Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 1.3e-189 666.4 365 100.0
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 1.5e-161 573.2 372 83.1
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 2.8e-152 542.3 367 75.7
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 2.6e-150 535.8 369 74.8
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.2e-147 526.9 357 79.0
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 1.2e-147 526.9 366 74.6
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 1.6e-147 526.6 356 75.6
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 6.0e-147 524.6 366 74.6
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.5e-145 520.0 358 78.5
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 2.1e-144 516.2 368 73.6
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 4.7e-144 515.0 367 77.9
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 1.1e-143 513.8 367 77.1
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 3.1e-143 512.3 367 77.7
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 4.4e-142 508.4 369 72.6
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 7.1e-140 501.1 369 71.5
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.7e-133 479.9 333 75.1
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 6.2e-128 461.5 371 67.1
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 4.9e-109 398.7 375 62.4
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 5.4e-108 395.2 296 75.0
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 7.9e-99 364.8 361 58.4
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 4.5e-94 349.0 386 54.7
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 6.3e-88 328.6 390 49.7
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 2.9e-85 319.7 385 49.6
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 5.5e-84 315.5 374 50.8
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 3.6e-83 312.8 387 49.1
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 7.9e-83 311.6 386 49.2
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 1.4e-82 310.8 382 49.0
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 6.7e-82 308.5 394 47.7
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 8.8e-82 308.1 395 47.6
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 7.4e-81 305.1 237 74.7
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 2.2e-80 303.5 389 48.1
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 6.3e-80 302.0 389 48.1
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 1.4e-79 300.8 366 48.4
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.4e-79 300.8 380 48.4
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.8e-79 300.4 385 47.8
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 4.1e-79 299.3 387 47.3
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 5.3e-79 298.9 373 48.3
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 1.5e-78 297.4 388 47.7
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 5.9e-78 295.4 382 48.7
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 6.5e-77 292.0 390 46.9
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 5.5e-76 288.9 387 47.8
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 1.6e-75 287.3 377 48.0
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 3.6e-75 286.2 404 46.3
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 7.9e-75 285.0 389 47.3
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.4e-74 284.3 390 46.7
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 6.7e-74 282.0 388 46.9
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 8.8e-74 281.6 392 46.7
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 3.3e-73 279.6 383 46.2
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 2.8e-72 276.6 368 46.2
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 8.2e-72 275.0 371 47.2
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 8.2e-72 275.0 371 47.2
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 8.2e-72 275.0 357 48.2
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.1e-71 274.6 382 45.5
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 1.8e-71 273.9 387 47.5
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 4.1e-71 272.7 384 45.8
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 5.3e-71 272.3 362 45.3
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 9.1e-71 271.6 390 44.6
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 2.2e-69 266.9 402 45.8
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 6.5e-69 265.4 367 46.0
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 8.5e-69 265.0 389 44.0
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.1e-67 260.4 362 48.6
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 3.6e-67 259.6 387 45.5
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 4.7e-67 259.2 378 45.0
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 4.7e-67 259.2 362 44.5
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 5.7e-65 252.3 385 42.6
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 2.8e-64 250.0 379 43.0
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 8.2e-64 248.4 366 42.3
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 5.3e-63 245.7 385 43.9
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 1.2e-62 244.6 383 42.8
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 4.5e-62 242.7 335 45.4
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 7.7e-62 241.9 378 41.0
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 1.7e-61 240.7 374 41.4
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 1.7e-61 240.7 379 42.0
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 2.2e-61 240.4 386 42.0
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 2.2e-61 240.4 374 41.4
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 5.0e-61 239.2 376 43.9
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 6.5e-61 238.8 372 42.2
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.9e-60 237.3 368 41.6
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 2.5e-60 236.9 458 37.1
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 7.2e-60 235.3 362 42.3
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.1e-59 233.8 369 41.5
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 3.4e-57 226.5 438 38.6
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 9.8e-57 224.9 129 81.4
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 1.7e-56 224.2 331 43.2
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 4.8e-56 222.6 366 41.3
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 8.3e-56 221.9 262 51.1
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 3.1e-55 219.9 366 41.3
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 9.1e-55 218.4 359 40.9
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 2.0e-54 217.2 381 38.6
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 3.5e-54 216.5 434 38.5
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 2.2e-53 213.8 383 37.9
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 5.0e-53 212.6 394 37.1
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 1.9e-52 210.7 371 38.5
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 2.3e-50 203.8 362 43.6
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 3.0e-50 203.4 370 38.9
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 4.0e-50 203.0 392 39.3
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 6.8e-50 202.2 210 55.2
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.0e-49 200.7 401 37.9
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 1.3e-48 198.0 359 39.3
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 2.8e-48 196.8 345 38.6
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 2.4e-47 193.7 372 44.1
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 7.0e-47 192.2 370 44.1
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 2.0e-46 190.7 348 44.5
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 1.7e-45 187.6 344 39.0
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 6.6e-45 185.7 344 38.1
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 4.3e-44 183.0 366 35.2
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 6.1e-43 179.1 184 50.5
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 4.0e-42 176.4 371 35.6
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 4.0e-42 176.4 271 45.4
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 8.9e-42 175.3 206 50.0
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 5.7e-41 172.6 184 48.9
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 1.1e-39 168.3 194 48.5
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 5.4e-39 166.0 347 34.3
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 6.6e-37 159.1 358 34.6
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 1.5e-36 157.9 372 35.5
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 5.6e-36 156.0 203 44.3
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 1.5e-33 147.9 336 33.9
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 4.4e-33 146.4 221 44.8
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 5.8e-33 146.0 355 33.8
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 1.3e-32 144.8 189 42.9
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 8.3e-32 142.1 353 31.7
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 5.4e-31 139.4 339 34.2
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 9.2e-31 138.7 295 38.0
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 1.1e-26 125.2 91 65.9
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 1.8e-26 124.4 195 42.1
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 1.5e-25 121.3 119 57.1
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 9.2e-23 112.1 182 42.9
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 5.4e-15 86.3 153 35.9
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.2e-14 85.1 156 33.3
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.2e-14 85.1 190 34.2
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 1.6e-14 84.7 79 59.5
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 3.5e-14 83.6 146 39.7
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 1.0e-13 82.0 148 39.2
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.5e-12 77.4 159 31.4
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 4.3e-12 76.6 158 30.4
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 7.3e-12 75.9 158 31.6
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 1.2e-09 68.6 77 53.2
BolC3t19673H Brassica oleracea HOM05D005715 ORTHO05D007160 1.9e-07 61.2 42 78.6
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 1.2e-06 58.5 229 26.2
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 1.2e-06 58.5 159 30.8
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 1.6e-06 58.2 159 30.8
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 1.6e-06 58.2 159 30.8
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 1.6e-06 58.2 159 30.8
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 1.6e-06 58.2 159 30.8
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 2.7e-06 57.4 87 43.7
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 2.7e-06 57.4 159 30.8
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 2.7e-06 57.4 160 29.4
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 3.5e-06 57.0 159 30.2


User provided reference genes

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