Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 7.4e-153 543.9 285 100.0
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 5.7e-145 517.7 285 94.0
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 5.7e-145 517.7 285 94.0
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 5.7e-145 517.7 285 94.0
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 7.4e-145 517.3 285 94.0
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 2.2e-144 515.8 285 93.0
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 2.2e-144 515.8 285 93.0
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 2.2e-144 515.8 285 93.0
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 2.8e-144 515.4 285 93.7
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 3.1e-143 511.9 285 91.9
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.2e-142 510.0 285 93.0
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 3.4e-142 508.4 285 90.9
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 1.3e-141 506.5 285 91.2
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 3.8e-141 505.0 285 91.6
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 6.1e-139 497.7 285 89.5
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 6.3e-136 487.6 277 89.2
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 3.1e-135 485.3 284 89.4
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 2.0e-134 482.6 285 86.3
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 2.4e-119 432.6 286 78.3
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 3.4e-105 385.6 285 71.6
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 7.5e-105 384.4 251 80.1
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 1.7e-104 383.3 285 71.2
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 1.9e-103 379.8 285 71.2
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 7.0e-103 377.9 285 70.9
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 2.0e-102 376.3 282 69.5
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 2.7e-102 375.9 285 70.2
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.0e-101 374.0 285 69.8
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 8.6e-101 370.9 276 70.7
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 1.5e-100 370.2 289 66.8
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 1.5e-100 370.2 280 69.6
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 1.9e-100 369.8 280 69.6
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 2.5e-100 369.4 281 67.6
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 4.3e-100 368.6 282 68.1
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 5.6e-100 368.2 280 69.3
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 5.6e-100 368.2 286 65.7
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 4.7e-99 365.2 282 68.1
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 8.0e-99 364.4 257 72.8
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 1.1e-98 364.0 285 66.7
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 2.3e-98 362.8 286 67.1
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.5e-97 360.1 285 67.0
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 1.5e-97 360.1 284 65.1
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 5.8e-97 358.2 286 66.1
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 7.5e-97 357.8 282 68.1
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.3e-96 357.1 284 65.8
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 2.2e-96 356.3 284 65.5
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 2.9e-96 355.9 284 64.4
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 3.7e-96 355.5 284 65.1
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 6.4e-96 354.8 285 66.7
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 1.1e-95 354.0 279 67.0
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 1.9e-95 353.2 283 66.8
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.2e-95 352.4 287 65.9
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 3.2e-95 352.4 285 64.9
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 3.2e-95 352.4 285 64.9
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 3.2e-95 352.4 283 65.4
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 3.2e-95 352.4 284 65.1
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 4.1e-95 352.1 286 66.4
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 5.4e-95 351.7 285 64.2
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 9.2e-95 350.9 284 64.4
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.2e-94 350.5 279 67.4
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 2.1e-94 349.7 287 65.2
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 2.7e-94 349.4 287 64.8
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 2.7e-94 349.4 287 63.8
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 3.5e-94 349.0 280 66.4
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 3.5e-94 349.0 285 63.9
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 1.0e-93 347.4 288 63.9
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 1.3e-93 347.1 287 65.5
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 2.3e-93 346.3 284 65.1
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 3.9e-93 345.5 226 76.1
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 5.0e-93 345.1 278 65.5
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 5.0e-93 345.1 293 61.8
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 8.6e-93 344.4 281 64.1
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 8.6e-93 344.4 280 64.6
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.1e-92 344.0 271 67.2
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.5e-92 343.6 290 63.1
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 2.5e-92 342.8 278 64.7
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 2.5e-92 342.8 285 66.0
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 2.5e-92 342.8 287 64.1
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 2.5e-92 342.8 293 61.8
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 3.3e-92 342.4 284 63.7
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 3.3e-92 342.4 284 65.1
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 5.6e-92 341.7 271 66.8
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 9.5e-92 340.9 286 64.7
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 9.5e-92 340.9 286 65.4
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 1.2e-91 340.5 293 62.1
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 2.8e-91 339.3 277 64.6
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.6e-91 339.0 289 64.0
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 6.2e-91 338.2 244 70.5
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 6.2e-91 338.2 227 75.8
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 3.1e-90 335.9 243 71.2
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 3.1e-90 335.9 285 64.2
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 4.0e-90 335.5 277 63.9
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 8.9e-90 334.3 296 62.8
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 9.9e-89 330.9 278 62.9
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 9.9e-89 330.9 279 65.6
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 1.7e-88 330.1 321 58.3
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 3.7e-88 328.9 285 63.5
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 6.4e-88 328.2 226 71.2
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 8.3e-88 327.8 226 71.7
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 9.2e-87 324.3 283 61.1
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 9.2e-87 324.3 278 62.6
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 6.6e-85 318.2 246 66.3
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 8.6e-85 317.8 216 74.1
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 8.6e-85 317.8 281 60.5
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 1.5e-84 317.0 278 61.9
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.9e-84 316.6 283 59.7
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 4.7e-83 312.0 278 61.9
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 8.1e-83 311.2 291 60.1
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.8e-82 310.1 285 60.4
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 4.0e-82 308.9 253 62.8
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 2.9e-80 302.8 283 60.1
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 4.9e-80 302.0 228 68.4
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 7.8e-78 294.7 241 63.5
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 3.9e-77 292.4 233 62.2
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 3.3e-76 289.3 283 57.2
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 9.6e-76 287.7 234 63.7
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 2.8e-75 286.2 234 63.2
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.6e-73 279.6 287 55.4
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 7.1e-71 271.6 215 67.0
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 6.6e-69 265.0 300 47.0
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 6.2e-67 258.5 295 48.8
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 8.1e-67 258.1 237 56.5
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.8e-66 256.9 262 51.9
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.5e-60 237.3 197 55.8
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.3e-59 234.2 197 55.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.6e-59 233.8 197 54.8
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.7e-59 232.6 197 54.8
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 5.8e-57 225.3 210 60.0
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 9.6e-52 208.0 270 47.8
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.0e-50 202.6 150 66.0
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.8e-48 196.1 136 70.6
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.8e-48 196.1 137 73.0
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.5e-48 195.3 197 48.7
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.1e-47 194.5 246 50.4
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.5e-47 193.4 212 52.8
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.1e-44 184.5 225 48.9
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.4e-37 161.0 171 53.2
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 3.7e-35 152.9 100 78.0
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 3.7e-35 152.9 100 78.0
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-34 151.4 178 46.6
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.2e-31 139.4 182 41.8
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.0e-28 130.6 118 60.2
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.6e-28 130.2 199 37.2
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 1.3e-27 127.9 83 77.1
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 1.0e-24 118.2 225 34.2
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 5.0e-24 115.9 76 73.7
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.1e-22 110.5 206 38.8
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 4.7e-22 109.4 217 30.9
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 5.2e-21 105.9 190 41.1
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.1e-18 96.7 67 68.7
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.2e-17 94.7 65 67.7
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 1.6e-17 94.4 51 86.3
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.6e-17 94.4 65 67.7
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 3.5e-17 93.2 91 51.6
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.7e-16 90.9 60 70.0
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.1e-14 84.0 66 63.6
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 4.7e-14 82.8 59 74.6
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 4.7e-14 82.8 59 74.6
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 5.2e-13 79.3 61 68.9
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 1.5e-12 77.8 90 50.0
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.4e-12 76.6 53 67.9
BolC6t36313H Brassica oleracea HOM05D004641 ORTHO05D022007 2.0e-09 67.4 44 77.3
BraA03t14352Z Brassica rapa HOM05D004641 ORTHO05D022007 5.9e-09 65.9 46 71.7


User provided reference genes

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