Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 8.2e-61 236.9 120 100.0
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 6.9e-52 207.2 114 89.5
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 2.0e-51 205.7 114 89.5
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 2.0e-51 205.7 114 89.5
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 5.9e-51 204.1 116 88.8
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 7.7e-51 203.8 114 88.6
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 2.2e-50 202.2 116 87.9
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 2.2e-50 202.2 114 87.7
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 4.2e-49 198.0 114 86.0
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 9.4e-49 196.8 114 86.0
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 2.1e-48 195.7 114 85.1
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 3.6e-48 194.9 114 86.8
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 1.4e-47 193.0 114 85.1
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 2.3e-47 192.2 114 84.2
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 4.3e-46 188.0 114 82.5
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 2.2e-45 185.7 113 84.1
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 2.8e-45 185.3 114 82.5
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 9.1e-44 180.3 114 80.7
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 1.8e-36 156.0 114 71.1
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 5.3e-36 154.5 114 70.2
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 3.5e-35 151.8 115 70.4
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 7.2e-33 144.1 114 66.7
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 9.1e-28 127.1 114 60.5
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 2.6e-27 125.6 114 57.9
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 4.5e-27 124.8 115 55.7
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 4.5e-27 124.8 114 57.0
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 1.7e-26 122.9 114 56.1
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 3.8e-26 121.7 114 56.1
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 2.5e-25 119.0 114 56.1
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 2.5e-25 119.0 116 57.8
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 5.5e-25 117.9 114 54.4
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 4.7e-24 114.8 111 53.2
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 4.7e-24 114.8 114 53.5
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 6.1e-24 114.4 93 60.2
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 6.1e-24 114.4 113 53.1
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 1.0e-23 113.6 114 52.6
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 4.0e-23 111.7 116 56.9
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 1.2e-22 110.2 94 57.4
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 4.4e-22 108.2 115 51.3
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 7.5e-22 107.5 93 54.8
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 9.7e-22 107.1 93 58.1
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 9.7e-22 107.1 116 54.3
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 1.7e-21 106.3 114 50.9
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 1.7e-21 106.3 114 50.9
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 1.7e-21 106.3 114 48.2
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.7e-21 106.3 114 48.2
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 2.2e-21 105.9 92 57.6
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.8e-21 105.5 114 48.2
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 4.8e-21 104.8 110 52.7
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 1.4e-20 103.2 112 50.0
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 1.8e-20 102.8 117 52.1
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 4.1e-20 101.7 114 46.5
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 7.0e-20 100.9 93 57.0
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 2.0e-19 99.4 117 49.6
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 2.0e-19 99.4 117 49.6
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.7e-19 99.0 115 47.8
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.7e-19 99.0 115 47.8
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 3.5e-19 98.6 118 50.8
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 3.5e-19 98.6 128 50.0
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 4.5e-19 98.2 114 45.6
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 7.7e-19 97.4 95 54.7
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 7.7e-19 97.4 97 52.6
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 1.0e-18 97.1 117 50.4
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.0e-18 97.1 111 49.5
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 2.2e-18 95.9 116 49.1
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 2.9e-18 95.5 94 56.4
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 2.9e-18 95.5 114 50.0
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 2.9e-18 95.5 114 48.2
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 8.5e-18 94.0 116 50.0
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.5e-17 93.2 116 48.3
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 2.5e-17 92.4 72 61.1
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 3.2e-17 92.0 115 48.7
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 4.2e-17 91.7 119 46.2
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 4.2e-17 91.7 119 47.9
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 7.2e-17 90.9 117 47.9
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 7.2e-17 90.9 95 52.6
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 9.4e-17 90.5 114 43.9
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 1.2e-16 90.1 114 48.2
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 1.2e-16 90.1 70 62.9
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.2e-16 90.1 117 47.9
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 2.1e-16 89.4 99 50.5
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 4.7e-16 88.2 94 53.2
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 4.7e-16 88.2 116 49.1
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 4.7e-16 88.2 114 44.7
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 6.1e-16 87.8 74 63.5
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 6.1e-16 87.8 117 45.3
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 8.0e-16 87.4 98 48.0
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 8.0e-16 87.4 116 47.4
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 1.4e-15 86.7 88 50.0
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.4e-15 86.7 97 50.5
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.8e-15 86.3 93 53.8
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 2.3e-15 85.9 115 47.0
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 2.3e-15 85.9 114 46.5
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 2.3e-15 85.9 96 51.0
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 4.0e-15 85.1 115 46.1
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 5.2e-15 84.7 116 48.3
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 5.2e-15 84.7 96 51.0
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 3.4e-14 82.0 101 49.5
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 5.7e-14 81.3 96 44.8
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 9.8e-14 80.5 44 84.1
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 1.7e-13 79.7 118 43.2
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 1.7e-13 79.7 114 40.4
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 1.7e-13 79.7 70 55.7
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 1.7e-13 79.7 114 39.5
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 2.2e-13 79.3 114 41.2
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 3.7e-13 78.6 93 47.3
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 6.3e-13 77.8 104 48.1
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 8.3e-13 77.4 98 42.9
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 8.3e-13 77.4 82 53.7
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 1.1e-12 77.0 83 47.0
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.8e-12 76.3 90 50.0
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 1.8e-12 76.3 83 48.2
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 2.4e-12 75.9 46 71.7
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 3.1e-12 75.5 109 41.3
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 4.1e-12 75.1 113 40.7
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 4.1e-12 75.1 113 40.7
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 4.1e-12 75.1 65 61.5
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 1.2e-11 73.6 98 46.9
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.6e-11 73.2 133 39.1
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.6e-11 73.2 96 42.7
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 2.0e-11 72.8 48 72.9
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 2.0e-11 72.8 45 71.1
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 3.5e-11 72.0 46 69.6
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 4.5e-11 71.6 35 91.4
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 4.5e-11 71.6 47 72.3
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 5.9e-11 71.2 48 70.8
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.0e-10 70.5 96 44.8
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.0e-10 70.5 105 41.9
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.3e-10 70.1 97 44.3
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 2.3e-10 69.3 100 42.0
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 2.3e-10 69.3 91 42.9
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 1.5e-09 66.6 37 78.4
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 1.9e-09 66.2 163 33.7
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.9e-09 66.2 44 70.5
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 4.2e-09 65.1 36 77.8
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 5.5e-09 64.7 38 76.3
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 5.5e-09 64.7 36 80.6
COL.COLO4_27990 Corchorus olitorius HOM05D004542 ORTHO05D005380 5.2e-07 58.2 84 42.9
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 5.2e-07 58.2 36 72.2
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 2.6e-06 55.8 26 92.3
Ah.15g093720 Amaranthus hybridus HOM05D000143 ORTHO05D000072 4.4e-06 55.1 26 92.3


User provided reference genes

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