Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 4.0e-199 699.1 818 100.0
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 1.6e-155 554.3 821 90.3
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 5.1e-138 496.1 824 86.7
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 9.0e-135 485.3 821 87.3
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 1.3e-133 481.5 820 83.2
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 3.8e-133 479.9 820 85.0
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 8.4e-133 478.8 820 78.5
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 4.2e-132 476.5 820 84.9
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 1.1e-124 451.8 816 82.8
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 3.0e-122 443.7 822 84.1
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 8.7e-122 442.2 822 83.9
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 8.7e-122 442.2 822 83.9
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 2.8e-112 410.6 798 82.7
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 2.6e-94 350.9 819 77.0
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 2.6e-81 307.8 224 75.0
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 3.3e-81 307.4 226 75.7
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 2.8e-80 304.3 226 75.2
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 2.2e-64 251.5 820 71.3
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 5.4e-63 246.9 812 65.5
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 1.3e-61 242.3 688 80.7
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 8.6e-61 239.6 692 72.3
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 8.0e-59 233.0 694 77.5
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 8.9e-58 229.6 699 76.0
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 8.9e-58 229.6 690 75.8
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 1.2e-57 229.2 149 75.8
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.6e-57 228.0 688 78.3
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 3.4e-57 227.6 155 72.3
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 4.4e-57 227.3 689 77.5
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.3e-56 225.7 670 80.3
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 1.7e-56 225.3 146 75.3
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 2.9e-56 224.6 699 72.8
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 6.4e-56 223.4 698 72.1
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 8.3e-56 223.0 148 74.3
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 8.3e-56 223.0 689 76.2
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 1.9e-55 221.9 154 66.9
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 1.9e-55 221.9 670 79.6
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.4e-55 221.5 670 79.6
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 5.4e-55 220.3 699 74.2
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 7.0e-55 219.9 274 49.6
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 2.7e-54 218.0 151 70.9
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 3.5e-54 217.6 696 73.1
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 4.6e-54 217.2 154 66.2
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 4.6e-54 217.2 152 69.1
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 7.8e-54 216.5 705 71.9
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 1.0e-53 216.1 274 48.2
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.0e-53 216.1 699 72.2
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 1.3e-53 215.7 156 67.3
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 1.3e-53 215.7 699 73.8
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 3.0e-53 214.5 155 70.3
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 3.9e-53 214.2 678 73.6
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 5.0e-53 213.8 158 69.6
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 5.0e-53 213.8 137 72.3
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 8.6e-53 213.0 152 71.1
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 1.5e-52 212.2 152 65.8
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 2.5e-52 211.5 153 65.4
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 4.3e-52 210.7 152 69.7
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 1.2e-51 209.1 153 69.3
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 1.2e-51 209.1 155 67.1
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 2.1e-51 208.4 127 75.6
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 2.1e-51 208.4 152 68.4
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 2.8e-51 208.0 156 67.3
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 3.6e-51 207.6 151 68.2
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 4.7e-51 207.2 683 72.3
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 6.2e-51 206.8 152 65.8
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 6.2e-51 206.8 668 70.8
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 8.0e-51 206.5 678 72.4
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 8.0e-51 206.5 263 54.4
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 1.8e-50 205.3 668 77.5
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 3.1e-50 204.5 125 77.6
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 3.1e-50 204.5 155 67.1
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 4.0e-50 204.1 809 69.2
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 5.2e-50 203.8 658 76.3
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 1.2e-49 202.6 150 64.0
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 1.5e-49 202.2 153 62.7
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 2.6e-49 201.4 150 68.0
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 3.4e-49 201.1 133 71.4
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.8e-49 200.3 147 67.3
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 7.5e-49 199.9 151 64.9
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 2.2e-48 198.4 152 63.8
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 2.9e-48 198.0 706 61.2
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 1.4e-47 195.7 155 64.5
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 1.4e-47 195.7 679 72.0
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 3.2e-47 194.5 671 76.5
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 3.2e-47 194.5 671 76.5
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 4.1e-47 194.1 129 72.1
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 7.0e-47 193.4 119 84.9
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 7.0e-47 193.4 152 63.8
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 9.2e-47 193.0 671 76.2
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 1.6e-46 192.2 153 62.7
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 4.6e-46 190.7 152 57.9
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 7.8e-46 189.9 150 58.7
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 1.7e-45 188.7 152 63.2
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 3.0e-45 188.0 126 72.2
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 1.1e-44 186.0 126 72.2
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 1.5e-44 185.7 149 61.7
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 2.5e-44 184.9 133 67.7
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 1.8e-42 178.7 132 66.7
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 1.9e-39 168.7 111 73.0
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 5.4e-39 167.2 162 55.6
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 2.7e-38 164.9 155 56.1
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 7.8e-38 163.3 724 71.1
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 1.7e-37 162.2 128 58.6
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 8.6e-37 159.8 111 70.3
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 4.3e-36 157.5 636 74.5
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 9.5e-36 156.4 104 71.2
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 1.2e-35 156.0 121 69.4
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 1.8e-34 152.1 107 69.2
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 3.1e-34 151.4 133 56.4
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 2.2e-32 145.2 100 69.0
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 4.9e-32 144.1 114 58.8
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 1.4e-31 142.5 150 49.3
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 4.2e-31 141.0 111 61.3
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 1.2e-30 139.4 127 57.5
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 2.3e-29 135.2 126 56.3
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 3.0e-29 134.8 111 59.5
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 2.4e-26 125.2 107 57.9
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 4.4e-25 120.9 153 47.7
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 1.3e-24 119.4 77 74.0
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 3.8e-24 117.9 113 52.2
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 1.9e-23 115.5 88 69.3
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 2.4e-23 115.2 82 64.6
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 3.5e-22 111.3 80 65.0
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 8.7e-21 106.7 110 50.0
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 3.6e-19 101.3 82 59.8
BcaB07g32630 Brassica carinata HOM05D005337 ORTHO05D006567 1.1e-18 99.8 55 87.3
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 1.1e-15 89.7 95 46.3
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 1.0e-13 83.2 67 58.2
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 1.8e-13 82.4 61 63.9
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 9.6e-12 76.6 59 64.4
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 2.8e-11 75.1 49 77.6
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 5.8e-09 67.4 109 31.2
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 1.7e-08 65.9 120 32.5
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 3.8e-08 64.7 150 29.3
Lj2C113T11 Lonicera japonica HOM05D006740 ORTHO05D008571 4.9e-08 64.3 115 28.7
Peaxi162Scf00046g00155 Petunia axillaris HOM05D006740 ORTHO05D008571 6.4e-08 63.9 115 27.8
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 8.4e-08 63.5 104 33.7
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 1.1e-07 63.2 116 31.9
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 1.4e-07 62.8 120 30.0
MSTRG.19161 Avicennia marina HOM05D006740 ORTHO05D008571 1.9e-07 62.4 133 28.6
CDE07G1133 Ceratophyllum demersum HOM05D006596 ORTHO05D008497 1.9e-07 62.4 130 27.7
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 2.5e-07 62.0 116 31.0
Lsat_1_v5_gn_6_30921 Lactuca sativa HOM05D006740 ORTHO05D008571 3.2e-07 61.6 115 28.7
PSO384G2338 Papaver somniferum HOM05D005973 ORTHO05D007285 3.2e-07 61.6 116 31.0
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 3.2e-07 61.6 116 31.0
TWI74G0655 Tripterygium wilfordii HOM05D006740 ORTHO05D008571 4.2e-07 61.2 115 28.7
DCAR_017698 Daucus carota HOM05D006740 ORTHO05D008571 9.3e-07 60.1 115 26.1
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 9.3e-07 60.1 118 30.5
TAR623G1677 Trochodendron aralioides HOM05D005973 ORTHO05D007285 9.3e-07 60.1 116 30.2
Dinv05038 Davidia involucrata HOM05D005973 ORTHO05D007285 1.2e-06 59.7 116 30.2
Duzib151G0326 Durio zibethinus HOM05D006740 ORTHO05D008571 1.2e-06 59.7 155 25.8
CANSAT64G0911 Cannabis sativa HOM05D006740 ORTHO05D008571 2.1e-06 58.9 115 27.0
BcaB03g13836 Brassica carinata HOM05D005337 ORTHO05D006567 2.7e-06 58.5 98 44.9
Dinv35763 Davidia involucrata HOM05D006740 ORTHO05D008571 2.7e-06 58.5 115 27.0
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 2.7e-06 58.5 120 29.2
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 3.5e-06 58.2 105 37.1
Nn1g09562 Nelumbo nucifera HOM05D006926 ORTHO05D008863 3.5e-06 58.2 142 23.9
SGA_v2.0_scaffold7G03966 Striga asiatica HOM05D006740 ORTHO05D008571 4.6e-06 57.8 115 27.8
Cpa.g.sc104.1 Carica papaya HOM05D006596 ORTHO05D008497 6.0e-06 57.4 114 28.1
Rhsim05G0126600 Rhododendron simsii HOM05D005973 ORTHO05D007285 6.0e-06 57.4 104 31.7
EL10Ac2g02881 Beta vulgaris HOM05D005973 ORTHO05D007285 7.9e-06 57.0 129 30.2
Migut.J00539 Erythranthe guttata HOM05D006740 ORTHO05D008571 7.9e-06 57.0 115 25.2


User provided reference genes

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