Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 3.1e-180 635.2 356 100.0
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.6e-165 586.3 357 89.1
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 5.1e-159 564.7 357 82.9
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.5e-158 562.4 353 83.9
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 2.5e-158 562.4 359 84.1
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 5.2e-156 554.7 357 80.7
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.3e-154 550.1 361 82.3
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 8.4e-154 547.4 357 81.5
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 3.9e-151 538.5 359 82.2
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 1.5e-150 536.6 360 80.6
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 2.4e-145 519.2 360 78.3
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 4.2e-145 518.5 360 78.3
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 3.5e-144 515.4 367 73.3
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 4.2e-121 438.7 359 64.6
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 4.2e-121 438.7 363 64.7
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.5e-118 429.5 349 64.8
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 6.9e-116 421.4 358 62.3
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 1.1e-113 414.1 358 61.5
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.5e-113 412.9 353 62.6
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.6e-112 410.2 365 60.0
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 2.7e-112 409.5 336 65.2
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 6.1e-104 381.7 352 56.8
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 7.9e-104 381.3 298 67.4
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 1.8e-103 380.2 313 62.6
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 1.4e-100 370.5 348 58.6
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 4.1e-100 369.0 343 58.0
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 3.2e-97 359.4 365 52.9
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 4.2e-97 359.0 364 52.2
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 2.7e-96 356.3 366 51.6
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 4.7e-96 355.5 364 54.4
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 6.1e-96 355.1 366 52.2
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.8e-95 353.6 364 51.6
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 3.0e-95 352.8 366 51.9
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 4.0e-95 352.4 365 51.2
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 8.8e-95 351.3 358 51.4
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 2.6e-94 349.7 363 51.0
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 2.2e-93 346.7 361 50.4
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 2.2e-93 346.7 360 50.6
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 4.8e-93 345.5 364 51.6
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 8.2e-93 344.7 363 51.8
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 4.1e-92 342.4 352 50.0
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 5.3e-92 342.0 357 51.8
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 7.0e-92 341.7 366 50.0
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 1.6e-91 340.5 357 51.5
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 1.6e-91 340.5 351 51.0
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 2.7e-91 339.7 363 51.0
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 2.7e-91 339.7 360 50.6
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 3.5e-91 339.3 360 49.7
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 4.5e-91 339.0 362 49.4
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 5.9e-91 338.6 364 50.3
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 7.7e-91 338.2 367 50.1
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 1.3e-90 337.4 366 49.2
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 2.2e-90 336.7 358 50.0
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 2.9e-90 336.3 357 51.0
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 2.5e-89 333.2 359 49.3
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 3.2e-89 332.8 363 48.8
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 3.2e-89 332.8 363 49.3
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 4.2e-89 332.4 360 48.9
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 5.5e-89 332.0 360 48.9
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 5.5e-89 332.0 360 48.9
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 7.2e-89 331.6 365 49.3
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 7.2e-89 331.6 360 50.8
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 9.4e-89 331.3 360 48.9
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.2e-88 330.9 341 51.0
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 1.2e-88 330.9 370 49.2
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 2.1e-88 330.1 364 50.5
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 2.7e-88 329.7 366 48.4
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 4.7e-88 328.9 360 50.6
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 6.1e-88 328.6 366 48.9
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 6.1e-88 328.6 234 76.9
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 8.0e-88 328.2 360 50.8
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.8e-87 327.0 341 51.0
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 6.8e-87 325.1 364 49.2
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 2.0e-86 323.6 370 48.9
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 3.4e-86 322.8 346 54.3
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 4.8e-85 318.9 368 48.1
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 4.8e-85 318.9 364 48.9
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 6.3e-85 318.5 364 47.0
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 1.1e-84 317.8 355 49.6
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 3.1e-84 316.2 366 48.6
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 7.0e-84 315.1 405 44.0
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 1.2e-83 314.3 343 49.0
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 3.5e-83 312.8 351 48.1
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 7.7e-83 311.6 360 48.3
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 1.1e-81 307.8 361 46.8
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.9e-81 307.0 352 47.7
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 2.5e-81 306.6 346 49.7
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 1.2e-80 304.3 403 43.9
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 5.2e-79 298.9 333 49.5
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 2.6e-78 296.6 370 43.8
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 2.6e-78 296.6 346 46.2
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 3.4e-78 296.2 428 41.1
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 4.4e-78 295.8 348 48.0
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 7.5e-78 295.0 271 60.9
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 3.7e-77 292.7 366 44.0
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 3.7e-77 292.7 363 44.4
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 4.9e-77 292.4 322 49.4
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 1.4e-76 290.8 361 44.0
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 3.1e-76 289.7 366 45.6
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 3.1e-76 289.7 375 43.2
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 3.1e-76 289.7 351 43.9
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 7.7e-75 285.0 367 48.0
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 1.0e-74 284.6 368 48.4
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 3.3e-73 279.6 364 46.4
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 2.8e-72 276.6 306 50.0
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 6.8e-71 271.9 332 45.5
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 7.5e-70 268.5 356 42.1
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 2.9e-69 266.5 354 41.0
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 3.7e-69 266.2 297 49.2
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 8.3e-69 265.0 282 51.4
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 4.1e-68 262.7 305 48.9
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 4.1e-68 262.7 360 41.9
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 7.8e-67 258.5 308 47.7
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 1.6e-64 250.8 368 40.8
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 1.4e-63 247.7 351 40.5
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 6.8e-63 245.4 281 47.7
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 3.4e-62 243.0 360 37.5
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 1.9e-60 237.3 358 38.8
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 1.6e-48 197.6 351 35.0
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 1.6e-48 197.6 238 46.2
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 1.8e-47 194.1 245 44.9
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 1.9e-44 184.1 123 73.2
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 3.2e-44 183.3 325 35.4
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 4.1e-44 183.0 240 45.4
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 7.8e-43 178.7 338 35.2
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 7.3e-41 172.2 228 45.6
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 7.6e-38 162.2 182 50.5
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 9.9e-38 161.8 234 41.5
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 1.3e-34 151.4 351 28.8
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 1.5e-33 147.9 201 38.3
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 4.0e-31 139.8 239 39.7
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 6.9e-31 139.0 299 33.1
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 3.6e-24 116.7 126 46.8
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 6.2e-24 115.9 162 38.3
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 5.5e-20 102.8 339 27.4
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 3.8e-13 80.1 169 33.7
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 1.5e-06 58.2 56 50.0
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 4.5e-06 56.6 55 45.5
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 7.6e-06 55.8 56 46.4


User provided reference genes

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