Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 6.5e-165 583.9 289 100.0
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 7.5e-145 517.3 285 90.2
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 9.2e-143 510.4 294 87.4
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 7.8e-142 507.3 283 88.0
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 1.5e-140 503.1 285 88.4
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 1.9e-140 502.7 303 84.8
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 2.5e-140 502.3 282 87.9
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 1.4e-138 496.5 294 86.1
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 2.3e-138 495.7 283 86.2
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 2.6e-137 492.3 283 86.2
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 1.4e-135 486.5 287 85.0
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 1.2e-129 466.8 284 82.4
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 2.1e-126 456.1 285 81.4
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 5.6e-124 448.0 302 77.2
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 9.6e-124 447.2 295 77.6
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 5.1e-117 424.9 262 81.7
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 2.8e-115 419.1 271 79.0
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 1.1e-114 417.2 280 72.9
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 6.9e-106 387.9 287 66.2
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 2.0e-105 386.3 287 65.5
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 9.9e-105 384.0 287 66.6
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 1.3e-104 383.6 283 66.4
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 4.2e-103 378.6 282 65.6
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 2.3e-101 372.9 293 63.5
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 2.1e-99 366.3 284 64.1
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 2.8e-99 365.9 337 59.1
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 2.8e-99 365.9 289 63.7
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 2.8e-99 365.9 281 65.1
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 2.0e-97 359.8 294 62.9
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 7.6e-97 357.8 283 62.2
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 1.3e-96 357.1 289 61.9
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 1.9e-95 353.2 282 63.1
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 1.9e-95 353.2 283 59.7
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 2.5e-95 352.8 284 62.0
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 1.6e-94 350.1 291 60.8
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 2.1e-94 349.7 291 58.4
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 7.9e-94 347.8 297 59.3
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 7.9e-94 347.8 287 61.7
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 1.8e-93 346.7 318 57.9
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 1.8e-93 346.7 289 60.9
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 6.7e-93 344.7 289 59.9
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 1.1e-92 344.0 290 59.7
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 1.5e-92 343.6 288 61.1
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 5.7e-92 341.7 288 61.1
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 7.4e-92 341.3 286 59.4
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.6e-91 340.1 289 59.2
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 1.8e-90 336.7 174 93.7
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 3.1e-90 335.9 289 59.2
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 1.2e-89 334.0 280 60.4
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 1.2e-89 334.0 288 58.0
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 1.5e-89 333.6 291 59.5
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 1.3e-88 330.5 306 57.2
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 5.0e-88 328.6 291 57.0
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 6.5e-88 328.2 291 56.0
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 1.1e-87 327.4 289 55.7
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 1.1e-87 327.4 293 56.0
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.4e-87 327.0 280 60.0
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 2.5e-87 326.2 279 59.1
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.2e-87 325.5 286 57.0
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 7.2e-87 324.7 290 57.6
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 9.4e-87 324.3 289 56.4
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 9.4e-87 324.3 319 54.9
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 1.2e-86 323.9 285 57.9
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 4.6e-86 322.0 281 59.4
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 1.4e-85 320.5 291 59.8
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 2.3e-85 319.7 274 58.4
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 2.3e-85 319.7 292 54.1
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 3.0e-85 319.3 269 61.7
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 5.7e-84 315.1 274 58.0
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 7.4e-84 314.7 286 55.6
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 2.2e-83 313.2 288 56.2
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 1.1e-82 310.8 295 53.9
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 1.4e-82 310.5 289 54.3
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 2.4e-82 309.7 282 57.8
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 6.9e-82 308.1 290 53.4
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 3.8e-80 302.4 266 60.9
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 5.5e-79 298.5 282 55.7
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 9.4e-79 297.7 282 55.0
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 4.7e-78 295.4 296 53.0
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 4.7e-78 295.4 217 64.1
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 3.0e-77 292.7 295 51.2
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 3.9e-77 292.4 287 52.3
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 7.4e-76 288.1 288 53.8
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 1.2e-73 280.8 290 51.7
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 4.2e-71 272.3 269 54.3
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 1.2e-70 270.8 307 50.5
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 2.7e-70 269.6 175 72.0
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 6.1e-70 268.5 290 51.0
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 6.3e-67 258.5 286 49.0
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 2.4e-66 256.5 237 55.7
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 5.0e-64 248.8 293 48.1
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 1.5e-63 247.3 173 68.2
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 2.0e-60 236.9 285 46.7
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 4.4e-60 235.7 298 45.0
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 7.5e-60 235.0 274 47.4
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 1.7e-59 233.8 149 74.5
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 1.3e-56 224.2 277 46.2
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 5.5e-55 218.8 181 58.0
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.2e-52 211.1 284 41.5
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 7.0e-50 201.8 284 41.2
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.5e-49 199.5 118 78.0
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.5e-49 199.5 118 78.0
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 4.2e-47 192.6 102 89.2
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 2.1e-46 190.3 290 41.4
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 2.8e-46 189.9 272 40.8
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 8.0e-46 188.3 283 40.6
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 6.3e-43 178.7 285 39.6
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 2.4e-42 176.8 268 42.9
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 3.2e-42 176.4 103 78.6
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 5.4e-42 175.6 301 38.9
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 5.9e-41 172.2 316 37.3
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 1.3e-40 171.0 295 37.3
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 5.0e-40 169.1 278 38.8
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.7e-38 162.5 116 64.7
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 4.7e-38 162.5 322 36.3
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 8.0e-38 161.8 95 81.1
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 6.8e-37 158.7 322 36.0
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 4.4e-36 156.0 322 35.7
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 7.5e-36 155.2 181 47.0
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.3e-35 154.5 214 44.4
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 4.9e-35 152.5 174 46.0
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.4e-35 152.1 209 42.6
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 1.1e-34 151.4 221 41.2
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 1.9e-34 150.6 153 51.0
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 5.4e-26 122.5 102 58.8
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 9.2e-26 121.7 151 41.7
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 7.3e-23 112.1 196 36.7
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 4.7e-22 109.4 113 52.2
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 2.3e-21 107.1 57 87.7
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.6e-20 103.6 152 40.1
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 7.6e-20 102.1 152 39.5
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 6.0e-17 92.4 50 84.0
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 4.4e-12 76.3 50 66.0
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 1.1e-07 61.6 63 52.4
Pp3c14_11090 Physcomitrium patens HOM05D005869 ORTHO05D007229 1.1e-07 61.6 99 40.4
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.5e-07 61.2 95 32.6
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 9.6e-07 58.5 67 47.8
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 1.3e-06 58.2 94 39.4
arahy.Tifrunner.gnm1.ann1.G1CRI5 Arachis hypogaea HOM05D000992 ORTHO05D001928 8.1e-06 55.5 62 50.0


User provided reference genes

Program Settings