Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 3.0e-55 218.4 121 100.0
BcaB07g32754 Brassica carinata HOM05D006797 ORTHO05D007696 3.2e-49 198.4 121 91.7
BolC7t41975H Brassica oleracea HOM05D006797 ORTHO05D007696 5.5e-49 197.6 121 91.7
C07p14730 Brassica napus HOM05D006797 ORTHO05D007696 1.2e-48 196.4 121 90.9
BcaC05g27127 Brassica carinata HOM05D006797 ORTHO05D007696 1.0e-47 193.4 121 88.4
C05p30120 Brassica napus HOM05D006797 ORTHO05D007696 1.0e-47 193.4 121 88.4
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 4.0e-47 191.4 121 89.3
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 2.0e-46 189.1 121 89.3
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 3.4e-46 188.3 123 88.6
AL1G45170 Arabidopsis lyrata HOM05D006797 ORTHO05D007696 1.3e-45 186.4 119 86.6
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 1.3e-45 186.4 119 88.2
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 3.7e-45 184.9 121 88.4
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 6.3e-45 184.1 121 89.3
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 6.3e-45 184.1 121 89.3
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 6.3e-45 184.1 119 87.4
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 1.4e-44 183.0 121 86.8
BolC5t31749H Brassica oleracea HOM05D006797 ORTHO05D007696 2.4e-44 182.2 127 82.7
BraA09t39054Z Brassica rapa HOM05D006797 ORTHO05D007696 2.4e-44 182.2 122 86.9
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 3.1e-44 181.8 121 86.0
BolC8t48187H Brassica oleracea HOM05D006797 ORTHO05D007696 5.4e-44 181.0 121 86.0
CARHR030370 Cardamine hirsuta HOM05D006797 ORTHO05D007696 1.2e-43 179.9 120 86.7
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 7.2e-41 170.6 121 80.2
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 1.2e-35 153.3 123 72.4
BolC9t58594H Brassica oleracea HOM05D006797 ORTHO05D007696 1.4e-20 103.2 74 78.4
BcaC02g10358 Brassica carinata HOM05D006797 ORTHO05D007696 2.7e-19 99.0 79 72.2
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 1.7e-18 96.3 121 54.5
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 2.3e-18 95.9 122 54.9
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 3.0e-18 95.5 122 54.9
C04p29800 Brassica napus HOM05D006797 ORTHO05D007696 5.0e-18 94.7 111 55.9
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 5.6e-17 91.3 123 56.1
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 7.3e-17 90.9 122 52.5
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 6.2e-16 87.8 117 58.1
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 1.1e-15 87.0 123 52.0
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 1.4e-15 86.7 122 54.1
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 1.8e-15 86.3 122 50.8
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 5.2e-15 84.7 122 50.0
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 5.2e-15 84.7 121 52.9
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 6.8e-15 84.3 127 54.3
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 1.2e-14 83.6 122 48.4
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 1.5e-14 83.2 111 54.1
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 2.0e-14 82.8 124 53.2
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 2.0e-14 82.8 127 52.8
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 2.0e-14 82.8 122 50.0
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 3.4e-14 82.0 122 50.8
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 3.4e-14 82.0 125 56.8
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 5.8e-14 81.3 127 53.5
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 7.5e-14 80.9 122 52.5
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 7.5e-14 80.9 122 50.8
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 1.3e-13 80.1 118 55.1
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 1.7e-13 79.7 110 56.4
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 1.7e-13 79.7 118 50.0
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 2.2e-13 79.3 118 55.1
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 2.2e-13 79.3 117 53.0
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 3.7e-13 78.6 115 50.4
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 3.7e-13 78.6 119 52.1
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 4.9e-13 78.2 115 51.3
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 4.9e-13 78.2 124 48.4
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 6.4e-13 77.8 117 56.4
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 6.4e-13 77.8 118 51.7
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 1.1e-12 77.0 126 53.2
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 1.1e-12 77.0 114 55.3
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 1.1e-12 77.0 119 49.6
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 1.4e-12 76.6 117 51.3
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 1.9e-12 76.3 117 52.1
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 1.9e-12 76.3 117 52.1
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 2.4e-12 75.9 125 51.2
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 3.2e-12 75.5 115 55.7
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 3.2e-12 75.5 122 50.8
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 3.2e-12 75.5 117 56.4
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 7.1e-12 74.3 127 48.8
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 9.2e-12 73.9 129 45.7
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 1.2e-11 73.6 126 49.2
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 1.2e-11 73.6 118 48.3
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 2.1e-11 72.8 126 48.4
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 2.7e-11 72.4 126 49.2
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 3.5e-11 72.0 118 47.5
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 7.8e-11 70.9 125 48.8
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 1.0e-10 70.5 126 50.8
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 1.0e-10 70.5 121 49.6
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 2.3e-10 69.3 123 50.4
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 3.9e-10 68.6 127 45.7
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 5.1e-10 68.2 105 53.3
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 1.1e-09 67.0 114 48.2
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 1.1e-09 67.0 123 49.6
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 1.9e-09 66.2 123 50.4
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 7.3e-09 64.3 121 43.0
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 1.2e-08 63.5 123 50.4
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 2.1e-08 62.8 101 47.5
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 8.1e-08 60.8 124 44.4
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 8.1e-08 60.8 121 44.6
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 1.4e-07 60.1 121 43.8
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 1.8e-07 59.7 105 49.5
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 3.1e-07 58.9 124 46.0
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 3.1e-07 58.9 124 46.0
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 4.0e-07 58.5 113 49.6
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 5.2e-07 58.2 108 50.0
Thecc.02G002300 Theobroma cacao HOM05D006797 ORTHO05D007696 5.2e-07 58.2 73 58.9
ATR0763G022 Amborella trichopoda HOM05D006797 ORTHO05D007696 6.8e-07 57.8 112 42.9
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 1.2e-06 57.0 103 50.5
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 1.5e-06 56.6 124 45.2
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.5e-06 56.6 124 45.2
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 1.5e-06 56.6 121 43.8
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 2.6e-06 55.8 123 43.1
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 3.4e-06 55.5 124 45.2
Zm00001eb442340 Zea mays HOM05D006797 ORTHO05D007696 3.4e-06 55.5 104 46.2
Haze_24216 Corylus avellana HOM05D006797 ORTHO05D007696 5.8e-06 54.7 136 41.2
Sabra03G0112800 Salix brachista HOM05D006797 ORTHO05D007696 5.8e-06 54.7 55 61.8
unitig_37.g11921 Utricularia gibba HOM05D006797 ORTHO05D007696 9.9e-06 53.9 71 57.7


User provided reference genes

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