Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g28080 Schrenkiella parvula HOM05D008703 ORTHO05D006961 4.2e-37 157.5 80 100.0
A09p33470 Brassica napus HOM05D008703 ORTHO05D006961 5.1e-27 124.0 82 80.5
BraA09t38889Z Brassica rapa HOM05D008703 ORTHO05D006961 5.1e-27 124.0 82 80.5
Thhalv10009742m.g Eutrema salsugineum HOM05D008703 ORTHO05D006961 5.1e-27 124.0 84 81.0
A05p24420 Brassica napus HOM05D008703 ORTHO05D006961 9.1e-24 113.2 80 77.5
BolC5t32543H Brassica oleracea HOM05D008703 ORTHO05D006961 9.1e-24 113.2 80 77.5
BraA05t21333Z Brassica rapa HOM05D008703 ORTHO05D006961 9.1e-24 113.2 80 77.5
BcaC05g27814 Brassica carinata HOM05D008703 ORTHO05D006961 4.5e-23 110.9 80 76.2
C05p38160 Brassica napus HOM05D008703 ORTHO05D006961 4.5e-23 110.9 80 76.2
AT1G32928 Arabidopsis thaliana HOM05D008703 ORTHO05D006961 1.0e-22 109.8 86 76.7
AL1G47210 Arabidopsis lyrata HOM05D008703 ORTHO05D006961 1.3e-22 109.4 84 76.2
CARHR032250 Cardamine hirsuta HOM05D008703 ORTHO05D006961 1.7e-22 109.0 82 75.6
BcaC05g27316 Brassica carinata HOM05D008703 ORTHO05D006961 8.5e-22 106.7 84 71.4
BolC5t31969H Brassica oleracea HOM05D008703 ORTHO05D006961 8.5e-22 106.7 84 71.4
Thhalv10009230m.g Eutrema salsugineum HOM05D008703 ORTHO05D006961 1.2e-20 102.8 85 70.6
Carub.0001s3124 Capsella rubella HOM05D008703 ORTHO05D006961 7.9e-20 100.1 84 71.4
Aa31LG6G7520 Aethionema arabicum HOM05D008703 ORTHO05D006961 5.1e-19 97.4 83 66.3
THA.LOC104815392 Tarenaya hassleriana HOM05D008703 ORTHO05D006961 1.1e-16 89.7 80 58.8
Aa31LG6G7510 Aethionema arabicum HOM05D008703 ORTHO05D006961 9.4e-13 76.6 84 54.8
AT1G32920 Arabidopsis thaliana HOM05D008703 ORTHO05D006961 1.6e-12 75.9 80 51.2
A08p09220 Brassica napus HOM05D008703 ORTHO05D006961 1.6e-12 75.9 85 54.1
BraA08t32922Z Brassica rapa HOM05D008703 ORTHO05D006961 1.6e-12 75.9 85 54.1
CARHR032240 Cardamine hirsuta HOM05D008703 ORTHO05D006961 2.7e-12 75.1 80 53.8
BcaC07g37617 Brassica carinata HOM05D008703 ORTHO05D006961 4.7e-12 74.3 85 52.9
BolC8t47976H Brassica oleracea HOM05D008703 ORTHO05D006961 4.7e-12 74.3 85 52.9
AL1G47200 Arabidopsis lyrata HOM05D008703 ORTHO05D006961 1.0e-11 73.2 83 51.8
BcaB04g17983 Brassica carinata HOM05D008703 ORTHO05D006961 2.3e-11 72.0 85 51.8
BcaC07g37618 Brassica carinata HOM05D008703 ORTHO05D006961 4.0e-11 71.2 85 51.8
A09p33480 Brassica napus HOM05D008703 ORTHO05D006961 8.8e-11 70.1 83 51.8
BraA09t38890Z Brassica rapa HOM05D008703 ORTHO05D006961 8.8e-11 70.1 83 51.8
BcaC05g27315 Brassica carinata HOM05D008703 ORTHO05D006961 2.0e-10 68.9 85 50.6
C05p32370 Brassica napus HOM05D008703 ORTHO05D006961 2.6e-10 68.6 85 50.6
BolC5t31968H Brassica oleracea HOM05D008703 ORTHO05D006961 2.6e-10 68.6 85 50.6
Thhalv10009241m.g Eutrema salsugineum HOM05D008703 ORTHO05D006961 2.6e-10 68.6 83 49.4
CARHR256120 Cardamine hirsuta HOM05D008703 ORTHO05D006961 5.7e-10 67.4 79 46.8
Sp6g06920 Schrenkiella parvula HOM05D008703 ORTHO05D006961 2.2e-09 65.5 77 49.4
AL6G44550 Arabidopsis lyrata HOM05D008703 ORTHO05D006961 6.3e-09 63.9 80 48.8
FAN04G2016 Fragaria x ananassa HOM05D008613 ORTHO05D006961 6.3e-09 63.9 82 40.2
FAN08G0050 Fragaria x ananassa HOM05D008613 ORTHO05D006961 6.3e-09 63.9 82 40.2
FvH4_5g10560 Fragaria vesca HOM05D008613 ORTHO05D006961 1.1e-08 63.2 82 40.2
FAN18G1327 Fragaria x ananassa HOM05D008613 ORTHO05D006961 1.1e-08 63.2 82 40.2
Thhalv10029203m.g Eutrema salsugineum HOM05D008703 ORTHO05D006961 1.8e-08 62.4 81 48.1
Sabra16G0303600 Salix brachista HOM05D008613 ORTHO05D006961 1.8e-08 62.4 88 40.9
Sabra16G0303800 Salix brachista HOM05D008613 ORTHO05D006961 1.8e-08 62.4 88 40.9
Aa31LG9G11460 Aethionema arabicum HOM05D008703 ORTHO05D006961 2.4e-08 62.0 80 42.5
Potri.001G449800 Populus trichocarpa HOM05D008613 ORTHO05D006961 3.1e-08 61.6 93 40.9
Potri.001G449900 Populus trichocarpa HOM05D008613 ORTHO05D006961 3.1e-08 61.6 93 40.9
Potri.001G450000 Populus trichocarpa HOM05D008613 ORTHO05D006961 4.1e-08 61.2 93 40.9
Sabra16G0303700 Salix brachista HOM05D008613 ORTHO05D006961 4.1e-08 61.2 88 40.9
Sed0004803 Sechium edule HOM05D018156 ORTHO05D006961 5.3e-08 60.8 83 44.6
Sed0012511 Sechium edule HOM05D018156 ORTHO05D006961 5.3e-08 60.8 83 45.8
Prupe.5G133100 Prunus persica HOM05D008613 ORTHO05D006961 7.0e-08 60.5 88 39.8
Sabra16G0303500 Salix brachista HOM05D008613 ORTHO05D006961 7.0e-08 60.5 88 39.8
Duzib205G1760 Durio zibethinus HOM05D008613 ORTHO05D006961 9.1e-08 60.1 82 42.7
Sp6g06940 Schrenkiella parvula HOM05D008703 ORTHO05D006961 1.6e-07 59.3 75 46.7
Nn3g18877 Nelumbo nucifera HOM05D031625 ORTHO05D006961 2.0e-07 58.9 87 37.9
Nn3g18879 Nelumbo nucifera HOM05D031625 ORTHO05D006961 2.0e-07 58.9 87 37.9
QL02p027286 Quercus lobata HOM05D008613 ORTHO05D006961 2.7e-07 58.5 101 38.6
Aa31LG9G11510 Aethionema arabicum HOM05D008703 ORTHO05D006961 3.5e-07 58.2 80 40.0
Carub.0001s3123 Capsella rubella HOM05D008703 ORTHO05D006961 3.5e-07 58.2 90 41.1
TWI15G0337 Tripterygium wilfordii HOM05D008613 ORTHO05D006961 4.5e-07 57.8 83 42.2
CSS0022315 Camellia sinensis var. sinensis HOM05D008613 ORTHO05D006961 5.9e-07 57.4 80 38.8
ClCG01G001400 Citrullus lanatus HOM05D018156 ORTHO05D006961 5.9e-07 57.4 81 43.2
Nitab4.5_0000319g0150 Nicotiana tabacum HOM05D008837 ORTHO05D006961 5.9e-07 57.4 96 38.5
Manes.05G197800 Manihot esculenta HOM05D008837 ORTHO05D011237 7.7e-07 57.0 83 38.6
Thecc.03G217500 Theobroma cacao HOM05D008613 ORTHO05D006961 1.0e-06 56.6 83 39.8
Gohir.A02G099100 Gossypium hirsutum HOM05D008613 ORTHO05D006961 1.3e-06 56.2 86 40.7
Gohir.D03G084800 Gossypium hirsutum HOM05D008613 ORTHO05D006961 1.3e-06 56.2 86 40.7
RcHm_v2.0_Chr7g0187591 Rosa chinensis HOM05D008613 ORTHO05D006961 1.3e-06 56.2 83 38.6
Sabra16G0303900 Salix brachista HOM05D008613 ORTHO05D006961 1.3e-06 56.2 94 36.2
Atru.chr12.2412 Acer truncatum HOM05D008837 ORTHO05D011237 1.7e-06 55.8 80 41.2
Gohir.D08G121900 Gossypium hirsutum HOM05D008613 ORTHO05D006961 1.7e-06 55.8 80 40.0
Gorai.003G077900 Gossypium raimondii HOM05D008613 ORTHO05D006961 1.7e-06 55.8 86 39.5
Sopen03g022050 Solanum pennellii HOM05D008837 ORTHO05D006961 1.7e-06 55.8 83 42.2
Atru.chr9.1866 Acer truncatum HOM05D008613 ORTHO05D006961 2.2e-06 55.5 83 39.8
Aa31LG9G11540 Aethionema arabicum HOM05D008703 ORTHO05D006961 2.9e-06 55.1 80 38.8
Ah.07g204750 Amaranthus hybridus HOM05D011561 ORTHO05D011237 2.9e-06 55.1 84 44.0
Gohir.A09G186700 Gossypium hirsutum HOM05D018669 ORTHO05D011237 2.9e-06 55.1 87 41.4
Manes.01G055100 Manihot esculenta HOM05D008613 ORTHO05D006961 2.9e-06 55.1 82 41.5
Solyc03g081330.1 Solanum lycopersicum HOM05D008837 ORTHO05D006961 2.9e-06 55.1 85 42.4
EL10Ac3g05185 Beta vulgaris HOM05D008837 ORTHO05D006961 3.8e-06 54.7 93 40.9
Oeu023687.1 Olea europaea HOM05D008613 ORTHO05D006961 3.8e-06 54.7 89 37.1
Sabra15G0003300 Salix brachista HOM05D008837 ORTHO05D006961 3.8e-06 54.7 89 37.1
Sed0021198 Sechium edule HOM05D018156 ORTHO05D006961 3.8e-06 54.7 83 47.0
Eucgr.D01659 Eucalyptus grandis HOM05D008613 ORTHO05D006961 5.0e-06 54.3 94 39.4
Gohir.A08G109100 Gossypium hirsutum HOM05D008613 ORTHO05D006961 5.0e-06 54.3 83 42.2
Gorai.004G128500 Gossypium raimondii HOM05D008613 ORTHO05D006961 5.0e-06 54.3 81 42.0
Ciclev10023060m.g Citrus clementina HOM05D008837 ORTHO05D006961 6.5e-06 53.9 90 38.9
Manes.01G055000 Manihot esculenta HOM05D008613 ORTHO05D006961 6.5e-06 53.9 77 37.7
Oeu023688.1 Olea europaea HOM05D008613 ORTHO05D006961 6.5e-06 53.9 82 37.8


User provided reference genes

Program Settings