Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 7.8e-106 387.1 192 100.0
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.8e-94 349.4 192 93.2
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 2.4e-94 349.0 192 91.1
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.4e-94 349.0 193 93.3
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 1.3e-92 343.2 192 90.6
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 3.2e-91 338.6 192 89.1
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 3.2e-91 338.6 192 89.1
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 3.2e-91 338.6 188 91.0
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 3.2e-91 338.6 192 91.7
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 2.1e-90 335.9 195 88.7
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 2.7e-90 335.5 196 89.3
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 6.0e-90 334.3 192 90.1
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 5.1e-89 331.3 196 88.3
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 1.3e-84 316.6 183 89.6
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.4e-83 313.2 183 88.0
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 7.4e-80 300.8 190 78.4
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.7e-79 298.5 190 77.4
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 2.4e-70 269.2 193 76.7
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 8.4e-68 260.8 155 89.0
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 2.3e-65 252.7 181 73.5
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 1.0e-60 237.3 123 95.1
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.5e-53 213.4 192 58.9
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 4.5e-53 211.8 192 59.4
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 7.7e-53 211.1 176 61.4
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 4.2e-51 205.3 172 59.9
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 9.4e-51 204.1 173 58.4
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 2.1e-50 203.0 179 57.5
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 3.6e-50 202.2 171 59.6
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 1.4e-49 200.3 178 56.7
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 1.8e-49 199.9 174 59.2
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.8e-49 199.9 195 57.4
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.8e-49 199.9 178 57.9
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 1.8e-49 199.9 172 57.0
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 2.3e-49 199.5 171 58.5
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 3.9e-49 198.7 172 57.6
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 5.1e-49 198.4 192 55.2
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 5.1e-49 198.4 163 61.3
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 6.7e-49 198.0 173 55.5
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 1.5e-48 196.8 169 56.8
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 3.3e-48 195.7 173 56.6
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 4.4e-48 195.3 172 57.0
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 5.7e-48 194.9 170 56.5
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 9.7e-48 194.1 174 55.7
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 1.7e-47 193.4 181 55.8
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.7e-47 193.4 172 55.8
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 2.2e-47 193.0 170 55.9
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 2.8e-47 192.6 173 55.5
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 3.7e-47 192.2 171 57.3
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 3.7e-47 192.2 171 57.9
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 3.7e-47 192.2 164 59.8
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 6.3e-47 191.4 171 55.6
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 6.3e-47 191.4 176 55.7
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 6.3e-47 191.4 170 53.5
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 6.3e-47 191.4 168 57.1
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 1.8e-46 189.9 169 55.6
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.4e-46 189.5 172 55.8
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 4.1e-46 188.7 172 55.2
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 4.1e-46 188.7 169 55.0
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 5.3e-46 188.3 174 54.0
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 5.3e-46 188.3 180 53.3
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 5.3e-46 188.3 172 55.2
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 7.0e-46 188.0 171 55.6
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 9.1e-46 187.6 175 56.6
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 1.2e-45 187.2 176 54.5
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.5e-45 186.8 174 54.0
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.5e-45 186.8 173 53.2
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 2.6e-45 186.0 176 54.5
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 3.4e-45 185.7 172 54.1
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 4.5e-45 185.3 190 54.7
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 4.5e-45 185.3 169 53.8
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 4.5e-45 185.3 173 53.2
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 5.9e-45 184.9 162 58.6
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 7.7e-45 184.5 185 54.1
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 1.0e-44 184.1 172 54.1
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 1.0e-44 184.1 169 53.8
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 1.3e-44 183.7 175 53.1
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.7e-44 183.3 169 53.3
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.9e-44 182.6 178 55.6
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 6.5e-44 181.4 187 52.9
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.9e-43 179.9 169 53.3
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 2.5e-43 179.5 175 52.6
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.2e-43 179.1 178 54.5
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 4.2e-43 178.7 169 52.7
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 4.2e-43 178.7 167 54.5
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 4.2e-43 178.7 176 50.6
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.2e-42 177.2 178 53.9
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.7e-42 176.0 178 53.9
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 3.6e-42 175.6 171 55.6
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 3.6e-42 175.6 186 51.1
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.0e-42 174.5 168 51.8
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 2.3e-41 172.9 206 48.5
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.3e-41 172.9 174 51.1
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 5.2e-41 171.8 193 50.8
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 6.7e-41 171.4 190 51.1
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 1.1e-40 170.6 209 45.0
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.4e-40 168.7 168 51.2
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 5.7e-40 168.3 190 51.6
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 1.3e-39 167.2 190 51.1
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 1.7e-39 166.8 235 42.1
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.7e-39 166.8 186 48.4
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 6.3e-39 164.9 133 62.4
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.4e-38 163.7 161 51.6
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 3.1e-38 162.5 147 55.1
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 5.3e-38 161.8 174 50.0
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 1.2e-37 160.6 125 64.0
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.9e-37 158.3 159 50.3
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 7.7e-37 157.9 144 57.6
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 2.9e-36 156.0 168 51.2
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 3.8e-36 155.6 175 50.9
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.1e-35 154.1 160 51.9
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 1.5e-35 153.7 189 46.6
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 9.4e-35 151.0 125 60.0
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 1.6e-34 150.2 187 46.0
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 2.7e-34 149.4 187 46.0
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 2.7e-34 149.4 171 48.0
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 6.1e-34 148.3 109 67.0
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 8.0e-34 147.9 169 47.9
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 1.0e-33 147.5 122 59.8
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 2.6e-32 142.9 172 43.6
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 1.8e-30 136.7 148 48.0
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 2.7e-29 132.9 159 42.8
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 3.8e-28 129.0 186 40.9
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 9.4e-27 124.4 133 49.6
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 4.7e-26 122.1 126 50.0
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.8e-25 120.2 122 50.0
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 5.2e-25 118.6 148 43.9
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 6.8e-25 118.2 157 43.9
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 6.8e-25 118.2 131 49.6
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 6.8e-25 118.2 118 51.7
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 7.5e-24 114.8 133 44.4
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 1.7e-23 113.6 122 50.0
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 1.8e-22 110.2 158 43.7
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.6e-21 107.1 121 47.1
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 1.1e-19 100.9 179 34.6
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 2.1e-18 96.7 172 36.0
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 1.0e-17 94.4 121 39.7
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 5.2e-17 92.0 83 56.6
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 3.3e-11 72.8 50 68.0
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 3.3e-11 72.8 50 68.0
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 7.3e-11 71.6 54 63.0
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 1.2e-10 70.9 60 56.7
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 2.1e-10 70.1 50 66.0
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 4.7e-10 68.9 72 44.4
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 6.1e-10 68.6 60 55.0
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.8e-09 67.0 53 60.4
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 6.8e-09 65.1 124 36.3
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 8.3e-07 58.2 41 63.4


User provided reference genes

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