Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 5.9e-200 700.7 354 100.0
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 4.0e-188 661.4 353 92.6
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 3.3e-187 658.3 353 92.1
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 4.4e-187 657.9 353 92.1
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 2.0e-184 649.0 353 92.4
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 5.0e-183 644.4 354 91.0
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 8.8e-180 633.6 353 90.4
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 8.8e-180 633.6 365 88.8
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 1.2e-176 623.2 356 89.9
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 3.8e-175 618.2 375 85.9
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 8.0e-173 610.5 353 87.5
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 1.8e-169 599.4 376 82.4
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 4.4e-155 551.6 352 80.7
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 2.6e-147 525.8 347 78.4
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 1.9e-145 519.6 340 78.5
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 9.2e-145 517.3 355 74.9
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.6e-144 516.5 352 75.9
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 3.5e-144 515.4 341 78.3
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 1.7e-143 513.1 345 75.4
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 8.6e-143 510.8 352 74.4
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 1.1e-142 510.4 350 75.7
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 2.1e-141 506.1 345 74.8
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 3.6e-141 505.4 288 88.9
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 8.1e-141 504.2 320 80.9
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 1.1e-140 503.8 348 74.7
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 1.8e-140 503.1 323 78.6
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 2.4e-140 502.7 322 78.3
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 3.1e-140 502.3 303 81.8
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 4.0e-140 501.9 352 73.3
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 4.0e-140 501.9 379 70.4
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 5.2e-140 501.5 305 80.0
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 5.2e-140 501.5 344 76.2
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 1.2e-139 500.4 322 78.9
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 1.5e-139 500.0 364 73.4
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 4.4e-139 498.4 326 77.6
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 9.9e-139 497.3 331 76.4
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 1.3e-138 496.9 331 76.1
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 1.3e-138 496.9 352 73.9
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 2.9e-138 495.7 352 71.3
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 1.1e-137 493.8 333 76.9
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.1e-137 493.8 320 76.2
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 7.1e-137 491.1 288 83.3
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 9.2e-137 490.7 306 79.4
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.6e-136 490.0 320 75.6
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 4.6e-136 488.4 320 75.6
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 1.0e-135 487.3 306 77.8
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 1.0e-135 487.3 303 78.5
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 1.3e-135 486.9 320 74.4
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 1.7e-135 486.5 320 74.7
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 3.0e-135 485.7 352 71.6
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 3.0e-135 485.7 303 79.2
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 3.0e-135 485.7 303 79.2
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 3.9e-135 485.3 308 78.9
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 3.9e-135 485.3 304 78.6
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 3.9e-135 485.3 305 79.0
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 5.1e-135 485.0 304 79.9
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 6.6e-135 484.6 319 78.1
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 6.6e-135 484.6 350 71.1
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 1.9e-134 483.0 320 75.0
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 4.3e-134 481.9 327 75.5
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 7.3e-134 481.1 296 79.1
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 1.2e-133 480.3 320 75.3
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 4.7e-133 478.4 322 75.8
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 2.4e-132 476.1 322 73.9
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 3.1e-132 475.7 325 71.7
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 4.0e-132 475.3 372 67.5
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 3.4e-131 472.2 303 76.2
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 4.4e-131 471.9 328 73.2
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 1.7e-130 469.9 304 77.3
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 4.9e-130 468.4 307 76.2
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 1.9e-129 466.5 304 74.3
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 4.2e-129 465.3 308 75.3
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 1.6e-128 463.4 310 74.5
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 2.7e-128 462.6 309 73.8
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 2.7e-128 462.6 307 74.3
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 6.0e-128 461.5 302 74.5
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 1.0e-127 460.7 340 70.6
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 6.6e-127 458.0 307 74.3
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 1.1e-126 457.2 352 67.0
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 1.1e-126 457.2 352 67.0
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 7.3e-126 454.5 318 74.5
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 1.1e-124 450.7 304 75.3
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 9.3e-121 437.6 388 61.9
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 1.3e-119 433.7 284 77.8
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 1.3e-117 427.2 343 66.5
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 6.9e-116 421.4 275 76.7
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 3.4e-115 419.1 273 76.6
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 3.0e-111 406.0 276 71.4
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 5.3e-108 395.2 270 74.8
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 2.0e-107 393.3 355 58.6
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 1.8e-103 380.2 303 62.0
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 3.9e-103 379.0 268 72.8
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 8.7e-103 377.9 265 72.1
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 2.5e-102 376.3 236 75.4
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 1.1e-100 370.9 300 61.0
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 6.1e-96 355.1 317 63.7
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 2.2e-93 346.7 239 73.6
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 2.8e-93 346.3 201 83.1
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.1e-92 344.4 260 68.5
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 1.4e-92 344.0 304 60.5
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 1.5e-91 340.5 310 55.8
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 3.4e-91 339.3 205 81.0
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 4.5e-91 339.0 237 70.5
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 4.2e-89 332.4 342 56.1
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 4.5e-83 312.4 309 56.0
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.7e-82 310.5 200 74.0
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 8.0e-80 301.6 194 79.9
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 1.5e-78 297.4 344 48.5
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 1.3e-69 267.7 219 61.2
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 1.2e-62 244.6 148 79.1
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 3.5e-59 233.0 197 61.4
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 5.9e-59 232.3 131 84.7
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 6.6e-58 228.8 286 45.5
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 1.8e-55 220.7 126 89.7
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 1.8e-55 220.7 126 89.7
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 1.1e-52 211.5 243 50.6
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 2.4e-52 210.3 122 87.7
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 5.9e-51 205.7 117 85.5
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 6.6e-50 202.2 163 65.6
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 4.7e-48 196.1 120 78.3
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 4.0e-47 193.0 134 73.1
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 3.4e-46 189.9 321 36.4
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 4.4e-46 189.5 198 54.0
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 7.5e-46 188.7 120 75.8
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 1.1e-44 184.9 153 71.9
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 8.0e-40 168.7 162 59.3
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 2.4e-36 157.1 86 88.4
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 3.1e-23 113.6 116 54.3
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 7.1e-20 102.4 118 50.8
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 3.5e-19 100.1 95 60.0
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 6.2e-16 89.4 72 62.5
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 2.4e-15 87.4 70 65.7
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 1.2e-14 85.1 79 57.0
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 1.3e-13 81.6 110 42.7
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 2.2e-13 80.9 142 39.4
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 1.2e-11 75.1 82 51.2
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 8.7e-10 68.9 78 52.6
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 1.1e-09 68.6 35 85.7
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 1.6e-08 64.7 158 34.8
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 1.6e-08 64.7 92 44.6
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 6.9e-07 59.3 72 56.9
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 2.0e-06 57.8 60 61.7


User provided reference genes

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