Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 2.1e-152 542.3 282 100.0
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 1.7e-141 506.1 282 92.2
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 5.4e-140 501.1 281 91.8
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 3.5e-139 498.4 283 90.8
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 4.8e-136 488.0 283 89.8
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 6.9e-135 484.2 282 87.6
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 2.6e-134 482.3 283 89.4
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 2.6e-134 482.3 283 89.4
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 2.6e-134 482.3 283 89.4
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 3.4e-134 481.9 283 89.8
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 1.3e-133 479.9 283 87.3
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 1.3e-133 479.9 283 87.3
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 2.2e-133 479.2 284 89.1
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 4.9e-133 478.0 282 87.9
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 6.5e-133 477.6 286 88.8
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 9.0e-127 457.2 281 83.3
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 2.5e-124 449.1 289 82.0
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 2.5e-124 449.1 289 82.0
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.5e-100 370.2 286 66.8
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 3.2e-100 369.0 284 70.4
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 8.0e-99 364.4 281 66.2
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 1.0e-98 364.0 286 65.7
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 1.0e-98 364.0 252 73.4
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 1.8e-98 363.2 282 68.4
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 1.8e-98 363.2 282 68.4
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 4.0e-98 362.1 282 69.1
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 4.0e-98 362.1 249 72.3
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 5.2e-98 361.7 286 68.2
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 2.0e-97 359.8 251 74.1
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 3.3e-97 359.0 284 67.3
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 3.3e-97 359.0 284 66.9
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.4e-97 358.6 250 73.6
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 4.4e-97 358.6 282 67.7
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 7.4e-97 357.8 268 69.8
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.3e-96 357.1 282 68.4
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 2.2e-96 356.3 256 69.5
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.8e-96 355.9 257 72.0
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 8.2e-96 354.4 202 89.1
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.4e-95 353.6 285 66.3
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.4e-95 353.6 285 66.0
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 1.4e-95 353.6 247 70.9
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 2.4e-95 352.8 252 72.6
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.4e-95 352.8 285 65.6
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 2.4e-95 352.8 230 75.7
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 3.1e-95 352.4 280 66.1
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.0e-95 351.3 252 72.2
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 9.1e-95 350.9 287 63.8
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 9.1e-95 350.9 279 67.4
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 1.2e-94 350.5 242 74.0
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.6e-94 350.1 228 78.1
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 2.0e-94 349.7 283 64.7
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 2.0e-94 349.7 230 75.7
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 2.0e-94 349.7 230 74.8
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 2.0e-94 349.7 250 72.4
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 2.6e-94 349.4 233 74.2
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 3.5e-94 349.0 239 73.6
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 3.5e-94 349.0 233 76.0
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 4.5e-94 348.6 287 65.5
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 7.7e-94 347.8 229 76.0
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 7.7e-94 347.8 237 75.1
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 1.0e-93 347.4 288 64.2
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 1.0e-93 347.4 276 66.7
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 1.3e-93 347.1 280 64.6
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.7e-93 346.7 229 75.5
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 1.7e-93 346.7 229 75.1
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 1.7e-93 346.7 279 66.7
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 2.2e-93 346.3 286 64.7
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 2.9e-93 345.9 247 72.5
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 3.8e-93 345.5 284 64.4
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 3.8e-93 345.5 237 73.4
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 8.5e-93 344.4 229 74.7
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.1e-92 344.0 251 70.1
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.1e-92 344.0 251 69.7
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 1.9e-92 343.2 279 65.9
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 3.2e-92 342.4 284 65.1
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 4.2e-92 342.0 284 63.0
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 5.5e-92 341.7 230 73.9
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 5.5e-92 341.7 247 70.9
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 9.4e-92 340.9 236 73.7
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 1.6e-91 340.1 279 66.3
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 2.1e-91 339.7 236 73.3
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.7e-91 339.3 237 71.7
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.7e-91 339.3 276 64.5
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 3.6e-91 339.0 231 73.2
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 3.6e-91 339.0 255 69.0
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 6.1e-91 338.2 229 73.4
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 1.0e-90 337.4 261 67.4
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 1.0e-90 337.4 283 65.0
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 5.2e-90 335.1 238 71.0
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 6.8e-90 334.7 230 72.2
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.5e-89 333.6 253 66.8
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 2.8e-88 329.3 265 66.4
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 4.8e-88 328.6 229 71.6
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.8e-88 328.6 262 65.3
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.8e-88 328.6 252 68.7
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 4.8e-88 328.6 224 73.7
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 6.3e-88 328.2 225 75.1
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 2.4e-87 326.2 236 69.9
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.1e-87 325.9 230 71.7
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 3.1e-87 325.9 259 68.3
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 5.9e-86 321.6 236 68.2
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.3e-85 320.5 287 62.7
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 2.2e-85 319.7 253 65.2
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 1.5e-84 317.0 255 64.7
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 9.4e-84 314.3 273 60.4
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 3.6e-83 312.4 280 61.8
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 1.4e-82 310.5 230 70.0
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.8e-82 310.1 230 70.0
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 9.8e-81 304.3 199 76.4
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 1.7e-80 303.5 251 62.2
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 3.1e-79 299.3 251 59.8
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.1e-79 298.9 246 62.6
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 5.4e-79 298.5 232 65.9
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 3.5e-78 295.8 282 59.2
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 1.3e-77 293.9 229 66.4
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 2.3e-77 293.1 232 65.5
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 5.0e-77 292.0 199 74.4
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 4.2e-76 288.9 200 71.5
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 2.8e-75 286.2 199 72.4
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 4.0e-74 282.3 199 73.9
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 1.5e-73 280.4 200 71.0
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 2.9e-72 276.2 228 64.9
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.4e-72 275.0 200 70.0
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 1.1e-71 274.2 239 61.1
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.4e-71 273.1 191 72.8
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 7.0e-71 271.6 237 61.6
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 9.2e-71 271.2 216 65.7
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 3.5e-70 269.2 187 72.2
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 5.6e-68 261.9 225 61.8
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 4.7e-67 258.8 235 58.7
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 4.1e-63 245.7 167 73.1
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 7.0e-63 245.0 228 56.6
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 1.7e-61 240.4 238 54.2
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.8e-58 230.3 185 66.5
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.2e-57 227.6 285 48.1
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.3e-53 214.2 192 60.9
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.9e-47 193.7 117 78.6
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 1.9e-47 193.7 146 64.4
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 6.0e-46 188.7 203 52.7
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 3.0e-45 186.4 156 63.5
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 4.9e-40 169.1 131 65.6
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 9.3e-39 164.9 131 65.6
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 8.7e-37 158.3 100 80.0
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 8.7e-37 158.3 100 80.0
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.3e-36 156.4 132 62.1
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.8e-35 153.3 158 55.1
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 6.9e-34 148.7 123 65.0
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 4.2e-31 139.4 130 56.9
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 8.7e-29 131.7 74 87.8
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.3e-28 129.8 74 86.5
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.3e-28 129.4 74 86.5
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 5.6e-28 129.0 74 86.5
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 7.4e-28 128.6 157 47.1
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.1e-27 127.1 74 83.8
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 2.4e-23 113.6 201 35.3
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 8.1e-19 98.6 70 68.6
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 1.2e-17 94.7 64 71.9
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 8.4e-16 88.6 90 53.3
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.1e-15 88.2 66 68.2
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 3.2e-15 86.7 63 69.8
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 5.5e-15 85.9 66 66.7
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 2.3e-13 80.5 44 88.6
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 2.5e-12 77.0 44 81.8
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 3.3e-12 76.6 64 64.1
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 6.3e-11 72.4 46 78.3
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 1.5e-09 67.8 61 59.0
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.5e-09 67.8 66 54.5
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 1.0e-08 65.1 37 75.7
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 1.0e-08 65.1 37 75.7
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.9e-08 63.5 252 25.8
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 4.6e-06 56.2 49 57.1


User provided reference genes

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