Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 5.3e-114 414.5 223 100.0
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 3.8e-88 328.6 194 88.1
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 4.7e-86 321.6 194 85.6
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 2.3e-85 319.3 196 85.2
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 8.3e-83 310.8 197 84.8
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 8.3e-83 310.8 198 84.3
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.1e-82 310.5 198 83.8
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 1.4e-82 310.1 200 83.5
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 1.6e-81 306.6 197 83.2
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 4.4e-76 288.5 197 80.2
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.7e-75 286.6 194 78.4
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 2.2e-75 286.2 198 76.3
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 4.9e-75 285.0 193 76.7
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 1.2e-73 280.4 209 71.3
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 1.5e-71 273.5 196 74.5
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 1.9e-71 273.1 174 83.3
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 7.3e-71 271.2 196 74.5
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 1.6e-70 270.0 196 72.4
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 3.6e-70 268.9 193 72.5
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.8e-69 266.5 195 74.4
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 1.8e-69 266.5 185 76.2
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.8e-69 266.5 196 72.4
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 3.0e-69 265.8 196 70.9
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 4.0e-69 265.4 196 71.9
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 6.8e-69 264.6 194 71.1
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 8.9e-69 264.2 182 75.3
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 8.9e-69 264.2 194 72.2
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 1.2e-68 263.8 196 71.9
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 2.0e-68 263.1 195 74.9
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 2.0e-68 263.1 197 68.0
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 3.4e-68 262.3 196 71.9
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 3.4e-68 262.3 195 72.3
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 7.5e-68 261.2 203 69.5
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 9.8e-68 260.8 196 71.4
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 1.7e-67 260.0 195 71.8
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 2.2e-67 259.6 194 71.6
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 2.9e-67 259.2 192 69.8
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 3.7e-67 258.8 197 70.1
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 3.7e-67 258.8 194 70.1
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 3.7e-67 258.8 197 73.6
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 3.7e-67 258.8 196 69.4
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 3.7e-67 258.8 196 69.9
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 3.7e-67 258.8 196 70.4
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 3.7e-67 258.8 219 63.0
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 1.1e-66 257.3 194 69.6
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 1.4e-66 256.9 180 73.9
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 1.4e-66 256.9 196 69.4
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 2.4e-66 256.1 190 71.6
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 3.2e-66 255.8 196 68.9
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 4.1e-66 255.4 195 69.2
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 4.1e-66 255.4 200 67.0
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 4.1e-66 255.4 202 65.8
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 4.1e-66 255.4 202 65.8
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 5.4e-66 255.0 196 68.9
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 5.4e-66 255.0 202 65.8
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 9.2e-66 254.2 190 71.6
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 1.2e-65 253.8 196 70.4
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 2.0e-65 253.1 192 70.8
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 2.7e-65 252.7 191 71.2
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 4.6e-65 251.9 192 69.3
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 5.9e-65 251.5 212 64.6
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 1.0e-64 250.8 194 67.0
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 1.0e-64 250.8 192 69.8
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 1.3e-64 250.4 192 67.7
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 1.7e-64 250.0 155 78.7
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.3e-64 249.6 200 66.0
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 3.0e-64 249.2 196 66.8
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 3.9e-64 248.8 194 68.0
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.5e-63 246.9 194 67.0
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 1.9e-63 246.5 183 69.4
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 2.5e-63 246.1 158 75.9
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.5e-63 246.1 192 67.2
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 4.3e-63 245.4 192 65.6
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 5.6e-63 245.0 194 66.5
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 7.3e-63 244.6 194 66.5
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 7.3e-63 244.6 158 75.3
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 7.3e-63 244.6 195 67.7
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 7.3e-63 244.6 197 66.0
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 7.3e-63 244.6 201 63.7
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 9.5e-63 244.2 192 65.1
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 1.2e-62 243.8 193 65.3
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 1.2e-62 243.8 193 65.3
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 2.8e-62 242.7 195 65.1
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 4.7e-62 241.9 192 64.1
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.0e-61 240.7 180 66.7
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 1.0e-61 240.7 183 64.5
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 2.3e-61 239.6 181 67.4
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 3.1e-61 239.2 206 62.6
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 5.2e-61 238.4 195 64.1
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 6.8e-61 238.0 185 65.9
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 8.9e-61 237.7 192 63.5
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 8.9e-61 237.7 169 69.2
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 1.5e-60 236.9 192 63.0
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 1.5e-60 236.9 192 61.5
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 1.5e-60 236.9 169 72.2
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 4.4e-60 235.3 192 63.5
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 4.4e-60 235.3 185 65.4
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 7.5e-60 234.6 173 68.2
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 9.8e-60 234.2 171 71.3
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 2.2e-59 233.0 192 63.5
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 2.9e-59 232.6 194 62.9
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 4.9e-59 231.9 170 71.2
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 6.4e-59 231.5 195 62.6
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 6.4e-59 231.5 156 71.8
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 8.3e-59 231.1 153 75.2
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 1.1e-58 230.7 158 71.5
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 1.9e-58 229.9 198 61.6
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 7.0e-58 228.0 156 73.1
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 2.0e-57 226.5 195 61.5
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 3.5e-57 225.7 206 57.8
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 4.6e-57 225.3 178 68.0
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 1.7e-56 223.4 199 58.8
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 2.3e-56 223.0 192 60.9
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 3.0e-56 222.6 208 59.1
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 6.6e-56 221.5 194 58.8
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 1.5e-55 220.3 171 65.5
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 2.8e-54 216.1 150 78.7
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 3.6e-54 215.7 193 57.0
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 4.0e-53 212.2 195 56.4
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 6.8e-53 211.5 170 65.9
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 1.5e-52 210.3 192 58.9
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 2.9e-51 206.1 170 62.9
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 1.1e-50 204.1 258 49.2
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 1.4e-50 203.8 181 61.3
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 9.2e-50 201.1 198 58.6
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 4.6e-49 198.7 173 59.0
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 4.7e-46 188.7 155 59.4
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 6.8e-45 184.9 180 56.1
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 2.0e-44 183.3 175 54.3
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 6.4e-43 178.3 195 53.3
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.1e-42 177.6 111 76.6
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 1.4e-42 177.2 195 52.8
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 1.3e-40 170.6 237 46.4
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 5.1e-40 168.7 140 66.4
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 3.3e-39 166.0 104 74.0
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 9.6e-39 164.5 156 52.6
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 1.6e-38 163.7 132 61.4
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 5.2e-37 158.7 168 52.4
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 1.5e-36 157.1 144 61.1
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.5e-36 157.1 179 49.7
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 2.0e-36 156.8 120 70.8
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 5.8e-36 155.2 130 61.5
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 5.8e-36 155.2 130 61.5
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 9.9e-36 154.5 189 49.2
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 2.2e-35 153.3 146 50.0
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 3.8e-35 152.5 156 53.2
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.9e-35 152.1 130 62.3
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.1e-34 151.0 129 58.9
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.4e-34 150.6 130 60.8
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.3e-32 144.1 144 47.9
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 3.9e-32 142.5 140 47.9
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 9.6e-31 137.9 82 76.8
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 1.3e-30 137.5 103 60.2
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.9e-26 123.6 118 57.6
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 3.6e-22 109.4 188 42.0
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 3.1e-21 106.3 85 71.8
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 3.2e-18 96.3 86 60.5
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 5.6e-15 85.5 58 69.0
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.5e-10 70.1 104 47.1
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 7.9e-09 65.1 174 33.3
SpUn0008_0090 Schrenkiella parvula HOM05D000004 ORTHO05D027095 8.7e-08 61.6 43 72.1


User provided reference genes

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