Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 2008.8 1007 100.0
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1907.5 1007 94.9
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1889.0 1008 93.9
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1885.9 1007 93.7
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1884.4 1007 93.6
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1883.6 1007 93.6
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1878.6 1007 93.4
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1876.7 1007 93.4
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1853.2 1008 92.5
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1840.5 1008 91.6
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1836.6 1015 91.0
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1833.9 1008 90.9
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1711.4 1018 85.1
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1708.0 1010 85.1
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1505.7 1011 73.9
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1496.1 1015 74.7
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1491.1 1015 74.7
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1484.9 1010 74.4
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1482.6 1014 74.5
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1479.9 1015 73.7
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1474.1 1023 72.7
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1473.0 1029 71.8
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1471.8 1015 73.9
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1469.1 1011 73.1
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1464.1 1017 72.9
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1461.4 1013 73.2
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1461.4 1013 73.1
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1454.1 1006 72.8
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1453.0 1014 73.2
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1446.4 1010 72.1
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1446.0 1027 71.5
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1446.0 1010 72.0
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1445.3 1015 71.7
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1444.5 1021 70.8
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1435.6 1017 71.1
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1434.9 1017 71.9
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1433.3 1035 70.5
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1432.5 1021 70.4
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1431.4 1021 70.3
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1429.8 1006 72.7
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1427.2 1035 70.0
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1426.8 1016 72.1
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1426.0 1012 71.7
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1423.3 1046 69.6
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1418.7 1028 70.5
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1415.2 1055 68.2
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1415.2 1017 71.8
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1409.8 968 73.6
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1409.0 1008 71.2
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1408.7 1018 71.7
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1407.9 1019 71.1
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1405.2 1017 70.9
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1402.9 1015 70.3
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1402.5 1035 68.9
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1401.3 1042 68.4
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1398.3 1005 70.2
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1398.3 1012 70.5
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1393.3 1004 69.7
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1391.7 1013 68.7
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1388.2 1004 69.5
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1387.5 1014 70.1
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1387.1 1007 69.3
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1387.1 1011 68.6
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1382.9 1017 69.0
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1379.8 1008 68.7
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1378.2 1007 68.7
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1376.3 1023 68.5
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1373.2 1042 67.1
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1371.7 1012 67.8
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1366.3 1038 68.7
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1361.3 1088 65.4
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1355.9 1011 68.6
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1354.7 973 71.6
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1348.2 981 69.5
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1342.0 1010 67.3
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1338.6 1015 67.4
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1335.5 933 72.9
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1331.6 974 69.2
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1330.5 1033 65.8
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1325.5 1010 67.0
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1316.6 1021 65.6
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1314.3 1003 68.7
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1308.1 1024 65.1
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1304.3 1019 64.5
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1303.5 1020 65.3
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1291.9 1001 65.7
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1285.8 1008 66.8
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1285.8 967 67.9
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1285.4 983 66.8
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1280.4 993 67.6
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1279.6 1006 65.5
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1279.2 1005 67.0
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1275.8 1116 60.8
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1269.2 1015 65.6
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1268.4 1018 63.9
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1266.9 1007 65.3
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1266.1 1008 64.9
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1250.3 1034 63.3
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1245.3 1033 62.7
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1237.6 1051 61.7
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1231.5 949 66.5
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1229.9 1010 63.3
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1219.9 1034 61.8
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1219.5 1002 63.4
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1216.1 1142 56.7
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1210.7 919 68.8
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1202.6 1175 55.3
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1197.2 1045 60.3
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1190.3 1021 62.0
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1182.2 1010 61.8
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1180.6 1011 60.4
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1179.1 1014 60.1
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1169.8 859 69.6
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1143.6 1007 58.0
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1131.7 1021 59.5
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1118.6 986 60.9
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1107.8 897 64.9
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1095.5 863 66.7
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1079.7 942 59.6
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 1.3e-305 1053.1 814 68.7
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 1.4e-286 989.9 945 57.6
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 1.2e-274 950.3 865 58.5
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 7.9e-266 921.0 1045 49.2
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.8e-262 909.8 1044 49.3
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.2e-261 907.1 786 62.5
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 3.6e-250 869.0 981 48.6
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 1.8e-241 840.1 628 70.2
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 6.9e-238 828.2 626 68.7
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.1e-232 810.8 1019 45.3
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 2.8e-231 806.2 1020 45.1
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 3.6e-226 789.3 644 66.0
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.2e-218 764.2 620 63.5
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 2.5e-211 740.0 1224 39.4
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.4e-209 734.2 873 43.9
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 2.1e-178 630.6 392 77.6
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 2.9e-175 620.2 360 80.6
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 9.3e-158 562.0 426 66.7
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 1.6e-149 534.6 412 68.4
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 3.9e-148 530.0 568 53.0
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 5.6e-147 526.2 410 68.3
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 6.0e-141 506.1 534 52.6
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 8.5e-103 379.4 238 79.4
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 2.1e-101 374.8 257 75.1
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 6.3e-98 363.2 205 79.0
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 4.1e-97 360.5 280 66.1
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 2.8e-85 321.2 240 67.5
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 4.1e-81 307.4 838 29.5
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 1.9e-78 298.5 223 71.3
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 2.9e-74 284.6 162 79.6
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 4.3e-70 270.8 150 82.0
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 3.5e-56 224.6 226 53.1
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 1.5e-54 219.2 239 55.2
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 4.9e-50 204.1 220 55.9
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 6.0e-48 197.2 468 31.4
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.3e-47 196.1 148 73.0
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 1.1e-46 193.0 114 72.8
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.4e-41 175.3 90 83.3
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 1.0e-39 169.9 150 56.0
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 3.1e-36 158.3 117 71.8
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 9.0e-36 156.8 191 49.7
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 5.7e-30 137.5 79 75.9
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 9.6e-30 136.7 285 36.8
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 9.6e-30 136.7 285 36.8
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 1.8e-28 132.5 81 84.0
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 2.4e-28 132.1 132 56.8
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 2.0e-27 129.0 77 71.4
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 1.2e-24 119.8 120 57.5
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 4.3e-22 111.3 96 55.2
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 3.7e-21 108.2 78 65.4
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 4.5e-19 101.3 81 71.6
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 3.0e-15 88.6 58 77.6
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 1.1e-14 86.7 71 57.7
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 4.8e-13 81.3 72 68.1
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 3.4e-11 75.1 46 76.1
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.7e-10 72.8 48 70.8
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 3.6e-08 65.1 65 49.2


User provided reference genes

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