Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g20420 Schrenkiella parvula HOM05D007426 ORTHO05D009167 5.1e-185 652.1 754 100.0
Thhalv10006897m.g Eutrema salsugineum HOM05D007426 ORTHO05D009167 3.8e-132 476.5 583 83.2
BolC5t30917H Brassica oleracea HOM05D007426 ORTHO05D009167 2.7e-109 400.6 586 75.9
A09p41750 Brassica napus HOM05D007426 ORTHO05D009167 3.5e-109 400.2 586 77.3
BcaC05g26208 Brassica carinata HOM05D007426 ORTHO05D009167 6.6e-108 396.0 585 75.9
C05p22170 Brassica napus HOM05D007426 ORTHO05D009167 2.5e-107 394.0 586 75.6
BcaB07g32294 Brassica carinata HOM05D007426 ORTHO05D009167 6.4e-103 379.4 593 78.9
BraA09t39664Z Brassica rapa HOM05D007426 ORTHO05D009167 5.4e-102 376.3 592 68.9
A01p19900 Brassica napus HOM05D007426 ORTHO05D009167 4.3e-99 366.7 442 75.6
AT1G22960 Arabidopsis thaliana HOM05D007426 ORTHO05D009167 1.2e-77 295.4 586 70.6
CARHR023340 Cardamine hirsuta HOM05D007426 ORTHO05D009167 7.9e-77 292.7 583 70.3
Carub.0001s2246 Capsella rubella HOM05D007426 ORTHO05D009167 4.3e-75 287.0 588 69.2
AL1G36520 Arabidopsis lyrata HOM05D007426 ORTHO05D009167 1.8e-73 281.6 216 73.6
BcaB03g11918 Brassica carinata HOM05D007426 ORTHO05D009167 1.4e-65 255.4 584 58.7
Aa31LG7G6970 Aethionema arabicum HOM05D007426 ORTHO05D009167 1.4e-57 228.8 216 61.6
THA.LOC104821759 Tarenaya hassleriana HOM05D007426 ORTHO05D009167 1.4e-54 218.8 219 57.1
Cpa.g.sc65.89 Carica papaya HOM05D007426 ORTHO05D009167 4.8e-42 177.2 217 47.9
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 1.4e-41 175.6 241 41.1
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 9.1e-41 172.9 270 39.3
TAR629G2850 Trochodendron aralioides HOM05D007426 ORTHO05D009167 1.6e-40 172.2 257 41.2
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 1.7e-39 168.7 268 39.9
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 8.5e-39 166.4 186 46.8
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 1.9e-38 165.2 277 38.3
QL01p003061 Quercus lobata HOM05D007426 ORTHO05D009167 2.5e-38 164.9 218 45.0
Atru.chr11.331 Acer truncatum HOM05D007426 ORTHO05D009167 7.2e-38 163.3 216 44.4
GSVIVG01011807001 Vitis vinifera HOM05D000798 ORTHO05D000659 1.2e-37 162.5 215 43.3
Ciclev10017504m.g Citrus clementina HOM05D007426 ORTHO05D009167 1.6e-37 162.2 221 43.4
ClCG04G001050 Citrullus lanatus HOM05D007426 ORTHO05D009167 2.7e-37 161.4 219 44.3
CiPaw.05G245100 Carya illinoinensis HOM05D007426 ORTHO05D009167 4.7e-37 160.6 213 45.5
MELO3C012287.2 Cucumis melo HOM05D007426 ORTHO05D009167 4.7e-37 160.6 219 43.8
Manes.06G063200 Manihot esculenta HOM05D007426 ORTHO05D009167 4.7e-37 160.6 216 44.0
MD13G1032800 Malus domestica HOM05D007426 ORTHO05D009167 1.4e-36 159.1 255 40.0
Gohir.D02G172600 Gossypium hirsutum HOM05D007426 ORTHO05D009167 2.3e-36 158.3 277 38.3
Duzib248G0356 Durio zibethinus HOM05D007426 ORTHO05D009167 6.7e-36 156.8 220 43.2
Gohir.A03G149700 Gossypium hirsutum HOM05D007426 ORTHO05D009167 1.1e-35 156.0 207 42.0
Gorai.005G194300 Gossypium raimondii HOM05D007426 ORTHO05D009167 2.6e-35 154.8 271 38.4
RcHm_v2.0_Chr4g0434041 Rosa chinensis HOM05D007426 ORTHO05D009167 2.6e-35 154.8 223 43.5
Aqoxy3G03989 Aquilegia oxysepala HOM05D007426 ORTHO05D009167 3.3e-35 154.5 215 40.0
Haze_00680 Corylus avellana HOM05D007426 ORTHO05D009167 5.7e-35 153.7 209 44.0
TWI79G0655 Tripterygium wilfordii HOM05D007426 ORTHO05D009167 5.7e-35 153.7 208 44.2
CsaV3_5G034750 Cucumis sativus L. HOM05D007426 ORTHO05D009167 3.7e-34 151.0 219 42.5
Sed0007337 Sechium edule HOM05D007426 ORTHO05D009167 8.2e-34 149.8 213 42.7
Nn3g17999 Nelumbo nucifera HOM05D007426 ORTHO05D009167 1.8e-33 148.7 217 41.9
Sc11g0003960 Simmondsia chinensis HOM05D007426 ORTHO05D009167 3.5e-32 144.4 171 42.1
Dinv04907 Davidia involucrata HOM05D007426 ORTHO05D009167 7.7e-32 143.3 228 40.4
VMungo1215G1392 Vigna mungo HOM05D007426 ORTHO05D009167 1.0e-31 142.9 190 42.6
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 2.9e-31 141.4 190 37.4
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 3.8e-31 141.0 182 37.4
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 5.0e-31 140.6 190 36.8
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 5.0e-31 140.6 190 37.4
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 8.5e-31 139.8 224 40.6
MSTRG.13563 Avicennia marina HOM05D007426 ORTHO05D009167 1.5e-30 139.0 134 47.8
CANSAT01G1275 Cannabis sativa HOM05D007426 ORTHO05D009167 1.5e-30 139.0 212 40.1
FAN12G1804 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.5e-30 139.0 216 39.8
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 1.5e-30 139.0 232 40.5
C05p22100 Brassica napus HOM05D007426 ORTHO05D009167 2.5e-30 138.3 203 82.3
Hma1.2p1_0882F.1_g232200 Hydrangea macrophylla HOM05D007426 ORTHO05D009167 2.5e-30 138.3 223 39.9
FAN12G0928 Fragaria x ananassa HOM05D007426 ORTHO05D009167 3.2e-30 137.9 217 40.6
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 3.6e-29 134.4 190 40.0
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 8.0e-29 133.3 262 37.0
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 1.4e-28 132.5 254 35.4
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 6.8e-28 130.2 191 37.2
Cc11_g09290 Coffea canephora HOM05D007426 ORTHO05D009167 1.2e-27 129.4 131 46.6
SalBow8G0581 Salvia bowleyana HOM05D007426 ORTHO05D009167 1.2e-27 129.4 135 48.1
CDE04G0172 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 2.6e-27 128.3 214 40.2
SGA_v2.0_scaffold376G50296 Striga asiatica HOM05D007426 ORTHO05D009167 3.4e-27 127.9 137 46.0
Ca_12586_v3 Cicer arietinum L. HOM05D007426 ORTHO05D009167 5.7e-27 127.1 149 45.6
HPP92_023011 Vanilla planifolia HOM05D007426 ORTHO05D009167 5.7e-27 127.1 264 34.5
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 7.5e-27 126.7 191 38.7
Glyma.13G034900 Glycine max HOM05D007426 ORTHO05D009167 7.5e-27 126.7 190 36.8
Nitab4.5_0003886g0020 Nicotiana tabacum HOM05D007426 ORTHO05D009167 9.8e-27 126.3 179 37.4
Actinidia34749 Actinidia chinensis HOM05D007426 ORTHO05D009167 2.2e-26 125.2 211 40.3
Lalb_Chr10g0096341 Lupinus albus HOM05D007426 ORTHO05D009167 2.2e-26 125.2 135 48.1
CAN.G1489.16 Capsicum annuum HOM05D007426 ORTHO05D009167 4.8e-26 124.0 188 37.8
ECA234G2171 Erigeron canadensis HOM05D007426 ORTHO05D009167 8.3e-26 123.2 190 34.2
Lj2g0001206 Lotus japonicus HOM05D007426 ORTHO05D009167 5.4e-25 120.6 141 45.4
Lsat_1_v5_gn_4_15701 Lactuca sativa HOM05D007426 ORTHO05D009167 9.1e-25 119.8 269 32.3
Nitab4.5_0000350g0090 Nicotiana tabacum HOM05D007426 ORTHO05D009167 9.1e-25 119.8 137 42.3
Psat6g044600 Pisum sativum HOM05D007426 ORTHO05D009167 1.6e-24 119.0 142 43.0
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 2.0e-24 118.6 142 45.1
Medtr1g031720 Medicago truncatula HOM05D007426 ORTHO05D009167 7.7e-24 116.7 174 37.4
BcaC05g26202 Brassica carinata HOM05D007426 ORTHO05D009167 5.5e-22 110.5 62 83.9
BolC5t30906H Brassica oleracea HOM05D007426 ORTHO05D009167 5.5e-22 110.5 62 83.9
CSS0028756 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 1.6e-21 109.0 127 44.9
Migut.E00390 Erythranthe guttata HOM05D007426 ORTHO05D009167 3.4e-19 101.3 137 37.2
ATR0579G149 Amborella trichopoda HOM05D007426 ORTHO05D009167 1.1e-17 96.3 184 33.2
Cfa015816 Carpinus fangiana HOM05D007426 ORTHO05D009167 9.2e-17 93.2 73 58.9
Oeu048376.1 Olea europaea HOM05D007426 ORTHO05D009167 2.7e-16 91.7 186 32.8
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 4.0e-12 77.8 117 38.5
TPR.G36966 Trifolium pratense HOM05D007426 ORTHO05D009167 2.6e-11 75.1 142 33.8
FAN07G1506 Fragaria x ananassa HOM05D007426 ORTHO05D009167 4.4e-11 74.3 101 39.6
FAN17G2923 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.3e-10 72.8 134 35.1
FvH4_4g26410 Fragaria vesca HOM05D007426 ORTHO05D009167 2.2e-10 72.0 91 41.8
A09p41780 Brassica napus HOM05D007426 ORTHO05D009167 3.5e-08 64.7 41 78.0
SEGI_36761 Sequoiadendron giganteum HOM05D007426 ORTHO05D009167 4.6e-08 64.3 132 28.0
Zm00001eb406750 Zea mays HOM05D025020 ORTHO05D009167 3.9e-07 61.2 191 29.8
Os12g0152600 Oryza sativa ssp. japonica HOM05D025020 ORTHO05D009167 5.0e-07 60.8 186 29.0
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 1.5e-06 59.3 193 21.8


User provided reference genes

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