Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 0.0e+00 1328.2 681 100.0
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 0.0e+00 1275.4 682 96.3
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 0.0e+00 1271.9 682 96.0
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 0.0e+00 1270.8 682 95.9
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 0.0e+00 1268.4 682 95.7
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 0.0e+00 1268.4 682 95.7
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 0.0e+00 1261.5 681 95.0
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 0.0e+00 1257.3 681 94.6
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 0.0e+00 1255.4 681 94.4
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 0.0e+00 1252.3 681 94.0
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 0.0e+00 1251.9 682 94.4
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 0.0e+00 1250.3 682 94.6
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 0.0e+00 1208.7 681 91.0
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 0.0e+00 1143.6 684 84.9
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 2.0e-297 1025.4 691 76.4
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 2.2e-296 1021.9 691 76.3
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 6.5e-296 1020.4 691 76.4
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 1.6e-294 1015.8 694 74.8
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 2.1e-294 1015.4 695 75.8
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 4.6e-294 1014.2 692 76.0
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 4.6e-294 1014.2 694 74.8
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 5.1e-293 1010.7 695 75.8
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 8.7e-293 1010.0 691 75.0
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 1.3e-291 1006.1 691 74.7
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 1.1e-290 1003.0 700 74.6
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 2.4e-290 1001.9 696 75.1
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 3.8e-288 994.6 685 74.3
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 6.5e-288 993.8 690 74.9
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 1.4e-287 992.6 696 73.9
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 9.3e-287 989.9 696 74.3
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 2.7e-286 988.4 689 73.7
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 3.5e-286 988.0 735 71.6
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 4.6e-286 987.6 695 73.8
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 6.1e-286 987.3 689 74.7
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 7.9e-286 986.9 692 73.7
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 1.3e-285 986.1 697 73.3
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 1.3e-285 986.1 687 74.7
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 2.3e-285 985.3 690 74.6
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 5.1e-285 984.2 689 73.6
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 8.7e-285 983.4 692 73.3
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 8.7e-285 983.4 683 73.9
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 3.3e-284 981.5 692 72.7
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 3.3e-284 981.5 695 72.9
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 4.3e-284 981.1 685 74.7
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 5.7e-284 980.7 698 73.6
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 5.7e-284 980.7 735 70.6
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 5.7e-284 980.7 694 73.6
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 7.4e-284 980.3 695 73.5
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 9.7e-284 979.9 691 72.8
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 9.7e-284 979.9 693 72.9
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 4.8e-283 977.6 693 73.0
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 2.4e-282 975.3 689 73.4
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 6.9e-282 973.8 695 73.2
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 6.9e-282 973.8 694 72.5
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 9.0e-282 973.4 697 73.0
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 9.0e-282 973.4 696 72.8
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 1.2e-281 973.0 692 72.4
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 2.0e-281 972.2 684 74.0
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 2.0e-281 972.2 695 72.2
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 1.0e-280 969.9 692 72.5
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.7e-280 969.1 684 73.7
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 1.7e-280 969.1 698 72.3
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 8.5e-280 966.8 692 72.4
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 1.1e-279 966.5 692 73.4
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 4.2e-279 964.5 694 71.5
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 1.2e-278 963.0 690 73.2
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 3.0e-277 958.4 704 71.2
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 2.5e-276 955.3 694 71.2
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 9.7e-276 953.4 689 72.6
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 1.7e-275 952.6 680 73.4
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 1.4e-274 949.5 741 68.4
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 5.3e-274 947.6 694 70.9
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 1.2e-273 946.4 695 70.9
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 2.0e-273 945.7 722 68.0
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 2.7e-270 935.3 798 64.3
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 4.7e-270 934.5 693 70.7
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 1.3e-267 926.4 692 70.1
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 2.2e-267 925.6 695 70.4
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 2.8e-267 925.2 693 69.1
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 1.4e-266 922.9 691 70.8
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 1.5e-265 919.5 694 68.9
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 3.5e-265 918.3 648 73.6
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 7.2e-263 910.6 692 68.8
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 3.7e-251 871.7 680 67.8
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 7.7e-249 864.0 702 65.7
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 3.5e-241 838.6 689 64.6
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 8.9e-237 823.9 1199 44.2
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.4e-234 816.6 554 77.6
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 3.2e-234 815.5 716 60.2
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 7.0e-226 787.7 569 71.7
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 2.5e-223 779.2 719 57.6
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 9.5e-223 777.3 773 58.3
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 4.6e-217 758.4 534 74.7
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 2.0e-204 716.5 510 72.2
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.7e-203 713.4 468 77.4
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 4.6e-201 705.3 695 56.1
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 3.3e-199 699.1 641 57.6
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 9.0e-197 691.0 514 69.3
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 3.8e-179 632.5 419 76.6
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 4.7e-137 492.7 706 41.8
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 1.3e-131 474.6 723 40.9
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 3.2e-130 469.9 699 40.3
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.7e-118 431.0 684 42.4
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 8.6e-115 418.7 270 78.1
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 1.0e-112 411.8 473 48.4
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 3.1e-104 383.6 686 39.5
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 2.4e-101 374.0 275 74.9
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 3.4e-95 353.6 422 51.7
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 5.8e-95 352.8 233 78.1
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 3.3e-90 337.0 653 38.4
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 1.7e-83 314.7 676 34.6
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 6.9e-80 302.8 244 66.0
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 2.9e-70 270.8 218 66.1
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 1.4e-69 268.5 293 54.3
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 1.8e-59 235.0 201 64.7
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 8.7e-59 232.6 167 67.7
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 2.1e-44 184.9 143 69.9
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 2.1e-44 184.9 143 69.9
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 5.2e-35 153.7 122 68.0
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 4.1e-32 144.1 99 72.7
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 1.5e-29 135.6 115 60.0
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 4.4e-26 124.0 84 70.2
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 8.0e-20 103.2 206 38.3
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 2.7e-15 88.2 64 68.8
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 5.9e-15 87.0 142 38.0
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 2.9e-14 84.7 83 60.2


User provided reference genes

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