 124.4 151 39.7
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 2.3e-26 123.6 128 45.3
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 3.9e-26 122.9 153 39.9
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 3.9e-26 122.9 139 41.0
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 5.1e-26 122.5 176 39.8
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 5.1e-26 122.5 141 43.3
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 6.6e-26 122.1 149 41.6
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 6.6e-26 122.1 193 37.8
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 8.7e-26 121.7 130 44.6
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 1.1e-25 121.3 144 39.6
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 1.5e-25 120.9 193 37.3
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 1.9e-25 120.6 144 39.6
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 1.9e-25 120.6 130 46.2
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 1.9e-25 120.6 192 36.5
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 1.9e-25 120.6 142 42.3
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 1.9e-25 120.6 136 42.6
BolC6t36282H Brassica oleracea HOM05D000499 ORTHO05D002825 2.5e-25 120.2 109 63.3
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 2.5e-25 120.2 159 40.9
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 3.3e-25 119.8 128 45.3
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 3.3e-25 119.8 159 40.9
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 5.6e-25 119.0 144 38.9
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 7.3e-25 118.6 137 43.8
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 9.6e-25 118.2 142 42.3
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 1.3e-24 117.9 163 39.9
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 1.6e-24 117.5 219 32.0
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 1.6e-24 117.5 152 42.1
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 1.6e-24 117.5 135 42.2
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 2.1e-24 117.1 189 35.4
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 2.1e-24 117.1 140 40.7
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 2.1e-24 117.1 152 40.8
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 2.8e-24 116.7 126 46.8
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 2.8e-24 116.7 148 42.6
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 4.8e-24 115.9 148 42.6
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 6.2e-24 115.5 159 40.9
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 6.2e-24 115.5 130 41.5
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 8.1e-24 115.2 136 40.4
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 1.1e-23 114.8 137 44.5
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 1.1e-23 114.8 153 43.1
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 1.4e-23 114.4 84 61.9
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 2.4e-23 113.6 84 61.9
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 2.4e-23 113.6 203 38.4
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 4.0e-23 112.8 127 40.2
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 6.9e-23 112.1 110 48.2
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 2.0e-22 110.5 112 47.3
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 3.4e-22 109.8 202 32.7
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 5.8e-22 109.0 154 40.3
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 3.8e-21 106.3 107 53.3
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 8.4e-21 105.1 151 39.7
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 7.1e-20 102.1 98 53.1
AT1G34550 Arabidopsis thaliana HOM05D000499 ORTHO05D002825 1.2e-19 101.3 109 56.0
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 2.1e-19 100.5 124 42.7
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 3.5e-19 99.8 128 43.8
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 4.6e-19 99.4 83 54.2
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 4.6e-19 99.4 181 31.5
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 7.9e-19 98.6 132 34.8
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 1.0e-18 98.2 225 30.7
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 3.9e-18 96.3 150 34.7
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 6.7e-18 95.5 146 34.9
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 1.5e-17 94.4 136 35.3
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 1.5e-17 94.4 128 40.6
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 1.9e-17 94.0 79 51.9
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 3.3e-17 93.2 149 38.3
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 3.3e-17 93.2 191 32.5
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 2.1e-16 90.5 87 44.8
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 3.6e-16 89.7 138 37.0
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 4.8e-16 89.4 193 35.2
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 2.4e-15 87.0 92 50.0
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 3.1e-15 86.7 88 51.1
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 4.0e-15 86.3 80 55.0
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 6.9e-15 85.5 79 53.2
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 6.9e-15 85.5 192 31.8
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 9.9e-14 81.6 93 36.6
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 1.1e-12 78.2 99 38.4
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.2e-12 76.6 82 48.8
A09p32070 Brassica napus HOM05D000499 ORTHO05D002825 9.3e-12 75.1 71 59.2
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 1.2e-11 74.7 144 34.0
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 2.1e-11 73.9 93 37.6
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 2.1e-11 73.9 71 47.9
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 4.6e-11 72.8 88 43.2
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 1.3e-10 71.2 77 44.2
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 4.8e-08 62.8 73 42.5
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 4.8e-08 62.8 56 48.2
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 6.2e-08 62.4 81 38.3
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.1e-07 60.1 106 39.6
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 3.1e-07 60.1 96 29.2
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 4.0e-07 59.7 118 26.3
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.5e-06 57.8 39 66.7
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 2.6e-06 57.0 96 28.1
Aa31LG2G13200 Aethionema arabicum HOM05D000404 ORTHO05D001765 5.8e-06 55.8 64 48.4


User provided reference genes

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