Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g25580 Schrenkiella parvula HOM05D004993 ORTHO05D008532 2.3e-193 678.7 341 100.0
A08p24930 Brassica napus HOM05D004993 ORTHO05D008532 5.2e-177 624.4 343 91.8
BraA08t34448Z Brassica rapa HOM05D004993 ORTHO05D008532 5.7e-176 620.9 343 91.3
AL1G43530 Arabidopsis lyrata HOM05D004993 ORTHO05D008532 2.4e-174 615.5 341 90.6
BcaC01g00125 Brassica carinata HOM05D004993 ORTHO05D008532 4.1e-174 614.8 346 91.3
C03p76040 Brassica napus HOM05D004993 ORTHO05D008532 7.0e-174 614.0 346 91.3
BolC3t19860H Brassica oleracea HOM05D004993 ORTHO05D008532 2.0e-173 612.5 346 90.8
AT1G29700 Arabidopsis thaliana HOM05D004993 ORTHO05D008532 5.0e-172 607.8 341 89.1
BcaB03g12171 Brassica carinata HOM05D004993 ORTHO05D008532 6.5e-172 607.4 343 90.4
Carub.0001s2791 Capsella rubella HOM05D004993 ORTHO05D008532 2.7e-165 585.5 342 87.1
CARHR029050 Cardamine hirsuta HOM05D004993 ORTHO05D008532 8.5e-164 580.5 341 85.3
Aa31LG6G5980 Aethionema arabicum HOM05D004993 ORTHO05D008532 3.7e-151 538.5 337 81.0
THA.LOC104808209 Tarenaya hassleriana HOM05D004993 ORTHO05D008532 9.2e-142 507.3 343 74.1
Thhalv10009499m.g Eutrema salsugineum HOM05D004993 ORTHO05D008532 3.0e-140 502.3 341 77.7
TWI31G0395 Tripterygium wilfordii HOM05D004993 ORTHO05D008532 1.4e-129 466.8 328 72.0
Cfa018620 Carpinus fangiana HOM05D004993 ORTHO05D008532 1.2e-128 463.8 322 72.4
Thecc.02G359900 Theobroma cacao HOM05D004993 ORTHO05D008532 3.4e-128 462.2 283 76.3
TAR371G0197 Trochodendron aralioides HOM05D004993 ORTHO05D008532 9.9e-128 460.7 312 73.1
CANSAT64G2606 Cannabis sativa HOM05D004993 ORTHO05D008532 8.4e-127 457.6 335 68.7
Gorai.008G185400 Gossypium raimondii HOM05D004993 ORTHO05D008532 2.4e-126 456.1 336 68.2
Gohir.D12G172900 Gossypium hirsutum HOM05D004993 ORTHO05D008532 4.1e-126 455.3 339 68.4
COL.COLO4_07879 Corchorus olitorius HOM05D004993 ORTHO05D008532 1.6e-125 453.4 341 68.6
CiPaw.16G003600 Carya illinoinensis HOM05D004993 ORTHO05D008532 4.6e-125 451.8 333 67.6
Gohir.A12G170200 Gossypium hirsutum HOM05D004993 ORTHO05D008532 4.6e-125 451.8 346 65.6
MD16G1046900 Malus domestica HOM05D004993 ORTHO05D008532 1.0e-124 450.7 323 70.0
Gohir.D12G173500 Gossypium hirsutum HOM05D004993 ORTHO05D008532 2.3e-124 449.5 346 65.9
Hma1.2p1_0862F.1_g229950 Hydrangea macrophylla HOM05D004993 ORTHO05D008532 2.3e-124 449.5 340 67.4
FvH4_4g27971 Fragaria vesca HOM05D004993 ORTHO05D008532 3.9e-124 448.7 335 68.1
Gorai.008G186000 Gossypium raimondii HOM05D004993 ORTHO05D008532 8.6e-124 447.6 346 65.6
MSTRG.7682 Avicennia marina HOM05D004993 ORTHO05D008532 1.9e-123 446.4 324 67.3
Gohir.A12G169600 Gossypium hirsutum HOM05D004993 ORTHO05D008532 2.5e-123 446.0 333 67.3
CSS0044433 Camellia sinensis var. sinensis HOM05D004993 ORTHO05D008532 4.3e-123 445.3 339 67.0
Haze_17449 Corylus avellana HOM05D004993 ORTHO05D008532 4.3e-123 445.3 376 63.0
CsaV3_5G034030 Cucumis sativus L. HOM05D004993 ORTHO05D008532 4.3e-123 445.3 330 68.5
arahy.Tifrunner.gnm1.ann1.VJ59XU Arachis hypogaea HOM05D004993 ORTHO05D008532 7.3e-123 444.5 338 65.4
Atru.chr11.1340 Acer truncatum HOM05D004993 ORTHO05D008532 1.2e-122 443.7 298 72.8
arahy.Tifrunner.gnm1.ann1.5ZE4QE Arachis hypogaea HOM05D004993 ORTHO05D008532 1.2e-122 443.7 338 65.4
FAN07G2608 Fragaria x ananassa HOM05D004993 ORTHO05D008532 1.2e-122 443.7 335 67.5
Prupe.1G306400 Prunus persica HOM05D004993 ORTHO05D008532 1.6e-122 443.4 314 70.1
Nn3g17764 Nelumbo nucifera HOM05D004993 ORTHO05D008532 2.1e-122 443.0 341 65.1
PGR102G1294 Punica granatum HOM05D004993 ORTHO05D008532 2.8e-122 442.6 324 69.4
GSVIVG01011941001 Vitis vinifera HOM05D004993 ORTHO05D008532 2.8e-122 442.6 340 65.9
Lj3A1018T65 Lonicera japonica HOM05D004993 ORTHO05D008532 3.6e-122 442.2 283 72.8
Glyma.02G098700 Glycine max HOM05D004993 ORTHO05D008532 6.2e-122 441.4 336 66.4
Ciclev10031998m.g Citrus clementina HOM05D004993 ORTHO05D008532 1.1e-121 440.7 343 64.7
Manes.14G098500 Manihot esculenta HOM05D004993 ORTHO05D008532 1.1e-121 440.7 342 67.3
Cc11_g10510 Coffea canephora HOM05D004993 ORTHO05D008532 1.4e-121 440.3 292 72.6
FAN17G0685 Fragaria x ananassa HOM05D004993 ORTHO05D008532 1.4e-121 440.3 287 74.6
MELO3C012219.2 Cucumis melo HOM05D004993 ORTHO05D008532 2.4e-121 439.5 328 68.6
Lj2g0001269 Lotus japonicus HOM05D004993 ORTHO05D008532 3.1e-121 439.1 279 73.1
Potri.008G117600 Populus trichocarpa HOM05D004993 ORTHO05D008532 3.1e-121 439.1 330 68.2
Nitab4.5_0000582g0040 Nicotiana tabacum HOM05D004993 ORTHO05D008532 5.2e-121 438.3 338 63.9
RcHm_v2.0_Chr4g0435691 Rosa chinensis HOM05D004993 ORTHO05D008532 5.2e-121 438.3 332 67.5
Sc04g0006640 Simmondsia chinensis HOM05D004993 ORTHO05D008532 6.8e-121 438.0 326 68.4
Duzib251G0893 Durio zibethinus HOM05D004993 ORTHO05D008532 1.2e-120 437.2 348 64.9
MBI16_g25106_MAGBIO Magnolia biondii HOM05D004993 ORTHO05D008532 1.5e-120 436.8 284 73.6
Lalb_Chr17g0341941 Lupinus albus HOM05D004993 ORTHO05D008532 2.6e-120 436.0 281 71.9
Phvul.003G028100 Phaseolus vulgaris HOM05D004993 ORTHO05D008532 4.4e-120 435.3 313 68.4
VMungo1215G2957 Vigna mungo HOM05D004993 ORTHO05D008532 6.4e-119 431.4 309 68.6
Aqoxy3G03926 Aquilegia oxysepala HOM05D004993 ORTHO05D008532 8.4e-119 431.0 284 71.5
AUR62002913 Chenopodium quinoa HOM05D004993 ORTHO05D008532 3.2e-118 429.1 335 64.8
SalBow8G3546 Salvia bowleyana HOM05D004993 ORTHO05D008532 7.1e-118 427.9 291 70.1
Dinv16501 Davidia involucrata HOM05D004993 ORTHO05D008532 2.7e-117 426.0 312 68.6
Lsat_1_v5_gn_4_20101 Lactuca sativa HOM05D004993 ORTHO05D008532 3.5e-117 425.6 294 69.4
Sopen03g030820 Solanum pennellii HOM05D004993 ORTHO05D008532 1.3e-116 423.7 312 67.3
PSO063G3032 Papaver somniferum HOM05D004993 ORTHO05D008532 2.3e-116 422.9 311 65.9
AUR62035273 Chenopodium quinoa HOM05D004993 ORTHO05D008532 3.9e-116 422.2 283 71.7
QL01p044817 Quercus lobata HOM05D004993 ORTHO05D008532 6.6e-116 421.4 291 72.2
TPR.G38312 Trifolium pratense HOM05D004993 ORTHO05D008532 1.5e-115 420.2 334 63.8
unitig_8.g3446 Utricularia gibba HOM05D004993 ORTHO05D008532 1.9e-115 419.9 281 70.5
EL10Ac6g14467 Beta vulgaris HOM05D004993 ORTHO05D008532 4.3e-115 418.7 312 67.9
Sed0024124 Sechium edule HOM05D004993 ORTHO05D008532 4.3e-115 418.7 323 67.2
Migut.O00833 Erythranthe guttata HOM05D004993 ORTHO05D008532 7.3e-115 417.9 284 69.7
Solyc03g111700.3 Solanum lycopersicum HOM05D004993 ORTHO05D008532 7.3e-115 417.9 313 66.5
HanXRQChr17g0567931 Helianthus annuus HOM05D004993 ORTHO05D008532 1.6e-114 416.8 325 62.5
CAN.G630.88 Capsicum annuum HOM05D004993 ORTHO05D008532 2.1e-114 416.4 336 63.4
RhsimUnG0136600 Rhododendron simsii HOM05D004993 ORTHO05D008532 2.1e-114 416.4 256 75.4
vmacro01368 Vaccinium macrocarpon HOM05D004993 ORTHO05D008532 6.2e-114 414.8 383 57.7
PGSC0003DMG402001731 Solanum tuberosum HOM05D004993 ORTHO05D008532 3.1e-113 412.5 300 67.7
ECA234G2629 Erigeron canadensis HOM05D004993 ORTHO05D008532 9.0e-113 411.0 280 71.1
Sabra08G0089200 Salix brachista HOM05D004993 ORTHO05D008532 2.0e-112 409.8 304 68.4
CSS0008970 Camellia sinensis var. sinensis HOM05D004993 ORTHO05D008532 8.4e-111 404.4 342 61.4
SGA_v2.0_scaffold209G42027 Striga asiatica HOM05D004993 ORTHO05D008532 4.2e-110 402.1 327 61.5
Eucgr.B03043 Eucalyptus grandis HOM05D004993 ORTHO05D008532 7.1e-110 401.4 296 69.6
ATR0681G095 Amborella trichopoda HOM05D004993 ORTHO05D008532 6.0e-109 398.3 341 61.3
Medtr5g054360 Medicago truncatula HOM05D004993 ORTHO05D008532 7.9e-109 397.9 284 68.0
HPP92_005309 Vanilla planifolia HOM05D004993 ORTHO05D008532 4.8e-106 388.7 265 68.3
Hund05759 Selenicereus undatus HOM05D000924 ORTHO05D001209 1.4e-105 387.1 410 51.0
Peaxi162Scf00004g01611 Petunia axillaris HOM05D004993 ORTHO05D008532 6.9e-105 384.8 279 66.7
CDE04G2310 Ceratophyllum demersum HOM05D004993 ORTHO05D008532 1.4e-102 377.1 330 57.3
PSO782G1223 Papaver somniferum HOM05D004993 ORTHO05D008532 2.5e-99 366.3 311 60.5
Nitab4.5_0004719g0040 Nicotiana tabacum HOM05D004993 ORTHO05D008532 1.3e-95 354.0 229 72.5
Mapoly0053s0088 Marchantia polymorpha HOM05D004993 ORTHO05D008532 3.0e-92 342.8 268 58.6
SMO361G0287 Selaginella moellendorffii HOM05D004993 ORTHO05D008532 4.8e-90 335.5 258 60.5
Pp3c15_25860 Physcomitrium patens HOM05D004993 ORTHO05D008532 1.1e-86 324.3 300 53.3
Os12g0641300 Oryza sativa ssp. japonica HOM05D004993 ORTHO05D008532 5.5e-86 322.0 275 60.4
Ah.02g127080 Amaranthus hybridus HOM05D004993 ORTHO05D008532 1.3e-84 317.4 315 55.2
CiPaw.15G004200 Carya illinoinensis HOM05D004993 ORTHO05D008532 1.5e-83 313.9 303 57.4
AagrBONN_evm.TU.Sc2ySwM_344.778 Anthoceros agrestis HOM05D004993 ORTHO05D008532 1.9e-83 313.5 253 58.5
Zm00001eb133920 Zea mays HOM05D004993 ORTHO05D008532 7.4e-83 311.6 281 58.7
MD13G1045600 Malus domestica HOM05D004993 ORTHO05D008532 2.8e-82 309.7 319 53.0
Migut.L01091 Erythranthe guttata HOM05D004993 ORTHO05D008532 1.1e-70 271.2 154 77.3
Psat2g091800 Pisum sativum HOM05D004993 ORTHO05D008532 6.7e-68 261.9 215 60.9
Actinidia38387 Actinidia chinensis HOM05D004993 ORTHO05D008532 4.0e-60 236.1 157 70.1
CBR_g46806 Chara braunii HOM05D004993 ORTHO05D008532 1.3e-55 221.1 267 44.9
Hma1.2p1_0862F.1_g229960 Hydrangea macrophylla HOM05D004993 ORTHO05D008532 5.5e-54 215.7 134 75.4
Cpa.g.c35723 Carica papaya HOM05D004993 ORTHO05D008532 1.8e-52 210.7 134 73.1
Ca_20419_v3 Cicer arietinum L. HOM05D004993 ORTHO05D008532 3.0e-52 209.9 135 72.6
ECA248G2500 Erigeron canadensis HOM05D004993 ORTHO05D008532 2.4e-49 200.3 280 42.9
SEGI_28994 Sequoiadendron giganteum HOM05D004993 ORTHO05D008532 1.4e-44 184.5 136 62.5
Actinidia13671 Actinidia chinensis HOM05D004993 ORTHO05D008532 3.8e-39 166.4 116 69.8
Pp3c27_8380 Physcomitrium patens HOM05D004993 ORTHO05D008532 1.6e-32 144.4 266 34.6
MCO14G082 Micromonas commoda HOM05D004993 ORTHO05D008532 3.9e-31 139.8 293 34.5
Cre10.g442950 Chlamydomonas reinhardtii HOM05D004993 ORTHO05D008532 5.0e-31 139.4 254 33.1
CARHR029040 Cardamine hirsuta HOM05D004993 ORTHO05D008532 1.2e-24 118.2 103 64.1
SEGI_13194 Sequoiadendron giganteum HOM05D004993 ORTHO05D008532 1.1e-17 95.1 98 49.0
Migut.G01033 Erythranthe guttata HOM05D004993 ORTHO05D008532 4.6e-08 63.2 53 50.9


User provided reference genes

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