Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.3e-293 1012.3 499 100.0
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 2.3e-258 895.2 497 87.3
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 5.1e-258 894.0 497 86.9
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 2.5e-257 891.7 497 86.7
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 3.7e-256 887.9 497 86.1
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 7.7e-246 853.6 471 87.0
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 5.5e-244 847.4 467 87.6
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.5e-241 838.6 499 83.0
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 7.9e-235 817.0 511 80.6
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 4.7e-219 764.6 444 84.2
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 5.9e-206 721.1 489 76.1
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.0e-197 693.7 479 72.2
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 2.1e-195 686.0 367 90.7
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 6.8e-186 654.4 467 67.9
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.4e-185 651.7 467 67.2
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 4.9e-184 648.3 467 67.2
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 4.9e-184 648.3 463 68.5
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-182 643.3 471 67.9
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 1.6e-182 643.3 471 67.9
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 4.6e-182 641.7 468 67.9
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 7.8e-182 641.0 468 68.4
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-181 640.2 468 68.2
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 5.1e-181 638.3 469 66.7
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 5.6e-180 634.8 468 67.3
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-179 633.3 472 66.9
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 8.1e-179 630.9 467 66.6
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 1.4e-178 630.2 470 67.4
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 3.1e-178 629.0 467 66.0
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 5.2e-178 628.2 467 66.2
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 7.6e-177 624.4 467 66.2
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.4e-175 619.4 467 65.1
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 1.1e-172 610.5 459 63.6
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 2.5e-172 609.4 458 64.0
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 3.3e-172 609.0 460 63.7
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 5.6e-172 608.2 459 64.1
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 3.6e-171 605.5 459 62.1
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 6.2e-171 604.7 467 63.8
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 3.1e-170 602.4 460 62.8
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 3.1e-170 602.4 459 63.0
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 6.8e-170 601.3 459 62.3
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 3.4e-169 599.0 467 61.9
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 2.2e-168 596.3 459 63.0
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 8.4e-168 594.3 459 62.5
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 3.2e-167 592.4 464 64.2
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 1.2e-166 590.5 459 62.5
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.2e-166 590.5 459 62.5
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.6e-166 590.1 459 61.2
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.6e-166 588.6 459 62.3
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.9e-165 585.5 459 62.1
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 8.7e-165 584.3 460 60.7
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 1.1e-164 583.9 460 61.7
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 1.5e-164 583.6 463 60.5
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 1.5e-164 583.6 467 60.2
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.5e-164 583.6 486 59.7
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 2.1e-163 579.7 460 61.1
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 2.8e-163 579.3 459 61.2
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 1.8e-162 576.6 460 60.9
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 5.3e-162 575.1 458 60.3
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 9.0e-162 574.3 460 61.7
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 9.0e-162 574.3 453 60.7
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 2.0e-161 573.2 458 59.2
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 5.8e-161 571.6 460 59.3
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 9.9e-161 570.9 432 62.3
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 9.9e-161 570.9 459 59.5
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 4.9e-160 568.5 459 58.6
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 1.1e-159 567.4 459 59.3
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 2.4e-159 566.2 458 59.2
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 1.2e-158 563.9 459 59.0
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.6e-158 563.5 468 58.1
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 2.1e-158 563.1 458 59.2
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 2.7e-158 562.8 465 58.7
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 7.9e-158 561.2 441 63.0
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 7.9e-158 561.2 469 58.2
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 1.0e-157 560.8 460 60.2
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 3.0e-157 559.3 459 58.8
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 5.1e-157 558.5 459 58.4
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 8.7e-157 557.8 459 58.4
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 8.7e-157 557.8 459 60.3
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 1.1e-156 557.4 459 57.3
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 1.5e-156 557.0 467 61.2
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.5e-156 557.0 459 58.4
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 1.9e-156 556.6 466 57.1
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 7.3e-156 554.7 460 57.6
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 2.8e-155 552.7 460 57.0
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 4.8e-155 552.0 466 56.9
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 8.1e-155 551.2 465 57.6
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.4e-154 550.4 470 57.7
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 2.4e-154 549.7 408 65.7
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 3.1e-154 549.3 444 62.2
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 5.3e-154 548.5 458 57.2
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 6.9e-154 548.1 460 57.8
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 1.5e-153 547.0 460 57.4
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 3.4e-153 545.8 465 56.8
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 5.8e-153 545.0 464 59.9
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 8.4e-152 541.2 466 57.7
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 7.1e-151 538.1 431 59.6
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 7.1e-151 538.1 459 56.2
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 1.5e-148 530.4 413 60.8
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 3.7e-147 525.8 460 57.0
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 1.8e-146 523.5 438 58.7
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 2.9e-144 516.2 444 57.4
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 7.1e-143 511.5 387 64.9
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 7.1e-143 511.5 459 56.6
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 7.1e-143 511.5 459 54.2
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 1.6e-142 510.4 459 54.7
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 3.9e-141 505.8 446 59.6
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 3.3e-140 502.7 451 52.8
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 2.8e-139 499.6 435 57.5
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 7.6e-137 491.5 459 51.4
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 5.5e-135 485.3 431 53.1
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 5.7e-132 475.3 462 51.9
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 2.9e-128 463.0 479 52.6
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 2.9e-128 463.0 421 54.6
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 1.9e-127 460.3 492 49.8
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 7.2e-127 458.4 457 50.1
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 1.4e-125 454.1 467 51.8
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 8.2e-123 444.9 334 63.8
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 4.7e-118 429.1 360 57.2
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 4.5e-113 412.5 457 48.4
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 1.2e-110 404.4 504 43.8
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.6e-102 377.5 497 43.5
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 2.1e-94 350.5 462 42.4
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 1.9e-87 327.4 465 46.7
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 4.4e-84 316.2 228 71.9
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 9.2e-82 308.5 222 72.1
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 5.0e-80 302.8 500 36.0
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 3.6e-78 296.6 247 59.9
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 7.8e-73 278.9 226 64.6
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 1.3e-72 278.1 423 40.0
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 8.1e-70 268.9 191 67.5
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 3.1e-69 266.9 191 67.0
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 4.3e-63 246.5 189 60.8
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 7.3e-63 245.7 262 48.9
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 3.2e-58 230.3 198 58.6
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-56 224.9 181 67.4
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 3.1e-53 213.8 217 58.1
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 7.6e-52 209.1 128 81.2
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 7.6e-52 209.1 316 42.7
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 6.4e-51 206.1 134 77.6
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 9.6e-47 192.2 217 53.5
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 3.6e-46 190.3 145 60.0
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 5.3e-45 186.4 120 84.2
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 1.5e-39 168.3 220 50.5
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 3.8e-35 153.7 111 67.6
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 1.2e-33 148.7 110 60.9
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 2.1e-33 147.9 152 48.7
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 1.5e-31 141.7 106 66.0
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 6.9e-29 132.9 145 54.5
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 3.4e-28 130.6 145 53.1
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.2e-25 122.1 83 62.7
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 2.1e-25 121.3 72 72.2
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-24 118.6 74 70.3
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 3.0e-24 117.5 74 70.3
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 4.1e-21 107.1 131 51.1
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 4.1e-21 107.1 63 73.0
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 5.3e-21 106.7 93 62.4
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 7.6e-20 102.8 103 54.4
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 1.6e-17 95.1 131 45.8
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 1.6e-17 95.1 88 55.7
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 4.6e-17 93.6 55 80.0
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 6.1e-17 93.2 52 76.9
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 5.1e-16 90.1 53 77.4
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 5.7e-15 86.7 54 63.0
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 4.8e-14 83.6 52 67.3
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 1.1e-13 82.4 79 51.9
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 1.8e-13 81.6 116 40.5
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 8.5e-11 72.8 40 85.0
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.6e-09 68.6 186 28.5
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.4e-08 65.5 177 28.2
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.5e-07 62.0 177 27.1
C05p23630 Brassica napus HOM05D004011 ORTHO05D033156 4.4e-07 60.5 40 70.0
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 1.3e-06 58.9 48 47.9
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 3.7e-06 57.4 50 60.0
BcaC05g26339 Brassica carinata HOM05D010092 ORTHO05D012468 8.2e-06 56.2 154 32.5
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 8.2e-06 56.2 47 63.8


User provided reference genes

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