Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 1.8e-142 509.2 256 100.0
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 3.5e-93 345.5 199 85.9
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 7.0e-86 321.2 199 80.4
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 1.6e-85 320.1 202 82.2
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 7.8e-85 317.8 199 82.9
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 5.0e-84 315.1 199 82.4
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 1.2e-82 310.5 205 77.6
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 4.0e-81 305.4 199 79.4
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 1.2e-80 303.9 196 80.1
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 1.5e-80 303.5 213 73.2
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 2.2e-79 299.7 200 79.5
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 3.7e-79 298.9 196 79.6
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 4.1e-78 295.4 197 78.2
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 3.9e-76 288.9 202 72.8
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 4.3e-75 285.4 200 73.5
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 8.3e-71 271.2 181 78.5
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 2.4e-70 269.6 191 75.9
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 4.3e-67 258.8 175 77.7
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 4.0e-65 252.3 202 65.3
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.3e-63 247.3 202 63.4
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 4.9e-47 192.2 209 50.2
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 8.4e-47 191.4 209 52.6
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 1.1e-46 191.0 208 51.4
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 1.2e-45 187.6 208 51.9
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 1.6e-45 187.2 209 51.7
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 4.6e-45 185.7 209 51.2
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 6.0e-45 185.3 202 50.0
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 6.0e-45 185.3 209 49.8
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 6.0e-45 185.3 218 49.5
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 1.7e-44 183.7 209 48.8
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 1.7e-44 183.7 210 50.0
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 1.7e-44 183.7 210 48.1
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 1.7e-44 183.7 210 48.1
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.3e-44 183.3 208 49.0
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 2.3e-44 183.3 206 50.5
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.9e-44 182.6 209 48.8
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 3.9e-44 182.6 209 49.8
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 6.6e-44 181.8 208 50.5
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 8.7e-44 181.4 209 50.7
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 8.7e-44 181.4 209 49.8
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 8.7e-44 181.4 212 48.6
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 1.1e-43 181.0 210 47.6
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 1.5e-43 180.6 209 51.2
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 1.9e-43 180.3 208 50.5
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 1.9e-43 180.3 209 50.2
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 2.5e-43 179.9 211 50.2
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 3.3e-43 179.5 214 50.0
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 3.3e-43 179.5 211 49.3
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 4.3e-43 179.1 209 51.7
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 7.3e-43 178.3 210 50.0
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 1.3e-42 177.6 210 45.7
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 1.3e-42 177.6 211 49.3
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 1.6e-42 177.2 209 49.3
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 2.1e-42 176.8 208 47.6
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 2.1e-42 176.8 210 45.7
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 2.1e-42 176.8 214 49.1
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 3.6e-42 176.0 208 50.0
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 4.8e-42 175.6 209 50.2
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 6.2e-42 175.3 213 48.8
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 1.1e-41 174.5 212 50.0
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 1.1e-41 174.5 208 48.1
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 1.4e-41 174.1 212 48.6
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.8e-41 173.7 204 48.0
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.8e-41 173.7 210 49.5
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.8e-41 173.7 210 49.0
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 1.8e-41 173.7 210 48.6
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 5.3e-41 172.2 228 42.5
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 6.9e-41 171.8 216 47.7
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 1.2e-40 171.0 208 50.0
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 1.2e-40 171.0 208 47.1
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 2.0e-40 170.2 208 47.1
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 2.0e-40 170.2 216 47.2
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 3.4e-40 169.5 210 44.3
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 3.4e-40 169.5 208 47.1
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 4.5e-40 169.1 208 47.1
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 5.8e-40 168.7 216 47.2
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 9.9e-40 167.9 208 45.7
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 2.2e-39 166.8 202 49.0
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.9e-38 163.7 212 45.8
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 2.4e-38 163.3 210 47.1
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 3.2e-38 162.9 184 50.0
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 3.2e-38 162.9 212 46.7
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 3.2e-38 162.9 211 49.8
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 4.2e-38 162.5 210 46.7
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 5.4e-38 162.2 211 47.9
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 5.4e-38 162.2 209 46.9
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 4.6e-37 159.1 205 45.9
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 6.0e-37 158.7 219 44.7
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 7.9e-37 158.3 195 47.2
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 1.0e-36 157.9 202 46.5
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 1.0e-36 157.9 203 48.8
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 1.8e-36 157.1 187 50.8
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 2.3e-36 156.8 184 50.5
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 5.1e-36 155.6 210 44.8
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 8.7e-36 154.8 205 45.4
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 3.3e-35 152.9 184 46.7
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 7.4e-35 151.8 212 42.9
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 2.1e-34 150.2 200 44.5
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 2.8e-34 149.8 216 44.9
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 2.8e-34 149.8 180 48.9
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 8.1e-34 148.3 185 49.7
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.1e-33 147.9 206 42.7
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 1.1e-33 147.9 195 45.1
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 1.4e-33 147.5 213 42.7
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 1.8e-33 147.1 211 43.1
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 2.4e-33 146.7 212 42.5
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 3.1e-33 146.4 226 42.5
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 4.0e-33 146.0 207 44.0
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 5.3e-33 145.6 221 44.8
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 6.9e-33 145.2 216 43.5
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 9.0e-33 144.8 219 43.4
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 9.0e-33 144.8 188 46.8
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 9.0e-33 144.8 213 45.5
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 9.0e-33 144.8 185 47.0
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 1.2e-32 144.4 211 44.1
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 1.5e-32 144.1 212 43.4
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 1.5e-32 144.1 193 46.1
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 1.5e-32 144.1 192 44.8
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 7.6e-32 141.7 191 44.5
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 9.9e-32 141.4 228 42.5
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 1.3e-31 141.0 219 42.9
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 2.2e-31 140.2 206 40.3
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 2.9e-31 139.8 187 44.9
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 3.8e-31 139.4 209 41.6
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 1.1e-30 137.9 186 48.4
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.1e-30 137.9 183 46.4
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 1.9e-30 137.1 216 44.4
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 4.2e-30 136.0 202 43.6
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 4.2e-30 136.0 229 40.2
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 9.3e-30 134.8 189 47.6
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 1.2e-29 134.4 211 45.0
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 1.2e-29 134.4 175 46.9
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 1.2e-29 134.4 189 43.9
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.6e-29 134.0 183 45.4
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 3.5e-29 132.9 207 44.0
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 4.6e-29 132.5 202 43.1
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 6.0e-29 132.1 188 50.0
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 6.0e-29 132.1 209 38.8
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 1.3e-28 131.0 178 44.4
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 1.8e-28 130.6 183 41.5
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.8e-28 130.6 185 44.9
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 1.8e-28 130.6 186 47.3
Lsat_1_v5_gn_6_101640 Lactuca sativa HOM05D003947 ORTHO05D004614 3.9e-28 129.4 208 40.4
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 5.1e-28 129.0 199 43.2
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 8.7e-28 128.3 190 43.7
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 4.8e-26 122.5 189 43.4
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 1.1e-25 121.3 186 40.9
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 4.0e-25 119.4 208 39.9
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 9.0e-25 118.2 206 42.2
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 9.0e-25 118.2 170 38.2
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 1.5e-24 117.5 182 43.4
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 5.8e-24 115.5 216 38.0
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 5.8e-24 115.5 208 40.4
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 7.6e-24 115.2 225 39.1
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 7.6e-24 115.2 201 39.8
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 1.7e-23 114.0 206 40.8
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 4.6e-21 105.9 234 35.9
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 6.0e-21 105.5 151 45.7
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 1.9e-19 100.5 231 36.4
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 5.7e-19 99.0 220 33.6
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 8.2e-18 95.1 192 35.9
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 1.1e-17 94.7 175 37.1
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 2.4e-17 93.6 165 40.0
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 3.1e-17 93.2 154 37.7
Sed0022469 Sechium edule HOM05D003947 ORTHO05D004614 4.1e-17 92.8 161 40.4
Os05g0591450 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 9.0e-17 91.7 107 49.5
A09p41960 Brassica napus HOM05D003947 ORTHO05D004614 2.9e-15 86.7 215 33.5
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 5.0e-15 85.9 172 37.2
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 6.5e-15 85.5 174 36.8
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 4.2e-14 82.8 171 36.3
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 2.1e-13 80.5 200 37.0
SalBow7G0026 Salvia bowleyana HOM05D003947 ORTHO05D004614 2.8e-10 70.1 69 53.6
Gohir.A09G202700 Gossypium hirsutum HOM05D009286 ORTHO05D011130 3.4e-08 63.2 76 50.0
Gohir.D09G196800 Gossypium hirsutum HOM05D009286 ORTHO05D011130 3.4e-08 63.2 76 50.0
Gorai.006G220200 Gossypium raimondii HOM05D009286 ORTHO05D011130 3.4e-08 63.2 76 50.0
HPP92_002804 Vanilla planifolia HOM05D003947 ORTHO05D004614 5.9e-08 62.4 147 32.7
ClCG03G014560 Citrullus lanatus HOM05D007392 ORTHO05D009181 8.5e-07 58.5 116 34.5
CsaV3_1G041630 Cucumis sativus L. HOM05D007392 ORTHO05D009181 5.5e-06 55.8 80 38.8
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 7.2e-06 55.5 132 29.5
MELO3C015574.2 Cucumis melo HOM05D007392 ORTHO05D009181 7.2e-06 55.5 80 38.8
Duzib268G0451 Durio zibethinus HOM05D009286 ORTHO05D011130 9.4e-06 55.1 75 48.0
Duzib268G0949 Durio zibethinus HOM05D009286 ORTHO05D011130 9.4e-06 55.1 75 48.0


User provided reference genes

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