Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 5.1e-42 174.1 95 100.0
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 9.7e-33 143.3 96 85.4
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 6.1e-27 124.0 95 77.9
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 2.3e-26 122.1 97 76.3
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 5.2e-26 120.9 98 75.5
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 5.2e-26 120.9 98 75.5
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 1.2e-25 119.8 97 75.3
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 2.6e-25 118.6 98 74.5
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 4.4e-25 117.9 95 74.7
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 1.7e-24 115.9 95 73.7
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 1.7e-24 115.9 99 76.8
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 4.8e-24 114.4 95 75.8
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 1.4e-23 112.8 95 74.7
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 1.4e-23 112.8 90 76.7
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 1.7e-21 105.9 99 71.7
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 1.5e-20 102.8 98 67.3
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 4.2e-20 101.3 96 65.6
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 5.0e-13 77.8 98 56.1
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 5.5e-12 74.3 73 64.4
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 2.8e-11 72.0 53 75.5
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 8.0e-11 70.5 54 68.5
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 8.0e-11 70.5 54 68.5
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 8.0e-11 70.5 52 78.8
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 1.8e-10 69.3 91 51.6
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 5.2e-10 67.8 57 61.4
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 8.8e-10 67.0 53 64.2
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 1.2e-09 66.6 49 73.5
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.2e-09 66.6 66 56.1
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.2e-09 66.6 66 54.5
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.5e-09 66.2 98 45.9
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.5e-09 66.2 92 47.8
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.0e-09 65.9 50 74.0
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.0e-09 65.9 50 74.0
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 2.6e-09 65.5 97 47.4
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.6e-09 65.5 50 74.0
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 2.6e-09 65.5 78 57.7
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 3.4e-09 65.1 75 58.7
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 5.7e-09 64.3 96 46.9
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 5.7e-09 64.3 48 68.8
MBI02_g07020_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 5.7e-09 64.3 49 69.4
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 7.5e-09 63.9 56 57.1
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 7.5e-09 63.9 56 57.1
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 7.5e-09 63.9 83 49.4
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 7.5e-09 63.9 40 75.0
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 7.5e-09 63.9 53 58.5
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 7.5e-09 63.9 73 53.4
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 9.8e-09 63.5 77 51.9
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 9.8e-09 63.5 69 52.2
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.3e-08 63.2 50 72.0
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.3e-08 63.2 50 72.0
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 1.3e-08 63.2 87 48.3
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 1.7e-08 62.8 73 50.7
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 1.7e-08 62.8 49 63.3
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 1.7e-08 62.8 70 50.0
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 1.7e-08 62.8 75 56.0
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 2.2e-08 62.4 100 47.0
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 2.8e-08 62.0 72 51.4
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 2.8e-08 62.0 50 64.0
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 2.8e-08 62.0 89 46.1
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 3.7e-08 61.6 66 53.0
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 3.7e-08 61.6 47 63.8
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 3.7e-08 61.6 83 50.6
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.7e-08 61.6 73 52.1
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 4.9e-08 61.2 71 56.3
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 4.9e-08 61.2 42 69.0
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 4.9e-08 61.2 96 45.8
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 4.9e-08 61.2 43 62.8
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 4.9e-08 61.2 39 74.4
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 6.3e-08 60.8 81 48.1
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 6.3e-08 60.8 70 52.9
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 6.3e-08 60.8 51 62.7
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 8.3e-08 60.5 39 71.8
Aa31LG6G3080 Aethionema arabicum HOM05D012071 ORTHO05D013970 1.1e-07 60.1 47 70.2
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 1.4e-07 59.7 96 42.7
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 1.8e-07 59.3 42 66.7
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 2.4e-07 58.9 70 52.9
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 2.4e-07 58.9 84 45.2
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 2.4e-07 58.9 48 60.4
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 2.4e-07 58.9 48 60.4
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 2.4e-07 58.9 86 45.3
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.4e-07 58.9 74 50.0
Duzib160G0583 Durio zibethinus HOM05D006325 ORTHO05D007878 3.1e-07 58.5 75 49.3
Gohir.A10G043400 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.1e-07 58.5 49 63.3
Gohir.D10G044600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.1e-07 58.5 49 63.3
Gorai.011G047600 Gossypium raimondii HOM05D006325 ORTHO05D007878 3.1e-07 58.5 49 63.3
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 3.1e-07 58.5 62 56.5
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 3.1e-07 58.5 57 54.4
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 3.1e-07 58.5 97 40.2
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 3.1e-07 58.5 76 51.3
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 4.1e-07 58.2 89 43.8
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 4.1e-07 58.2 50 60.0
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 7.0e-07 57.4 74 51.4
Gohir.D06G144350 Gossypium hirsutum HOM05D006325 ORTHO05D007878 7.0e-07 57.4 43 67.4
Gorai.010G168000 Gossypium raimondii HOM05D006325 ORTHO05D007878 7.0e-07 57.4 43 67.4
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 7.0e-07 57.4 48 58.3
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 9.2e-07 57.0 74 47.3
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 9.2e-07 57.0 69 44.9
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 9.2e-07 57.0 62 50.0
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 9.2e-07 57.0 83 44.6
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 9.2e-07 57.0 83 44.6
AT4G21060 Arabidopsis thaliana HOM05D000777 ORTHO05D000595 1.2e-06 56.6 41 75.6
BcaC09g51267 Brassica carinata HOM05D012071 ORTHO05D013970 1.2e-06 56.6 39 79.5
BcaNung04703 Brassica carinata HOM05D012071 ORTHO05D013970 1.2e-06 56.6 39 79.5
A01p12410 Brassica napus HOM05D000777 ORTHO05D000595 1.2e-06 56.6 39 79.5
A03p52620 Brassica napus HOM05D012071 ORTHO05D013970 1.2e-06 56.6 39 79.5
C07p51060 Brassica napus HOM05D012071 ORTHO05D013970 1.2e-06 56.6 39 79.5
BolC1t01447H Brassica oleracea HOM05D000777 ORTHO05D000595 1.2e-06 56.6 39 79.5
BraA01t01187Z Brassica rapa HOM05D000777 ORTHO05D000595 1.2e-06 56.6 39 79.5
BraA03t14336Z Brassica rapa HOM05D012071 ORTHO05D013970 1.2e-06 56.6 39 79.5
CARHR227630 Cardamine hirsuta HOM05D012071 ORTHO05D013970 1.2e-06 56.6 41 75.6
MBI18_g11235_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 1.2e-06 56.6 49 59.2
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 1.2e-06 56.6 64 54.7
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 1.6e-06 56.2 102 43.1
Medtr1437s0010 Medicago truncatula HOM05D006325 ORTHO05D007878 1.6e-06 56.2 48 56.2
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 2.7e-06 55.5 41 65.9
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 2.7e-06 55.5 87 41.4
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 2.7e-06 55.5 39 66.7
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 2.7e-06 55.5 79 41.8
Sed0022207 Sechium edule HOM05D006325 ORTHO05D007878 2.7e-06 55.5 76 50.0
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 2.7e-06 55.5 84 44.0
ClCG03G006550 Citrullus lanatus HOM05D006325 ORTHO05D007878 3.5e-06 55.1 69 53.6
C01p14990 Brassica napus HOM05D012071 ORTHO05D013970 4.5e-06 54.7 74 55.4
BolC7t45606H Brassica oleracea HOM05D012071 ORTHO05D013970 4.5e-06 54.7 38 78.9
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 4.5e-06 54.7 87 41.4
AL7G33090 Arabidopsis lyrata HOM05D012071 ORTHO05D013970 5.9e-06 54.3 98 46.9
Carub.0007s2040 Capsella rubella HOM05D012071 ORTHO05D013970 7.8e-06 53.9 39 76.9


User provided reference genes

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