Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 1.0e-207 726.5 367 100.0
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 2.2e-186 655.6 372 87.9
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 2.9e-186 655.2 371 88.1
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 5.0e-186 654.4 371 88.4
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 8.5e-186 653.7 370 87.8
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 7.7e-179 630.6 370 87.0
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 2.3e-178 629.0 366 87.2
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 4.0e-175 618.2 373 84.7
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 1.3e-173 613.2 370 85.1
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 2.2e-173 612.5 370 85.4
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 2.2e-173 612.5 370 85.4
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 3.7e-173 611.7 370 84.9
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 8.3e-173 610.5 370 84.3
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 2.0e-171 605.9 369 84.0
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 5.2e-167 591.3 375 80.3
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 1.1e-164 583.6 417 73.6
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 6.2e-160 567.8 370 76.5
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 1.5e-158 563.1 317 91.5
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 2.4e-148 529.3 373 69.2
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 1.6e-139 500.0 340 72.6
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 5.1e-138 495.0 378 66.1
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 6.6e-138 494.6 353 69.1
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 6.6e-138 494.6 346 70.5
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 6.6e-138 494.6 369 67.2
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 8.7e-138 494.2 378 66.1
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 9.6e-137 490.7 336 71.1
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 2.1e-136 489.6 351 69.5
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 6.2e-136 488.0 386 64.5
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 8.1e-136 487.6 341 71.0
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 3.1e-135 485.7 334 71.0
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 4.0e-135 485.3 353 68.0
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 4.0e-135 485.3 351 68.7
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 6.9e-135 484.6 335 71.6
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 2.0e-134 483.0 360 66.7
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 5.8e-134 481.5 355 67.0
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 5.8e-134 481.5 378 65.6
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 7.6e-134 481.1 378 65.9
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 9.9e-134 480.7 379 64.6
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 1.3e-133 480.3 325 71.7
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 1.7e-133 479.9 333 71.8
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.7e-133 479.9 331 70.1
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 1.7e-133 479.9 370 65.1
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 2.2e-133 479.6 328 70.4
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 3.8e-133 478.8 375 64.0
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 3.8e-133 478.8 325 71.7
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 6.4e-133 478.0 321 71.3
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.4e-133 478.0 381 64.8
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 8.4e-133 477.6 344 68.0
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 1.1e-132 477.2 322 71.1
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 3.2e-132 475.7 347 68.6
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 4.2e-132 475.3 331 69.8
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 9.3e-132 474.2 336 68.5
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 9.3e-132 474.2 329 69.6
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 9.3e-132 474.2 332 69.6
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 1.2e-131 473.8 358 65.6
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 2.1e-131 473.0 345 68.1
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.7e-131 472.6 391 63.7
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 2.7e-131 472.6 393 62.3
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 3.5e-131 472.2 329 71.1
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 4.6e-131 471.9 323 70.9
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 3.0e-130 469.2 326 69.3
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 3.9e-130 468.8 334 68.6
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 3.9e-130 468.8 356 66.3
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 5.1e-130 468.4 396 61.4
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 1.5e-129 466.8 339 68.1
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 1.5e-129 466.8 393 61.6
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 2.5e-129 466.1 339 67.3
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 9.6e-129 464.2 330 68.2
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 9.6e-129 464.2 336 67.9
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 2.8e-128 462.6 361 65.1
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 2.8e-128 462.6 361 65.1
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 6.2e-128 461.5 378 63.0
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 4.5e-126 455.3 384 60.4
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 9.9e-126 454.1 323 67.8
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 3.8e-125 452.2 347 64.8
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 4.9e-125 451.8 341 66.6
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 1.4e-124 450.3 379 61.2
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 1.6e-123 446.8 334 65.9
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 1.6e-123 446.8 362 61.9
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 2.1e-123 446.4 278 76.6
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 2.7e-123 446.0 332 66.6
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 7.9e-123 444.5 343 65.0
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 5.1e-122 441.8 334 67.7
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 5.1e-122 441.8 346 62.7
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 5.1e-122 441.8 346 62.7
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 2.1e-120 436.4 333 65.5
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 3.7e-120 435.6 346 61.8
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 4.0e-119 432.2 356 62.1
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 4.0e-119 432.2 314 65.9
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 1.5e-118 430.3 383 58.7
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.0e-117 427.6 324 66.0
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 3.8e-117 425.6 510 48.0
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 4.9e-117 425.2 462 50.4
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 3.5e-115 419.1 371 59.3
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 5.1e-114 415.2 403 56.6
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 5.1e-114 415.2 330 63.9
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 1.5e-113 413.7 342 61.4
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 1.1e-111 407.5 327 63.0
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 4.1e-111 405.6 338 59.2
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 6.9e-111 404.8 373 57.1
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 4.5e-110 402.1 328 62.8
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 5.1e-106 388.7 343 59.2
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 1.1e-105 387.5 271 67.2
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.6e-104 383.6 298 64.4
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 9.1e-103 377.9 263 70.0
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 5.9e-102 375.2 306 63.4
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 8.8e-98 361.3 258 66.7
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 1.1e-97 360.9 298 62.1
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 4.1e-95 352.4 219 76.3
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 4.5e-94 349.0 216 75.9
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 4.2e-92 342.4 216 73.6
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 1.2e-91 340.9 301 60.1
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 8.2e-88 328.2 231 72.3
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 1.9e-84 317.0 218 71.6
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 1.4e-82 310.8 219 70.3
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 5.2e-82 308.9 546 37.0
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.7e-80 303.9 298 53.0
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.7e-78 296.6 216 67.1
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 2.7e-78 296.6 215 66.0
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 4.5e-78 295.8 198 69.2
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 1.4e-74 284.3 242 59.5
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 2.7e-70 270.0 328 48.2
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 5.7e-65 252.3 212 61.8
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 3.3e-44 183.3 254 40.6
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.4e-39 167.9 246 37.0
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 6.0e-30 136.0 286 35.3
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 3.3e-28 130.2 123 57.7
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 2.8e-27 127.1 88 76.1
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 1.5e-25 121.3 100 65.0
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 3.4e-25 120.2 103 62.1
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 3.8e-24 116.7 177 39.5
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 8.4e-24 115.5 188 36.2
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 7.1e-23 112.5 108 53.7
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 7.1e-23 112.5 102 56.9
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.2e-22 111.7 64 79.7
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.0e-22 109.4 64 79.7
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.0e-22 109.4 64 79.7
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.9e-21 106.7 64 75.0
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.9e-21 106.7 64 75.0
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.9e-21 106.7 64 75.0
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 7.3e-20 102.4 64 71.9
CARHR054100 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.6e-14 84.7 57 73.7
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 1.0e-13 82.0 170 35.9
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 1.5e-12 78.2 73 57.5
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 7.4e-12 75.9 166 31.3
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 9.6e-12 75.5 167 31.1
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 1.2e-09 68.6 170 30.0
Cre26.g756847 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D028745 4.9e-08 63.2 195 30.3


User provided reference genes

Program Settings