Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 0.0e+00 1587.8 831 100.0
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 0.0e+00 1284.6 833 82.6
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 0.0e+00 1278.1 832 82.0
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 0.0e+00 1257.3 835 80.4
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 0.0e+00 1249.2 848 79.4
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 0.0e+00 1244.2 832 79.8
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1241.1 833 80.6
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1240.3 833 79.7
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1234.2 832 79.7
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 0.0e+00 1232.2 832 79.7
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1231.5 834 79.5
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1231.1 832 79.4
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1227.6 834 79.4
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1226.5 834 79.1
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 0.0e+00 1215.7 835 78.7
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1204.9 834 78.2
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 0.0e+00 1198.0 835 78.1
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 3.7e-277 958.4 836 64.6
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 3.8e-274 948.3 605 82.5
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 3.0e-271 938.7 845 62.4
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 2.3e-194 683.3 710 53.1
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 4.8e-192 675.6 709 52.9
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 4.5e-190 669.1 715 52.4
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 1.6e-187 660.6 735 50.5
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 6.0e-187 658.7 735 50.3
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.3e-186 657.5 707 52.1
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 2.5e-185 653.3 722 51.0
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 1.3e-184 651.0 788 48.2
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.5e-182 644.0 816 46.6
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 7.6e-182 641.7 856 45.8
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 2.1e-179 633.6 856 45.2
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 3.5e-179 632.9 656 52.9
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 3.0e-178 629.8 877 44.7
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 7.4e-177 625.2 856 45.6
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 3.7e-176 622.9 768 48.6
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 2.0e-174 617.1 842 44.9
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 2.0e-174 617.1 716 49.4
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 2.2e-173 613.6 730 49.0
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 1.2e-171 607.8 716 49.0
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 2.3e-170 603.6 716 48.7
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 5.1e-170 602.4 813 44.8
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 3.3e-169 599.7 825 45.0
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 4.3e-169 599.4 809 45.7
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 3.7e-168 596.3 717 47.3
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 1.2e-166 591.3 763 45.5
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 3.8e-165 586.3 705 49.1
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 2.5e-164 583.6 851 42.8
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 4.2e-164 582.8 701 47.4
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 9.3e-164 581.6 852 42.4
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 2.7e-163 580.1 851 42.2
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 3.6e-163 579.7 700 49.3
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 4.6e-163 579.3 852 42.3
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 1.3e-162 577.8 692 47.7
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 5.1e-162 575.9 706 47.0
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 1.9e-161 573.9 763 44.6
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 4.3e-161 572.8 875 42.7
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 7.4e-161 572.0 718 48.1
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 9.7e-161 571.6 726 46.0
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 4.8e-160 569.3 677 49.0
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 6.3e-160 568.9 693 47.0
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 5.3e-159 565.8 716 46.9
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 1.5e-158 564.3 727 45.9
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 1.3e-157 561.2 737 46.4
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 8.5e-157 558.5 718 44.6
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 2.5e-156 557.0 700 46.7
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 6.1e-155 552.4 714 45.0
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 1.8e-154 550.8 650 47.2
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.8e-154 550.8 795 43.5
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 2.3e-154 550.4 717 46.2
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 3.0e-154 550.1 805 42.7
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 6.7e-154 548.9 697 44.5
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 2.0e-153 547.4 730 43.3
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 4.4e-153 546.2 651 48.4
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.2e-152 543.9 857 41.0
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 3.7e-152 543.1 720 46.0
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 4.8e-152 542.7 871 40.2
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 1.1e-151 541.6 871 40.0
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 1.4e-151 541.2 656 46.8
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 4.1e-151 539.7 773 43.5
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.0e-150 537.3 834 40.2
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 2.6e-150 537.0 715 43.5
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 4.2e-148 529.6 751 43.9
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 1.1e-145 521.5 803 41.2
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 2.6e-145 520.4 767 41.9
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 7.4e-145 518.8 901 38.5
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 9.7e-145 518.5 750 42.1
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.3e-144 518.1 711 44.2
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 1.3e-144 518.1 844 39.2
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 8.2e-144 515.4 716 43.6
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 4.1e-143 513.1 620 47.7
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 5.3e-143 512.7 627 47.0
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 1.6e-142 511.1 656 46.2
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 2.9e-141 506.9 538 52.6
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 2.7e-139 500.4 780 41.7
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 3.0e-138 496.9 645 46.7
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 2.6e-137 493.8 702 42.2
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 2.7e-134 483.8 682 43.8
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 1.5e-132 478.0 839 39.7
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 2.5e-132 477.2 747 40.2
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 7.2e-132 475.7 823 38.5
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 9.8e-129 465.3 774 39.3
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.7e-128 464.5 678 41.6
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.7e-125 454.5 768 37.6
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 3.6e-123 446.8 666 41.6
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.3e-117 427.6 653 40.7
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 5.0e-117 426.4 653 40.9
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.4e-111 408.3 656 39.2
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 2.5e-108 397.5 736 37.4
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 6.4e-104 382.9 677 37.4
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.9e-103 381.3 536 42.5
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.9e-103 381.3 536 42.5
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 4.7e-99 366.7 697 35.0
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 8.9e-98 362.5 453 49.4
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 2.2e-96 357.8 548 40.9
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 7.1e-95 352.8 597 39.4
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.3e-93 347.8 446 45.7
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 9.5e-92 342.4 474 46.2
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 1.1e-90 339.0 354 52.0
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 2.6e-89 334.3 707 35.1
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.4e-89 334.0 521 41.8
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.1e-84 318.9 657 34.1
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.1e-84 318.9 657 34.1
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 7.3e-84 316.2 703 33.7
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.4e-82 312.0 434 44.7
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.5e-81 308.5 402 46.0
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 2.9e-80 304.3 346 50.3
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 2.9e-72 277.7 818 29.0
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.6e-70 271.9 275 51.3
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 4.0e-66 257.3 806 28.9
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 6.9e-66 256.5 453 37.3
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.5e-60 238.8 429 38.2
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 2.6e-57 228.0 304 49.3
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.7e-54 218.0 224 51.8
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 3.3e-52 211.1 146 76.7
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.5e-49 202.2 457 33.5
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.0e-48 199.5 620 31.5
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.1e-47 196.1 334 37.4
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 3.3e-44 184.5 193 51.8
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 1.7e-43 182.2 109 82.6
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 2.8e-43 181.4 109 81.7
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 5.9e-41 173.7 121 74.4
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 2.2e-40 171.8 345 37.7
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 4.7e-38 164.1 271 40.2
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 6.7e-37 160.2 140 55.0
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.8e-35 154.8 155 52.9
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 1.8e-34 152.1 140 55.0
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 3.5e-33 147.9 261 38.7
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 5.9e-33 147.1 82 84.1
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 3.8e-32 144.4 87 81.6
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 8.5e-32 143.3 82 82.9
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 8.5e-32 143.3 82 82.9
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 5.5e-31 140.6 82 81.7
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 3.0e-29 134.8 204 42.6
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.9e-29 134.4 181 42.5
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 7.4e-28 130.2 171 44.4
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 9.7e-28 129.8 178 44.9
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 2.2e-27 128.6 72 86.1
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 2.8e-27 128.3 118 55.1
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 4.8e-27 127.5 72 84.7
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 4.8e-27 127.5 281 35.6
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 5.3e-26 124.0 220 36.8
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 4.5e-25 120.9 122 53.3
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 5.9e-25 120.6 232 36.2
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 2.2e-24 118.6 239 33.5
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 1.9e-23 115.5 139 45.3
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 2.1e-22 112.1 151 41.1
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 1.5e-20 105.9 134 44.8
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 1.2e-17 96.3 129 39.5
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 1.0e-16 93.2 177 39.0
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.2e-15 87.8 181 35.4
Aa31LG6G5510 Aethionema arabicum HOM05D003594 ORTHO05D004268 1.0e-13 83.2 78 60.3
AL1G44190 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 2.3e-13 82.0 126 45.2
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 8.8e-13 80.1 90 47.8
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 1.2e-12 79.7 90 47.8
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.5e-12 79.3 102 48.0
Ciclev10030203m.g Citrus clementina HOM05D003594 ORTHO05D026973 7.5e-12 77.0 110 43.6
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 1.8e-10 72.4 62 58.1
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 1.8e-10 72.4 62 56.5
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 5.4e-10 70.9 75 48.0
BcaB08g34815 Brassica carinata HOM05D003594 ORTHO05D004268 4.5e-09 67.8 44 72.7
QL04p046243 Quercus lobata HOM05D003594 ORTHO05D026973 1.7e-08 65.9 95 44.2
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 5.0e-08 64.3 82 47.6
Actinidia36694 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.9e-07 62.4 60 55.0
SHI24305 Sapria himalayana HOM05D000023 ORTHO05D000014 4.7e-06 57.8 58 46.6


User provided reference genes

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