Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g20800 Schrenkiella parvula HOM05D008070 ORTHO05D001888 2.9e-85 318.5 165 100.0
AL1G37150 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 3.4e-73 278.5 166 87.3
Thhalv10008931m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 1.7e-72 276.2 169 88.2
Carub.0001s2294 Capsella rubella HOM05D008070 ORTHO05D001888 2.9e-69 265.4 167 83.2
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 2.5e-68 262.3 168 82.7
BcaC06g35034 Brassica carinata HOM05D008070 ORTHO05D001888 3.6e-67 258.5 164 83.5
BolC7t42570H Brassica oleracea HOM05D008070 ORTHO05D001888 8.0e-67 257.3 164 82.9
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 2.3e-66 255.8 165 80.6
BraA07t29145Z Brassica rapa HOM05D008070 ORTHO05D001888 6.8e-66 254.2 165 83.6
BcaB03g14151 Brassica carinata HOM05D008070 ORTHO05D001888 2.6e-65 252.3 157 85.4
BcaB03g11935 Brassica carinata HOM05D008070 ORTHO05D001888 1.1e-63 246.9 164 82.3
BcaC07g39196 Brassica carinata HOM05D008070 ORTHO05D001888 9.2e-63 243.8 163 81.0
BolC8t49825H Brassica oleracea HOM05D008070 ORTHO05D001888 9.2e-63 243.8 163 81.0
A08p28210 Brassica napus HOM05D008070 ORTHO05D001888 4.6e-62 241.5 163 80.4
BraA08t34752Z Brassica rapa HOM05D008070 ORTHO05D001888 4.6e-62 241.5 163 80.4
C08p21860 Brassica napus HOM05D008070 ORTHO05D001888 3.9e-61 238.4 163 79.8
BcaC05g26248 Brassica carinata HOM05D008070 ORTHO05D001888 1.6e-59 233.0 165 76.4
C05p22620 Brassica napus HOM05D008070 ORTHO05D001888 1.6e-59 233.0 165 76.4
BolC5t30961H Brassica oleracea HOM05D008070 ORTHO05D001888 1.6e-59 233.0 165 76.4
BcaB07g32331 Brassica carinata HOM05D008070 ORTHO05D001888 3.4e-57 225.3 165 73.3
Aa31LG7G7380 Aethionema arabicum HOM05D008070 ORTHO05D001888 1.4e-55 219.9 154 70.8
BraA09t39622Z Brassica rapa HOM05D008070 ORTHO05D001888 1.9e-47 193.0 135 76.3
A09p41290 Brassica napus HOM05D008070 ORTHO05D001888 1.6e-46 189.9 135 75.6
AL2G29930 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 5.1e-45 184.9 168 58.3
Carub.0002s1726 Capsella rubella HOM05D008070 ORTHO05D001888 8.6e-45 184.1 168 58.9
AT1G70540 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 1.5e-44 183.3 168 58.3
BcaC03g15202 Brassica carinata HOM05D008070 ORTHO05D001888 8.1e-43 177.6 167 54.5
C02p27870 Brassica napus HOM05D008070 ORTHO05D001888 8.1e-43 177.6 167 54.5
BolC2t08833H Brassica oleracea HOM05D008070 ORTHO05D001888 8.1e-43 177.6 167 54.5
Sp5g25690 Schrenkiella parvula HOM05D008070 ORTHO05D001888 1.1e-42 177.2 167 56.9
BraA02t06717Z Brassica rapa HOM05D008070 ORTHO05D001888 1.8e-42 176.4 167 54.5
Thhalv10019249m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 1.8e-42 176.4 165 55.8
A02p16620 Brassica napus HOM05D008070 ORTHO05D001888 5.2e-42 174.9 167 53.9
CARHR063750 Cardamine hirsuta HOM05D008070 ORTHO05D001888 9.9e-41 170.6 168 54.8
C07p20460 Brassica napus HOM05D001342 ORTHO05D001286 1.8e-34 149.8 106 77.4
A07p13910 Brassica napus HOM05D001342 ORTHO05D001286 4.0e-34 148.7 107 80.4
THA.LOC104822979 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 1.7e-32 143.3 131 55.0
THA.LOC104822159 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 9.3e-31 137.5 161 48.4
Aa31LG4G10410 Aethionema arabicum HOM05D008070 ORTHO05D001888 6.4e-24 114.8 157 42.0
BcaB05g24587 Brassica carinata HOM05D008070 ORTHO05D001888 9.3e-23 110.9 106 52.8
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 3.9e-21 105.5 145 40.0
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 3.9e-21 105.5 145 38.6
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 1.1e-20 104.0 134 41.8
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 1.9e-20 103.2 158 36.1
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 2.4e-18 96.3 140 40.0
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 2.6e-17 92.8 131 39.7
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 5.8e-17 91.7 162 37.0
Aa31LG2G9780 Aethionema arabicum HOM05D009121 ORTHO05D001888 2.9e-16 89.4 156 35.9
CANSAT01G1404 Cannabis sativa HOM05D008070 ORTHO05D001888 8.4e-16 87.8 131 37.4
Atru.chr11.2085 Acer truncatum HOM05D008070 ORTHO05D001888 1.9e-15 86.7 157 36.3
Atru.chr11.2086 Acer truncatum HOM05D008070 ORTHO05D001888 1.9e-15 86.7 157 36.3
TWI36G0098 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 3.2e-15 85.9 134 35.8
TWI75G1444 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 3.2e-15 85.9 151 35.8
Duzib251G0841 Durio zibethinus HOM05D008070 ORTHO05D001888 1.6e-14 83.6 161 32.9
Sed0022116 Sechium edule HOM05D008070 ORTHO05D001888 2.1e-14 83.2 156 34.0
Sed0024894 Sechium edule HOM05D008070 ORTHO05D001888 2.1e-14 83.2 147 36.7
MELO3C011974.2 Cucumis melo HOM05D008070 ORTHO05D001888 3.5e-14 82.4 161 34.2
QL03p058723 Quercus lobata HOM05D010056 ORTHO05D001888 3.5e-14 82.4 156 32.7
CsaV3_5G031330 Cucumis sativus L. HOM05D008070 ORTHO05D001888 4.6e-14 82.0 163 35.6
THA.LOC104809586 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 6.0e-14 81.6 162 31.5
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 3.9e-13 79.0 133 36.8
ATR1152G035 Amborella trichopoda HOM05D008070 ORTHO05D001888 5.1e-13 78.6 164 34.8
THA.LOC104819351 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 1.1e-12 77.4 142 31.7
Manes.13G026900 Manihot esculenta HOM05D008070 ORTHO05D001888 1.5e-12 77.0 155 32.9
BcaB08g37374 Brassica carinata HOM05D009121 ORTHO05D001888 2.5e-12 76.3 157 33.1
C08p48520 Brassica napus HOM05D009121 ORTHO05D001888 2.5e-12 76.3 130 34.6
Thhalv10008932m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 2.5e-12 76.3 157 29.3
BcaC05g24955 Brassica carinata HOM05D009121 ORTHO05D001888 7.4e-12 74.7 157 29.9
BolC8t52391H Brassica oleracea HOM05D009121 ORTHO05D001888 7.4e-12 74.7 154 31.8
Ciclev10032926m.g Citrus clementina HOM05D008070 ORTHO05D001888 7.4e-12 74.7 129 33.3
Sp2g04000 Schrenkiella parvula HOM05D009121 ORTHO05D001888 7.4e-12 74.7 157 32.5
A09p64670 Brassica napus HOM05D009121 ORTHO05D001888 9.6e-12 74.3 154 31.8
BraA09t41825Z Brassica rapa HOM05D009121 ORTHO05D001888 9.6e-12 74.3 154 31.8
CiPaw.06G069400 Carya illinoinensis HOM05D008070 ORTHO05D001888 1.3e-11 73.9 160 33.8
BcaC07g38628 Brassica carinata HOM05D009121 ORTHO05D001888 1.6e-11 73.6 129 33.3
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 6.2e-11 71.6 149 32.2
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 6.2e-11 71.6 134 37.3
COL.COLO4_24233 Corchorus olitorius HOM05D008070 ORTHO05D001888 1.1e-10 70.9 162 31.5
AT1G10770 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 1.4e-10 70.5 151 29.1
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 1.4e-10 70.5 136 33.1
AL1G21700 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 1.8e-10 70.1 151 29.8
Carub.0001s1032 Capsella rubella HOM05D009121 ORTHO05D001888 1.8e-10 70.1 156 28.8
Cpa.g.sc69.89 Carica papaya HOM05D008070 ORTHO05D001888 1.8e-10 70.1 130 35.4
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 2.4e-10 69.7 132 34.1
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 2.4e-10 69.7 136 31.6
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 2.4e-10 69.7 136 31.6
MELO3C011973.2 Cucumis melo HOM05D008070 ORTHO05D001888 2.4e-10 69.7 158 31.0
AL2G15820 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 3.1e-10 69.3 162 29.6
C05p09130 Brassica napus HOM05D009121 ORTHO05D001888 4.0e-10 68.9 151 30.5
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 5.3e-10 68.6 136 31.6
QL03p058730 Quercus lobata HOM05D008070 ORTHO05D001888 5.3e-10 68.6 143 32.2
QL04p082607 Quercus lobata HOM05D010056 ORTHO05D001888 5.3e-10 68.6 120 31.7
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 6.9e-10 68.2 136 30.9
BolC5t29657H Brassica oleracea HOM05D009121 ORTHO05D001888 6.9e-10 68.2 157 28.0
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 1.2e-09 67.4 136 32.4
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 1.2e-09 67.4 136 30.9
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 1.2e-09 67.4 136 30.9
Thhalv10024081m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 1.2e-09 67.4 155 31.0
Sed0000802 Sechium edule HOM05D008070 ORTHO05D001888 1.2e-09 67.4 126 33.3
TAR622G1131 Trochodendron aralioides HOM05D008070 ORTHO05D001888 1.5e-09 67.0 138 30.4
Eucgr.H02532 Eucalyptus grandis HOM05D008070 ORTHO05D001888 3.4e-09 65.9 152 30.9
TAR629G1731 Trochodendron aralioides HOM05D008070 ORTHO05D001888 3.4e-09 65.9 160 31.2
CARHR051730 Cardamine hirsuta HOM05D009121 ORTHO05D001888 5.8e-09 65.1 158 28.5
Carub.0002s0459 Capsella rubella HOM05D009121 ORTHO05D001888 7.6e-09 64.7 162 29.0
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 7.6e-09 64.7 157 30.6
A06p07570 Brassica napus HOM05D009121 ORTHO05D001888 1.0e-08 64.3 157 27.4
BraA06t23959Z Brassica rapa HOM05D009121 ORTHO05D001888 1.0e-08 64.3 157 27.4
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 1.3e-08 63.9 137 30.7
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 2.2e-08 63.2 139 31.7
QL04p082804 Quercus lobata HOM05D010056 ORTHO05D001888 2.2e-08 63.2 129 31.8
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 2.9e-08 62.8 139 30.2
CDE02G2547 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 6.5e-08 61.6 141 27.0
Rhsim02G0004500 Rhododendron simsii HOM05D005742 ORTHO05D001888 6.5e-08 61.6 146 28.8
BcaC07g38589 Brassica carinata HOM05D009121 ORTHO05D001888 2.5e-07 59.7 129 29.5
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 3.2e-07 59.3 139 30.9
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 3.2e-07 59.3 137 29.2
MBI10_g44381_MAGBIO Magnolia biondii HOM05D008070 ORTHO05D001888 4.2e-07 58.9 157 31.2
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 4.2e-07 58.9 142 28.2
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 5.5e-07 58.5 136 27.9
Oeu003757.1 Olea europaea HOM05D005742 ORTHO05D001888 5.5e-07 58.5 141 27.0
Oeu032017.1 Olea europaea HOM05D005742 ORTHO05D001888 7.1e-07 58.2 141 27.0
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 9.3e-07 57.8 143 30.8
Medtr2g034220 Medicago truncatula HOM05D005742 ORTHO05D001888 1.2e-06 57.4 150 26.7
MBI19_g03227_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 1.6e-06 57.0 158 25.9
PSO478G3987 Papaver somniferum HOM05D020914 ORTHO05D001888 1.6e-06 57.0 164 26.2
CSS0018184 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 2.1e-06 56.6 143 25.9
CSS0026509 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 2.1e-06 56.6 143 25.9
vmacro15186 Vaccinium macrocarpon HOM05D005742 ORTHO05D001888 2.1e-06 56.6 141 27.0
LjContig00081g0023529 Lotus japonicus HOM05D005742 ORTHO05D001888 4.6e-06 55.5 142 24.6
SalBow8G0437 Salvia bowleyana HOM05D005742 ORTHO05D001888 4.6e-06 55.5 145 28.3
SalBow8G4915 Salvia bowleyana HOM05D005742 ORTHO05D001888 4.6e-06 55.5 145 28.3
Cpa.g.sc9.68 Carica papaya HOM05D005742 ORTHO05D001888 7.9e-06 54.7 143 28.0
Dinv44293 Davidia involucrata HOM05D005742 ORTHO05D001888 7.9e-06 54.7 161 26.7


User provided reference genes

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