Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 7.4e-85 318.2 249 100.0
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 4.8e-84 315.5 249 98.8
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 4.0e-83 312.4 249 97.6
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 4.0e-83 312.4 249 97.6
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 4.0e-83 312.4 249 97.6
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 4.0e-83 312.4 249 97.6
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 4.0e-83 312.4 249 97.6
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 2.6e-82 309.7 249 97.2
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 7.6e-82 308.1 249 96.8
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 1.7e-81 307.0 249 96.4
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 6.5e-81 305.1 249 97.2
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 3.7e-76 289.3 142 95.8
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 1.8e-75 287.0 142 95.1
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 1.8e-75 287.0 142 96.5
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 1.8e-75 287.0 142 96.5
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 1.8e-75 287.0 142 96.5
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 4.1e-75 285.8 142 95.8
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 5.3e-75 285.4 142 94.4
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 6.9e-75 285.0 249 93.2
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 3.4e-74 282.7 249 91.6
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 2.1e-71 273.5 249 88.0
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 3.9e-70 269.2 249 88.0
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 1.1e-69 267.7 249 86.3
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 1.7e-68 263.8 252 86.1
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 2.8e-68 263.1 250 86.4
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 4.8e-68 262.3 248 87.1
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 1.1e-67 261.2 251 86.9
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 1.1e-67 261.2 251 86.1
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 1.4e-67 260.8 248 86.7
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 1.4e-67 260.8 248 86.7
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 3.1e-67 259.6 249 86.7
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 9.1e-67 258.1 250 86.0
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.2e-66 257.7 251 85.7
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.5e-66 257.3 251 85.3
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.5e-66 257.3 251 85.3
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.5e-66 257.3 251 85.3
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 2.0e-66 256.9 258 84.1
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 2.0e-66 256.9 251 86.1
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 2.6e-66 256.5 250 84.8
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 3.4e-66 256.1 256 84.4
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 3.4e-66 256.1 248 85.9
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 5.9e-66 255.4 251 84.9
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 7.7e-66 255.0 250 85.6
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 7.7e-66 255.0 250 85.6
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 7.7e-66 255.0 142 81.7
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 7.7e-66 255.0 251 83.7
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 1.0e-65 254.6 142 81.0
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 1.7e-65 253.8 250 84.4
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 2.2e-65 253.4 249 85.5
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 2.9e-65 253.1 142 81.0
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 3.8e-65 252.7 142 79.6
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 3.8e-65 252.7 248 84.3
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 6.5e-65 251.9 248 84.3
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 1.1e-64 251.1 250 84.4
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 1.4e-64 250.8 251 83.7
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 1.4e-64 250.8 248 83.5
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 1.4e-64 250.8 248 83.5
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 1.4e-64 250.8 256 81.6
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.9e-64 250.4 142 78.9
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 3.2e-64 249.6 248 83.1
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 4.2e-64 249.2 142 78.2
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 4.2e-64 249.2 248 83.5
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 4.2e-64 249.2 248 83.5
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 4.2e-64 249.2 248 83.5
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 5.5e-64 248.8 251 84.5
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 7.2e-64 248.4 250 83.6
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 9.4e-64 248.1 243 86.4
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 1.2e-63 247.7 248 83.1
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 1.6e-63 247.3 248 82.7
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 1.6e-63 247.3 250 83.6
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 1.6e-63 247.3 142 79.6
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 2.1e-63 246.9 248 83.5
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 4.7e-63 245.7 250 83.6
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 6.1e-63 245.4 243 86.0
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 7.9e-63 245.0 248 81.5
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.0e-62 244.6 248 81.5
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 1.0e-62 244.6 248 82.7
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 1.4e-62 244.2 246 83.7
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 1.1e-61 241.1 243 84.4
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 1.5e-61 240.7 142 76.1
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 3.3e-61 239.6 251 80.5
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 4.4e-61 239.2 250 81.6
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.3e-60 237.7 251 79.7
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 1.3e-60 237.7 144 76.4
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 1.7e-60 237.3 248 81.0
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 1.7e-60 237.3 143 76.2
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.2e-60 236.9 251 79.7
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 2.8e-60 236.5 251 79.3
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 6.3e-60 235.3 143 75.5
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 8.2e-60 235.0 142 73.2
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 1.4e-59 234.2 242 83.5
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 2.4e-59 233.4 146 74.7
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 2.0e-58 230.3 143 72.7
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 2.6e-58 229.9 142 71.1
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 3.5e-58 229.6 142 71.1
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 3.5e-58 229.6 142 71.1
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 5.9e-58 228.8 142 72.5
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 5.9e-58 228.8 142 71.1
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 1.3e-57 227.6 142 72.5
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 6.5e-57 225.3 142 71.1
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 1.4e-56 224.2 142 70.4
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 1.9e-56 223.8 142 70.4
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 6.1e-55 218.8 142 69.7
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 6.1e-55 218.8 142 69.7
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 1.0e-54 218.0 142 76.8
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 2.3e-54 216.9 142 69.0
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 6.5e-49 198.7 142 62.7
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 6.1e-47 192.2 144 58.3
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 1.4e-46 191.0 249 77.5
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 5.2e-46 189.1 142 61.3
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 3.3e-45 186.4 142 57.7
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 9.7e-45 184.9 138 59.4
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 2.2e-41 173.7 142 59.2
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 1.2e-39 167.9 116 67.2
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 3.6e-39 166.4 210 79.5
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 5.2e-38 162.5 109 67.0
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 7.5e-37 158.7 140 54.3
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 1.1e-35 154.8 110 67.3
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 3.1e-35 153.3 105 68.6
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 1.4e-30 137.9 113 59.3
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 3.0e-30 136.7 130 49.2
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 8.9e-30 135.2 111 58.6
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 5.0e-17 92.8 144 36.8
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.5e-16 91.3 142 39.4
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 6.2e-15 85.9 142 38.0
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 2.9e-12 77.0 139 80.6
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 3.2e-11 73.6 111 40.5
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 2.7e-10 70.5 119 38.7
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 1.6e-07 61.2 35 68.6
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 1.8e-06 57.8 35 65.7


User provided reference genes

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