Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.0e-108 396.7 204 100.0
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 2.6e-91 339.0 204 83.8
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.5e-86 322.4 204 80.4
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 2.3e-79 299.3 204 77.0
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 3.0e-79 298.9 204 76.5
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 3.0e-79 298.9 204 76.5
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 3.9e-79 298.5 204 76.5
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 2.1e-77 292.7 199 76.9
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 2.1e-77 292.7 199 76.9
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 2.1e-77 292.7 199 76.9
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.7e-74 283.1 206 72.8
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.4e-73 279.3 208 71.6
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 3.6e-69 265.4 204 69.6
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 3.6e-69 265.4 204 69.6
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 1.1e-68 263.8 209 68.9
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 3.1e-60 235.7 207 62.8
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.1e-54 217.2 219 60.7
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.3e-53 213.8 209 59.8
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 2.1e-53 213.0 204 62.7
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 9.3e-49 197.6 208 57.2
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 4.3e-46 188.7 210 54.8
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.3e-45 187.2 213 54.9
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 4.8e-45 185.3 208 53.4
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 2.4e-44 183.0 207 53.6
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 8.5e-42 174.5 214 52.8
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 8.5e-42 174.5 205 51.2
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 2.5e-41 172.9 204 51.0
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 2.7e-40 169.5 208 50.5
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 2.7e-40 169.5 208 50.5
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 7.9e-40 167.9 204 49.0
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 4.6e-32 142.1 232 42.7
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 2.6e-30 136.3 232 40.5
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 5.7e-30 135.2 233 40.8
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 2.2e-29 133.3 232 39.7
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 8.2e-29 131.3 229 42.4
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 8.2e-29 131.3 232 38.4
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 2.4e-28 129.8 240 40.4
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.5e-27 125.6 230 40.4
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 1.0e-26 124.4 215 40.5
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.7e-26 123.6 233 36.9
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.2e-26 123.2 229 39.3
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.2e-26 123.2 229 39.3
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.8e-26 122.5 237 38.8
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.8e-26 122.5 237 38.8
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 3.8e-26 122.5 245 40.0
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 3.8e-26 122.5 245 40.0
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 8.5e-26 121.3 236 38.1
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 1.4e-25 120.6 234 37.6
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 4.2e-25 119.0 231 40.7
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 1.2e-24 117.5 224 42.4
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 1.2e-24 117.5 254 36.2
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 1.6e-24 117.1 237 38.4
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 2.7e-24 116.3 235 36.6
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 3.6e-24 115.9 231 35.9
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 4.7e-24 115.5 228 37.7
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 4.7e-24 115.5 226 36.3
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.7e-24 115.5 231 39.0
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 7.9e-24 114.8 217 39.2
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.0e-23 114.4 233 35.2
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 1.8e-23 113.6 234 35.9
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 3.9e-23 112.5 239 36.8
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 5.2e-23 112.1 239 37.2
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 8.8e-23 111.3 233 33.5
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 8.8e-23 111.3 231 38.5
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 2.0e-22 110.2 203 37.4
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 2.0e-22 110.2 240 37.1
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 2.6e-22 109.8 246 35.0
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 3.3e-22 109.4 245 38.4
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 4.4e-22 109.0 225 35.1
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 4.4e-22 109.0 242 36.8
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 4.4e-22 109.0 234 35.9
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 7.4e-22 108.2 245 35.9
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 1.3e-21 107.5 230 35.2
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.2e-21 106.7 245 35.5
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 6.3e-21 105.1 238 37.4
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 6.3e-21 105.1 239 36.0
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 1.4e-20 104.0 245 35.1
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.4e-20 104.0 245 35.1
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 1.4e-20 104.0 228 34.2
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 3.1e-20 102.8 238 39.1
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 4.1e-20 102.4 249 35.3
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.6e-19 100.5 253 33.6
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.0e-19 100.1 245 33.1
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.5e-19 99.4 245 31.8
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 4.5e-19 99.0 223 36.8
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 5.9e-19 98.6 206 35.9
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 5.9e-19 98.6 239 34.3
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.0e-18 97.8 220 35.5
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 1.0e-18 97.8 231 31.6
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 1.0e-18 97.8 246 33.7
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.3e-18 97.4 228 36.4
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 1.7e-18 97.1 205 37.1
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 5.0e-18 95.5 231 33.3
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 8.5e-18 94.7 250 31.6
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 1.5e-17 94.0 241 35.3
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 1.5e-17 94.0 237 32.1
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.9e-17 93.6 226 33.2
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 2.5e-17 93.2 250 31.2
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 4.2e-17 92.4 223 34.5
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 7.2e-17 91.7 233 32.2
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.2e-16 90.9 226 29.6
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 1.6e-16 90.5 254 31.9
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 1.6e-16 90.5 252 34.5
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.6e-16 90.5 211 33.6
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.1e-16 90.1 244 31.6
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 1.8e-15 87.0 214 33.2
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 4.0e-15 85.9 213 35.2
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 5.2e-15 85.5 230 33.9
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 5.2e-15 85.5 211 36.0
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.2e-14 84.3 253 30.4
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 2.0e-14 83.6 213 32.4
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 2.6e-14 83.2 236 31.8
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 2.6e-14 83.2 240 28.8
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 3.3e-14 82.8 236 30.1
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 7.5e-14 81.6 231 34.2
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 1.3e-13 80.9 224 33.5
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.2e-13 80.1 252 31.7
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.8e-13 79.7 138 37.0
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.8e-12 77.0 214 31.3
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 7.0e-12 75.1 192 34.9
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.2e-11 74.3 221 32.1
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 1.6e-11 73.9 251 27.1
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 1.0e-10 71.2 210 31.9
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 3.8e-10 69.3 195 34.4
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 6.5e-10 68.6 240 28.8
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 2.5e-09 66.6 272 30.9
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 3.2e-09 66.2 196 32.7
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 3.2e-09 66.2 209 29.7
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 5.5e-09 65.5 250 28.8
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 7.2e-09 65.1 175 34.9
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 1.2e-08 64.3 239 28.5
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 2.7e-08 63.2 115 39.1
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 4.7e-08 62.4 185 31.9
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 4.7e-08 62.4 205 32.2
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.4e-07 60.8 80 46.2
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 2.3e-07 60.1 190 32.6
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 3.4e-06 56.2 260 24.6
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 9.8e-06 54.7 97 39.2


User provided reference genes

Program Settings