Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 1.4e-90 336.3 176 100.0
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 3.7e-70 268.5 180 82.2
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 4.1e-69 265.0 180 81.7
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 4.1e-69 265.0 180 81.7
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 4.1e-69 265.0 180 81.7
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 2.7e-68 262.3 177 81.4
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 2.7e-68 262.3 177 81.4
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 6.3e-62 241.1 180 76.1
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 6.3e-62 241.1 180 76.1
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-61 240.4 180 76.1
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 1.1e-61 240.4 180 76.1
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 3.5e-60 235.3 181 76.8
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 3.3e-50 202.2 183 69.4
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 3.1e-48 195.7 182 67.6
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 2.1e-41 172.9 180 61.7
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 2.6e-39 166.0 184 57.6
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 3.4e-39 165.6 184 57.6
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 3.4e-39 165.6 184 57.6
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 2.2e-38 162.9 188 58.0
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 2.2e-38 162.9 188 58.0
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 2.2e-38 162.9 188 58.0
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 2.2e-38 162.9 188 58.0
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 2.9e-38 162.5 187 58.3
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 2.9e-38 162.5 184 57.1
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 2.9e-38 162.5 184 57.1
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 4.9e-38 161.8 188 57.4
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 4.9e-38 161.8 185 56.8
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 4.9e-38 161.8 188 57.4
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 3.2e-37 159.1 185 56.8
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 6.0e-36 154.8 184 55.4
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 6.0e-36 154.8 185 54.6
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 3.9e-35 152.1 184 54.3
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 3.9e-35 152.1 188 54.3
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 1.2e-33 147.1 184 54.3
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 2.8e-33 146.0 181 55.2
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 5.2e-32 141.7 178 54.5
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 2.9e-30 136.0 198 48.5
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.4e-29 133.7 187 49.7
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 1.1e-26 124.0 204 46.1
BNapus_Darmor_BZH_scaffold_256p00010 Brassica napus HOM05D005097 ORTHO05D006186 1.9e-26 123.2 165 52.1
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 7.3e-26 121.3 123 58.5
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 2.0e-23 113.2 86 70.9
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 3.4e-23 112.5 181 48.1
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 1.9e-21 106.7 203 44.8
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 5.4e-21 105.1 178 49.4
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 1.6e-20 103.6 82 74.4
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 7.8e-20 101.3 202 42.6
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 1.0e-19 100.9 194 41.8
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 1.9e-18 96.7 166 46.4
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 4.3e-18 95.5 136 54.4
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.3e-18 95.5 182 42.3
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.3e-18 95.5 191 40.3
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 4.3e-18 95.5 191 40.3
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 5.6e-18 95.1 191 39.8
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 7.3e-18 94.7 186 40.3
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.6e-17 93.6 172 45.3
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.1e-17 93.2 198 39.9
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 2.8e-17 92.8 174 43.7
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 2.8e-17 92.8 185 41.6
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 3.6e-17 92.4 185 41.1
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 4.8e-17 92.0 184 44.0
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 8.1e-17 91.3 180 43.3
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 1.1e-16 90.9 189 43.4
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.8e-16 90.1 202 40.6
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.8e-16 90.1 194 42.3
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 2.4e-16 89.7 172 41.9
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 3.1e-16 89.4 187 43.9
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 3.1e-16 89.4 181 41.4
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 3.1e-16 89.4 202 39.1
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 5.3e-16 88.6 217 37.8
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 9.0e-16 87.8 149 45.0
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.2e-15 87.4 192 41.7
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 1.5e-15 87.0 193 36.3
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 2.0e-15 86.7 191 39.8
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 2.0e-15 86.7 183 39.9
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 2.0e-15 86.7 197 39.6
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 2.6e-15 86.3 159 40.3
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 3.4e-15 85.9 183 38.8
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 7.6e-15 84.7 192 40.1
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 9.9e-15 84.3 195 37.9
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.3e-14 84.0 180 40.6
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 1.7e-14 83.6 182 39.6
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 1.7e-14 83.6 182 42.3
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 2.2e-14 83.2 135 43.7
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 2.2e-14 83.2 183 39.3
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 3.8e-14 82.4 188 41.5
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 3.8e-14 82.4 202 41.1
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 3.8e-14 82.4 181 36.5
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 4.9e-14 82.0 181 36.5
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 6.4e-14 81.6 180 40.0
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 8.4e-14 81.3 195 41.0
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.4e-13 80.5 177 39.5
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.9e-13 80.1 144 43.8
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.9e-13 80.1 193 40.4
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 2.4e-13 79.7 182 39.6
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 3.2e-13 79.3 176 41.5
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 3.2e-13 79.3 183 39.3
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 4.2e-13 79.0 188 36.7
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 5.4e-13 78.6 135 45.2
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 9.3e-13 77.8 173 34.7
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 1.6e-12 77.0 195 38.5
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 2.1e-12 76.6 171 40.9
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 2.7e-12 76.3 197 39.1
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 4.6e-12 75.5 185 37.8
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 4.6e-12 75.5 176 35.2
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 7.9e-12 74.7 198 37.9
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.0e-11 74.3 147 41.5
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 1.8e-11 73.6 195 37.4
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 1.8e-11 73.6 187 38.0
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 1.8e-11 73.6 180 35.6
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 2.3e-11 73.2 190 38.4
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 2.3e-11 73.2 206 36.4
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 2.3e-11 73.2 187 34.2
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 2.3e-11 73.2 159 38.4
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 3.0e-11 72.8 189 38.1
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 3.0e-11 72.8 172 36.6
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 3.0e-11 72.8 192 37.5
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 3.9e-11 72.4 183 37.2
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 6.7e-11 71.6 175 36.6
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 8.7e-11 71.2 135 40.0
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 1.1e-10 70.9 195 35.4
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 2.5e-10 69.7 207 34.8
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 3.3e-10 69.3 182 34.1
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 5.6e-10 68.6 182 37.9
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 9.6e-10 67.8 87 49.4
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 1.6e-09 67.0 166 38.0
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 2.1e-09 66.6 177 37.3
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 2.8e-09 66.2 135 38.5
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 6.2e-09 65.1 172 36.6
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.1e-08 64.3 180 35.6
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 1.4e-08 63.9 78 48.7
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 1.4e-08 63.9 188 34.6
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 1.4e-08 63.9 173 39.9
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.8e-08 63.5 176 34.7
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 4.0e-08 62.4 120 37.5
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 9.0e-08 61.2 158 34.2
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 9.0e-08 61.2 180 36.1
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 9.0e-08 61.2 179 32.4
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.5e-07 60.5 173 34.1
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 5.8e-07 58.5 182 34.6
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 2.2e-06 56.6 186 31.2


User provided reference genes

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