Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 6.2e-147 524.2 292 100.0
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 1.5e-108 396.7 296 73.3
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 2.0e-108 396.4 296 73.3
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 6.3e-107 391.3 295 74.9
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 1.4e-106 390.2 299 75.3
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 1.4e-106 390.2 299 75.3
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 1.4e-106 390.2 299 75.3
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 4.0e-101 372.1 298 73.5
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 5.2e-101 371.7 296 69.9
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 5.7e-92 341.7 296 74.7
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 9.5e-87 324.3 300 67.7
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 7.3e-79 298.1 298 65.1
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 3.6e-78 295.8 300 59.3
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 1.3e-75 287.3 291 63.9
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 3.7e-75 285.8 302 60.9
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 3.7e-75 285.8 291 57.4
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 3.0e-72 276.2 298 61.4
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 3.0e-72 276.2 298 61.4
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 5.0e-72 275.4 298 61.4
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 1.2e-70 270.8 298 60.7
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 1.2e-70 270.8 298 60.7
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 2.8e-70 269.6 307 58.6
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 6.2e-70 268.5 301 60.8
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 2.3e-69 266.5 297 60.9
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-68 264.2 296 59.8
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 2.6e-68 263.1 300 60.3
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 3.4e-68 262.7 300 60.3
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 7.5e-68 261.5 300 60.0
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 1.1e-66 257.7 300 59.7
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 2.0e-65 253.4 298 58.7
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.1e-63 247.7 299 57.5
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 1.2e-57 227.6 289 56.7
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 4.6e-41 172.6 311 44.7
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 1.3e-40 171.0 311 41.5
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.4e-37 161.0 324 43.5
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 1.4e-37 161.0 323 45.5
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 2.0e-36 157.1 333 38.7
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 2.0e-36 157.1 310 41.3
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 3.4e-36 156.4 325 40.6
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 5.8e-36 155.6 312 39.4
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.7e-35 154.1 312 39.1
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 2.2e-35 153.7 324 38.6
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 1.1e-34 151.4 327 42.2
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 5.4e-34 149.1 311 36.0
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 5.4e-34 149.1 310 40.3
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 7.9e-33 145.2 311 40.2
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 9.6e-31 138.3 319 41.4
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 3.1e-29 133.3 297 40.1
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 6.9e-29 132.1 300 38.0
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 2.6e-28 130.2 297 38.0
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 2.2e-27 127.1 298 35.2
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 6.4e-27 125.6 304 34.2
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 8.4e-27 125.2 307 40.1
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.1e-26 124.8 321 34.9
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 2.7e-25 120.2 291 40.2
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 7.9e-25 118.6 306 37.3
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 7.9e-25 118.6 308 33.4
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.0e-24 118.2 301 30.9
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.8e-24 117.5 306 37.3
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 1.8e-24 117.5 307 42.7
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 2.3e-24 117.1 285 34.7
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 2.3e-24 117.1 301 39.2
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 3.9e-24 116.3 299 34.8
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 5.1e-24 115.9 303 31.4
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 6.7e-24 115.5 308 38.0
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 8.7e-24 115.2 314 37.9
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.1e-23 114.8 304 37.2
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 2.5e-23 113.6 314 30.6
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 4.3e-23 112.8 315 38.4
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 5.6e-23 112.5 333 37.8
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 5.6e-23 112.5 292 39.7
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 5.6e-23 112.5 303 42.6
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 5.6e-23 112.5 304 36.8
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 9.6e-23 111.7 314 36.3
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 9.6e-23 111.7 316 30.4
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.6e-22 110.9 311 33.1
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.1e-22 110.5 322 38.5
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.7e-22 109.8 308 37.3
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 8.2e-22 108.6 322 38.2
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.1e-21 108.2 304 29.3
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.1e-21 108.2 311 32.2
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 1.4e-21 107.8 321 38.0
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.4e-21 107.8 322 37.9
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 1.4e-21 107.8 298 34.2
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.8e-21 107.5 314 30.9
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 2.4e-21 107.1 295 29.8
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 5.3e-21 105.9 295 29.5
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 5.3e-21 105.9 298 38.6
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 6.9e-21 105.5 297 36.7
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 6.9e-21 105.5 301 37.2
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 9.0e-21 105.1 314 37.6
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 1.5e-20 104.4 331 36.3
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.5e-20 104.4 318 29.2
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 1.5e-20 104.4 298 34.9
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.0e-20 104.0 309 30.7
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 2.0e-20 104.0 307 32.2
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 2.6e-20 103.6 309 33.0
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 3.4e-20 103.2 305 30.2
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 5.8e-20 102.4 186 39.2
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 2.9e-19 100.1 317 34.1
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 3.8e-19 99.8 178 40.4
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 6.5e-19 99.0 301 32.2
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.1e-18 98.2 263 35.7
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 1.4e-18 97.8 309 30.1
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.4e-18 97.8 307 37.8
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.9e-18 97.4 318 28.3
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 1.9e-18 97.4 308 36.0
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 2.7e-17 93.6 292 36.3
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.7e-17 93.6 276 31.9
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 4.6e-17 92.8 312 28.5
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 8.7e-16 88.6 308 33.8
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 1.5e-15 87.8 308 36.4
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 1.9e-15 87.4 304 29.6
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 4.3e-15 86.3 276 32.6
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 5.7e-15 85.9 308 32.8
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 5.7e-15 85.9 306 28.1
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 5.7e-15 85.9 309 29.4
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 1.3e-14 84.7 294 29.9
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 3.7e-14 83.2 286 31.5
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 6.3e-14 82.4 299 29.4
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 1.1e-13 81.6 305 31.5
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 1.4e-13 81.3 290 28.6
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 4.1e-13 79.7 303 28.7
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 5.3e-13 79.3 160 35.6
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.5e-12 77.8 309 27.5
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 3.4e-12 76.6 191 33.0
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 2.2e-11 73.9 126 37.3
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 2.9e-11 73.6 279 27.6
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 6.5e-11 72.4 148 34.5
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 8.5e-11 72.0 167 33.5
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 2.5e-10 70.5 289 27.0
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 7.2e-10 68.9 282 27.0
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.2e-09 68.2 278 28.8
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 2.1e-09 67.4 156 32.1
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 4.6e-09 66.2 318 33.3
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 1.3e-08 64.7 306 26.8
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 1.3e-08 64.7 146 34.2
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 3.9e-08 63.2 157 31.8
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 5.1e-08 62.8 261 37.9
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 5.1e-08 62.8 261 29.1
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 5.1e-08 62.8 168 29.2
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 8.7e-08 62.0 248 33.5
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.3e-07 60.1 88 40.9
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 9.7e-07 58.5 81 48.1
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 1.6e-06 57.8 131 31.3
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 8.2e-06 55.5 253 35.6


User provided reference genes

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