Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g21760 Schrenkiella parvula HOM05D007217 ORTHO05D009092 2.4e-66 255.4 130 100.0
AT1G80245 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 6.0e-41 171.0 125 68.0
AL2G41250 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 1.3e-40 169.9 126 66.7
Aa31LG4G550 Aethionema arabicum HOM05D002649 ORTHO05D002838 3.9e-40 168.3 126 70.6
Sp5g35560 Schrenkiella parvula HOM05D007217 ORTHO05D009092 1.1e-37 160.2 119 68.1
CARHR074240 Cardamine hirsuta HOM05D007217 ORTHO05D009092 1.4e-37 159.8 125 68.0
AL7G47090 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 2.0e-36 156.0 126 65.1
Carub.0007s3329 Capsella rubella HOM05D007217 ORTHO05D009092 2.4e-34 149.1 119 63.0
AT4G00695 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 4.1e-34 148.3 138 59.4
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 2.3e-32 142.5 128 58.6
BcaC03g15989 Brassica carinata HOM05D007217 ORTHO05D009092 1.5e-31 139.8 128 57.8
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 1.9e-31 139.4 128 57.8
Thhalv10019705m.g Eutrema salsugineum HOM05D007217 ORTHO05D009092 2.5e-31 139.0 107 67.3
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 1.6e-30 136.3 129 55.0
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 4.7e-30 134.8 128 57.0
THA.LOC104808222 Tarenaya hassleriana HOM05D007217 ORTHO05D009092 8.1e-30 134.0 126 57.9
MELO3C015565.2 Cucumis melo HOM05D007217 ORTHO05D009092 2.2e-27 125.9 117 52.1
ClCG07G002120 Citrullus lanatus HOM05D007217 ORTHO05D009092 1.4e-26 123.2 124 46.0
CsaV3_3G030060 Cucumis sativus L. HOM05D007217 ORTHO05D009092 7.1e-26 120.9 129 46.5
MELO3C022720.2 Cucumis melo HOM05D007217 ORTHO05D009092 3.5e-25 118.6 123 47.2
CsaV3_4G011770 Cucumis sativus L. HOM05D007217 ORTHO05D009092 7.8e-25 117.5 124 47.6
Thecc.06G135800 Theobroma cacao HOM05D007217 ORTHO05D009092 7.8e-25 117.5 125 49.6
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 1.0e-24 117.1 145 48.3
Cpa.g.sc64.50 Carica papaya HOM05D007217 ORTHO05D009092 2.3e-24 115.9 124 47.6
CiPaw.10G112300 Carya illinoinensis HOM05D007217 ORTHO05D009092 5.1e-24 114.8 128 49.2
Atru.chr10.619 Acer truncatum HOM05D007217 ORTHO05D009092 1.9e-23 112.8 130 49.2
Sed0002565 Sechium edule HOM05D007217 ORTHO05D009092 2.5e-23 112.5 126 45.2
GSVIVG01019606001 Vitis vinifera HOM05D007217 ORTHO05D009092 9.5e-23 110.5 118 46.6
Duzib235G1460 Durio zibethinus HOM05D007217 ORTHO05D009092 1.2e-22 110.2 125 48.8
QL05p062902 Quercus lobata HOM05D007217 ORTHO05D009092 1.6e-22 109.8 119 48.7
Gohir.A06G140100 Gossypium hirsutum HOM05D007217 ORTHO05D009092 2.1e-22 109.4 126 49.2
Gohir.D06G146500 Gossypium hirsutum HOM05D007217 ORTHO05D009092 4.7e-22 108.2 125 49.6
Gorai.010G170900 Gossypium raimondii HOM05D007217 ORTHO05D009092 4.7e-22 108.2 125 49.6
Ciclev10018165m.g Citrus clementina HOM05D007217 ORTHO05D009092 1.8e-21 106.3 112 49.1
Prupe.4G105800 Prunus persica HOM05D007217 ORTHO05D009092 1.8e-21 106.3 100 52.0
Ciclev10029535m.g Citrus clementina HOM05D007217 ORTHO05D009092 2.4e-21 105.9 120 47.5
Peaxi162Scf00586g00008 Petunia axillaris HOM05D007217 ORTHO05D009092 6.8e-21 104.4 132 43.9
Dinv20263 Davidia involucrata HOM05D007217 ORTHO05D009092 8.9e-21 104.0 117 47.0
Sc06g0009730 Simmondsia chinensis HOM05D007217 ORTHO05D009092 1.3e-19 100.1 86 55.8
TWI09G0397 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 2.2e-19 99.4 126 44.4
Manes.02G204000 Manihot esculenta HOM05D007217 ORTHO05D009092 3.8e-19 98.6 126 42.9
TWI09G0788 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 3.8e-19 98.6 126 44.4
Cc01_g06080 Coffea canephora HOM05D007217 ORTHO05D009092 4.9e-19 98.2 125 45.6
Eucgr.E04359 Eucalyptus grandis HOM05D007217 ORTHO05D009092 4.9e-19 98.2 129 41.1
FvH4_3g11820 Fragaria vesca HOM05D007217 ORTHO05D009092 4.9e-19 98.2 103 48.5
Eucgr.E02022 Eucalyptus grandis HOM05D007217 ORTHO05D009092 1.9e-18 96.3 108 45.4
Gorai.011G051100 Gossypium raimondii HOM05D007217 ORTHO05D009092 1.9e-18 96.3 118 45.8
EL10Ac9g22805 Beta vulgaris HOM05D007217 ORTHO05D009092 2.4e-18 95.9 104 51.0
PGSC0003DMG400021318 Solanum tuberosum HOM05D007217 ORTHO05D009092 2.4e-18 95.9 122 44.3
RcHm_v2.0_Chr5g0019241 Rosa chinensis HOM05D007217 ORTHO05D009092 3.2e-18 95.5 103 49.5
Solyc01g007180.3 Solanum lycopersicum HOM05D007217 ORTHO05D009092 3.2e-18 95.5 122 44.3
Dinv01436 Davidia involucrata HOM05D007217 ORTHO05D009092 4.2e-18 95.1 91 49.5
Sopen01g003160 Solanum pennellii HOM05D007217 ORTHO05D009092 5.4e-18 94.7 122 44.3
MD10G1238500 Malus domestica HOM05D007217 ORTHO05D009092 7.1e-18 94.4 104 44.2
Rhsim02G0191400 Rhododendron simsii HOM05D007217 ORTHO05D009092 7.1e-18 94.4 119 42.0
Rhsim09G0182200 Rhododendron simsii HOM05D007217 ORTHO05D009092 1.2e-17 93.6 119 42.0
MD05G1258900 Malus domestica HOM05D007217 ORTHO05D009092 1.6e-17 93.2 101 45.5
FAN21G1503 Fragaria x ananassa HOM05D007217 ORTHO05D009092 2.1e-17 92.8 99 48.5
Gohir.D10G048000 Gossypium hirsutum HOM05D007217 ORTHO05D009092 2.1e-17 92.8 118 44.9
Nn7g37971 Nelumbo nucifera HOM05D007217 ORTHO05D009092 2.7e-17 92.4 118 41.5
Sabra01G0058500 Salix brachista HOM05D007217 ORTHO05D009092 3.5e-17 92.0 130 41.5
Potri.003G149100 Populus trichocarpa HOM05D007217 ORTHO05D009092 3.0e-16 89.0 124 43.5
VMungo1383G0797 Vigna mungo HOM05D007217 ORTHO05D009092 6.6e-16 87.8 100 43.0
FAN16G2896 Fragaria x ananassa HOM05D007217 ORTHO05D009092 1.1e-15 87.0 99 46.5
Gohir.A10G046700 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.5e-15 86.7 69 59.4
Lj5g0013157 Lotus japonicus HOM05D007217 ORTHO05D009092 1.5e-15 86.7 103 47.6
C02p14430 Brassica napus HOM05D007217 ORTHO05D009092 3.3e-15 85.5 62 61.3
BolC2t07567H Brassica oleracea HOM05D007217 ORTHO05D009092 3.3e-15 85.5 62 61.3
Phvul.008G108200 Phaseolus vulgaris HOM05D007217 ORTHO05D009092 3.3e-15 85.5 100 44.0
Rhsim05G0134700 Rhododendron simsii HOM05D007217 ORTHO05D009092 3.3e-15 85.5 118 40.7
MBI18_g37406_MAGBIO Magnolia biondii HOM05D007217 ORTHO05D009092 4.3e-15 85.1 115 42.6
MSTRG.12451 Avicennia marina HOM05D007217 ORTHO05D009092 5.6e-15 84.7 114 41.2
Oeu043290.1 Olea europaea HOM05D007217 ORTHO05D009092 5.6e-15 84.7 120 43.3
Lj6g0006317 Lotus japonicus HOM05D007217 ORTHO05D009092 9.6e-15 84.0 99 48.5
Glyma.15G250400 Glycine max HOM05D007217 ORTHO05D009092 1.3e-14 83.6 103 44.7
Potri.001G081300 Populus trichocarpa HOM05D007217 ORTHO05D009092 1.3e-14 83.6 109 44.0
Rhsim04G0112200 Rhododendron simsii HOM05D007217 ORTHO05D009092 1.3e-14 83.6 150 35.3
Glyma.08G176100 Glycine max HOM05D007217 ORTHO05D009092 3.6e-14 82.0 85 47.1
Lsat_1_v5_gn_4_36120 Lactuca sativa HOM05D007217 ORTHO05D009092 3.6e-14 82.0 69 52.2
Lalb_Chr16g0392431 Lupinus albus HOM05D007217 ORTHO05D009092 3.6e-14 82.0 120 40.8
Migut.N02356 Erythranthe guttata HOM05D007217 ORTHO05D009092 4.8e-14 81.6 114 36.8
Medtr8g011490 Medicago truncatula HOM05D007217 ORTHO05D009092 4.8e-14 81.6 107 43.9
arahy.Tifrunner.gnm1.ann1.Z0SJI2 Arachis hypogaea HOM05D007217 ORTHO05D009092 8.1e-14 80.9 103 41.7
COL.COLO4_30930 Corchorus olitorius HOM05D007217 ORTHO05D009092 8.1e-14 80.9 53 66.0
arahy.Tifrunner.gnm1.ann1.TIKV1F Arachis hypogaea HOM05D007217 ORTHO05D009092 1.8e-13 79.7 103 41.7
DCAR_031675 Daucus carota HOM05D007217 ORTHO05D009092 3.1e-13 79.0 91 42.9
DCAR_001337 Daucus carota HOM05D007217 ORTHO05D009092 5.3e-13 78.2 91 41.8
AUR62017567 Chenopodium quinoa HOM05D007217 ORTHO05D009092 6.9e-13 77.8 62 59.7
Psat0s5329g0080 Pisum sativum HOM05D007217 ORTHO05D009092 9.0e-13 77.4 106 38.7
arahy.Tifrunner.gnm1.ann1.3NP1QY Arachis hypogaea HOM05D007217 ORTHO05D009092 1.2e-12 77.0 101 40.6
SGA_v2.0_scaffold3G01474 Striga asiatica HOM05D007217 ORTHO05D009092 4.4e-12 75.1 114 36.8
Lsat_1_v5_gn_7_8820 Lactuca sativa HOM05D007217 ORTHO05D009092 5.8e-12 74.7 115 33.0
SalBow8G5173 Salvia bowleyana HOM05D007217 ORTHO05D009092 2.2e-11 72.8 72 43.1
HanXRQChr04g0107331 Helianthus annuus HOM05D007217 ORTHO05D009092 4.9e-11 71.6 126 35.7
unitig_749.g13716 Utricularia gibba HOM05D007217 ORTHO05D009092 6.4e-11 71.2 115 33.9
GSVIVG01013634001 Vitis vinifera HOM05D007217 ORTHO05D009092 8.4e-11 70.9 106 41.5
HPP92_002517 Vanilla planifolia HOM05D007217 ORTHO05D009092 2.4e-10 69.3 67 46.3
HPP92_002534 Vanilla planifolia HOM05D007217 ORTHO05D009092 2.4e-10 69.3 67 46.3
TAR722G0002 Trochodendron aralioides HOM05D007217 ORTHO05D009092 3.2e-10 68.9 120 39.2
Hund24191 Selenicereus undatus HOM05D007217 ORTHO05D009092 2.1e-09 66.2 96 40.6
Nitab4.5_0004758g0070 Nicotiana tabacum HOM05D007217 ORTHO05D009092 4.6e-09 65.1 128 34.4
Psat4g125640 Pisum sativum HOM05D007217 ORTHO05D009092 6.0e-09 64.7 127 34.6
ATR0763G267 Amborella trichopoda HOM05D007217 ORTHO05D009092 5.1e-08 61.6 61 44.3
Nitab4.5_0002858g0010 Nicotiana tabacum HOM05D007217 ORTHO05D009092 3.3e-07 58.9 98 40.8
Hma1.2p1_0074F.1_g039010 Hydrangea macrophylla HOM05D007217 ORTHO05D009092 1.3e-06 57.0 92 33.7
Zm00001eb228930 Zea mays HOM05D007217 ORTHO05D009092 6.2e-06 54.7 91 35.2


User provided reference genes

Program Settings